Wall clock time and date at job start Tue Mar 31 2020 23:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46817 * 2 1 4 4 N 1.46498 * 109.47435 * 240.00392 * 2 1 3 5 5 C 1.36938 * 120.00176 * 85.27395 * 4 2 1 6 6 H 1.07996 * 120.00077 * 359.72097 * 5 4 2 7 7 C 1.38813 * 119.99839 * 179.72998 * 5 4 2 8 8 N 1.31616 * 120.00507 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99855 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47499 * 89.99549 * 9 7 5 11 11 H 1.48503 * 109.47395 * 209.99620 * 9 7 5 12 12 H 1.48505 * 109.47127 * 329.99581 * 9 7 5 13 13 C 1.53001 * 109.47139 * 120.00117 * 2 1 3 14 14 H 1.08994 * 110.88832 * 60.06032 * 13 2 1 15 15 C 1.55158 * 111.00032 * 183.98323 * 13 2 1 16 16 C 1.54330 * 102.93955 * 153.57813 * 15 13 2 17 17 N 1.47028 * 107.26982 * 337.80341 * 16 15 13 18 18 C 1.34770 * 125.64609 * 178.90615 * 17 16 15 19 19 O 1.21546 * 119.99879 * 185.24692 * 18 17 16 20 20 C 1.47908 * 120.00585 * 5.24568 * 18 17 16 21 21 C 1.38894 * 121.10826 * 44.94684 * 20 18 17 22 22 C 1.39265 * 119.58215 * 179.97438 * 21 20 18 23 23 N 1.30995 * 121.88059 * 359.97438 * 22 21 20 24 24 C 1.33535 * 121.82926 * 0.02562 * 23 22 21 25 25 C 1.40709 * 120.97120 * 180.02562 * 24 23 22 26 26 C 1.36065 * 119.74046 * 179.29321 * 25 24 23 27 27 C 1.39353 * 121.05402 * 0.66863 * 26 25 24 28 28 C 1.36248 * 120.83623 * 359.55002 * 27 26 25 29 29 C 1.40103 * 119.64565 * 359.97438 * 28 27 26 30 30 C 1.47422 * 108.70050 * 358.94100 * 17 16 15 31 31 H 1.08993 * 109.47476 * 305.10128 * 1 2 3 32 32 H 1.09004 * 109.47135 * 65.10808 * 1 2 3 33 33 H 1.09006 * 109.46982 * 185.09535 * 1 2 3 34 34 H 0.97005 * 120.00038 * 265.00381 * 4 2 1 35 35 H 0.96995 * 120.00634 * 180.02562 * 8 7 5 36 36 H 1.08997 * 110.72054 * 271.93644 * 15 13 2 37 37 H 1.08996 * 110.72648 * 35.21892 * 15 13 2 38 38 H 1.09000 * 109.87995 * 218.39107 * 16 15 13 39 39 H 1.08998 * 110.01262 * 97.29566 * 16 15 13 40 40 H 1.08008 * 120.20710 * 359.95745 * 21 20 18 41 41 H 1.07997 * 119.06073 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.13035 * 359.97438 * 25 24 23 43 43 H 1.08006 * 119.47361 * 180.21826 * 26 25 24 44 44 H 1.07997 * 119.57802 * 179.56710 * 27 26 25 45 45 H 1.07999 * 120.17427 * 180.02562 * 28 27 26 46 46 H 1.08992 * 110.36858 * 265.28742 * 30 17 16 47 47 H 1.09006 * 110.45460 * 143.01551 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1545 -0.0060 -2.3743 6 1 1.8976 1.0419 -2.4229 7 6 2.6226 -0.6590 -3.5063 8 7 2.9361 -1.9359 -3.4472 9 14 2.8077 0.2746 -5.1136 10 1 4.1699 0.8607 -5.1918 11 1 2.6030 -0.6556 -6.2529 12 1 1.7972 1.3612 -5.1741 13 6 2.0400 -0.7213 1.2492 14 1 1.6903 -1.7534 1.2720 15 6 3.5877 -0.6554 1.3364 16 6 3.8537 -0.7724 2.8521 17 7 2.6250 -0.3569 3.5443 18 6 2.4439 -0.3378 4.8796 19 8 1.3528 -0.0658 5.3411 20 6 3.5727 -0.6477 5.7837 21 6 4.8318 -0.1004 5.5732 22 6 5.8720 -0.4135 6.4446 23 7 5.7008 -1.2146 7.4668 24 6 4.5187 -1.7769 7.7307 25 6 4.3549 -2.6344 8.8341 26 6 3.1356 -3.1824 9.0880 27 6 2.0436 -2.9196 8.2632 28 6 2.1658 -2.0979 7.1833 29 6 3.4043 -1.5085 6.8976 30 6 1.6236 0.0346 2.5356 31 1 -0.3634 0.5909 0.8407 32 1 -0.3633 0.4326 -0.9322 33 1 -0.3633 -1.0237 0.0913 34 1 2.2490 -1.6317 -1.1527 35 1 3.2635 -2.3921 -4.2381 36 1 4.0400 -1.4895 0.8000 37 1 3.9555 0.2962 0.9527 38 1 4.6781 -0.1180 3.1353 39 1 4.0939 -1.8038 3.1101 40 1 5.0031 0.5636 4.7387 41 1 6.8475 0.0171 6.2733 42 1 5.1910 -2.8481 9.4835 43 1 3.0139 -3.8372 9.9383 44 1 1.0883 -3.3728 8.4830 45 1 1.3122 -1.9013 6.5515 46 1 1.6534 1.1114 2.3695 47 1 0.6261 -0.2725 2.8500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484340024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:24 Heat of formation + Delta-G solvation = 37.327551 kcal Electronic energy + Delta-G solvation = -28678.225266 eV Core-core repulsion = 24826.076139 eV Total energy + Delta-G solvation = -3852.149127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.40289 -39.88914 -37.89683 -37.38764 -35.31211 -33.81247 -32.46283 -30.93390 -30.78137 -30.18852 -29.27719 -27.55841 -25.70756 -24.32254 -23.92856 -23.36847 -22.36777 -21.51688 -19.77907 -19.72059 -18.57733 -17.75618 -17.51985 -17.10710 -16.33822 -16.01741 -15.52956 -15.05984 -14.77825 -14.62470 -14.27693 -14.22193 -14.15705 -13.92955 -13.51209 -13.33318 -13.22958 -12.76997 -12.61287 -12.48357 -12.20097 -12.11003 -11.87150 -11.78128 -11.66898 -11.28149 -10.92919 -10.87536 -10.77521 -10.64130 -10.51343 -10.40435 -10.25872 -9.93076 -9.70376 -9.65893 -9.12171 -8.96140 -8.78098 -8.55873 -7.01455 -5.81394 -3.10076 -0.13654 0.46988 1.45412 2.43979 2.61601 2.80735 3.39797 3.45799 3.47023 3.78674 3.91362 4.05537 4.33689 4.39469 4.51370 4.52299 4.69811 4.74914 4.77836 4.88686 4.96411 5.05954 5.16556 5.24053 5.28017 5.41202 5.49149 5.49802 5.59593 5.70555 5.72681 5.81631 5.81853 5.88888 5.98727 5.99543 6.07028 6.15167 6.16997 6.19032 6.31471 6.38540 6.50459 6.51486 6.58820 6.81516 7.04829 7.30227 7.53281 7.65941 7.85970 8.37001 9.48600 10.05179 10.40063 11.41157 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.002292 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.096894 B =12210.943439 C =12732.678444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.115 4.115 16 C 0.092 3.908 17 N -0.605 5.605 18 C 0.573 3.427 19 O -0.529 6.529 20 C -0.057 4.057 21 C -0.143 4.143 22 C 0.130 3.870 23 N -0.463 5.463 24 C 0.127 3.873 25 C -0.096 4.096 26 C -0.098 4.098 27 C -0.115 4.115 28 C -0.090 4.090 29 C -0.068 4.068 30 C 0.113 3.887 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.141 0.859 46 H 0.073 0.927 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 -0.088 23.569 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.031 4.031 17 N -0.338 5.338 18 C 0.360 3.640 19 O -0.406 6.406 20 C -0.068 4.068 21 C -0.163 4.163 22 C -0.042 4.042 23 N -0.171 5.171 24 C 0.005 3.995 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.133 4.133 28 C -0.108 4.108 29 C -0.071 4.071 30 C -0.009 4.009 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.165 0.835 41 H 0.184 0.816 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.159 0.841 46 H 0.091 0.909 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.617 -0.071 24.350 24.617 hybrid contribution -0.434 0.367 -1.610 1.707 sum 3.183 0.297 22.740 22.964 Atomic orbital electron populations 1.22499 0.99204 1.00661 1.00489 1.20123 0.91839 0.95134 0.85365 0.93234 1.42363 1.78154 1.10585 1.05198 1.19206 1.36342 0.93840 0.87406 0.91220 1.24718 1.02190 0.95947 0.98018 1.69647 1.50787 1.08670 1.29003 0.86226 0.77776 0.78628 0.83765 1.21757 1.21833 1.20806 1.22690 0.95183 1.00334 0.94023 0.89996 1.22591 0.96431 1.04368 0.91919 1.22391 0.86582 0.99969 0.94120 1.48477 1.16557 1.64373 1.04415 1.17698 0.87424 0.77936 0.80903 1.90794 1.25337 1.49097 1.75420 1.20342 0.94142 0.97285 0.95078 1.22516 0.92175 1.00539 1.01109 1.22927 0.99066 0.92996 0.89172 1.67812 1.23345 1.07897 1.18061 1.18847 0.88240 0.96977 0.95438 1.20809 0.98224 0.96410 0.95994 1.20976 0.92425 0.99000 0.99375 1.21029 0.99281 0.98051 0.94890 1.21268 0.96533 0.95221 0.97806 1.18611 0.95536 0.97971 0.94982 1.22394 0.92254 0.99533 0.86698 0.94390 0.92497 0.93560 0.78291 0.93523 0.89255 0.89998 0.91190 0.91392 0.83519 0.81598 0.84474 0.85062 0.85208 0.84137 0.90853 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.23 37.16 0.34 -2.52 16 2 C 0.19 3.33 2.40 -67.93 -0.16 3.17 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -16.63 4.88 -53.43 -0.26 -16.89 16 5 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 6 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.08 13.06 55.49 0.72 -26.35 16 9 Si 0.90 21.71 29.55 -169.99 -5.02 16.68 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C -0.10 -1.50 2.63 -88.47 -0.23 -1.73 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.12 -1.55 6.19 -24.89 -0.15 -1.70 16 16 C 0.09 1.02 5.94 -3.06 -0.02 1.00 16 17 N -0.61 -7.76 3.33 -171.61 -0.57 -8.33 16 18 C 0.57 7.95 6.99 -12.30 -0.09 7.86 16 19 O -0.53 -8.77 15.39 5.33 0.08 -8.69 16 20 C -0.06 -0.70 5.43 -104.34 -0.57 -1.26 16 21 C -0.14 -1.37 8.55 -38.96 -0.33 -1.71 16 22 C 0.13 1.18 11.14 -17.53 -0.20 0.99 16 23 N -0.46 -5.21 10.30 -11.01 -0.11 -5.33 16 24 C 0.13 1.48 6.61 -84.87 -0.56 0.92 16 25 C -0.10 -0.91 9.98 -39.43 -0.39 -1.30 16 26 C -0.10 -0.79 9.94 -39.95 -0.40 -1.19 16 27 C -0.11 -1.04 9.96 -39.88 -0.40 -1.44 16 28 C -0.09 -1.05 9.19 -39.60 -0.36 -1.41 16 29 C -0.07 -0.85 5.76 -106.52 -0.61 -1.46 16 30 C 0.11 1.52 5.54 -2.53 -0.01 1.51 16 31 H 0.04 0.55 7.59 -51.93 -0.39 0.15 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.38 9.46 7.80 -40.82 -0.32 9.15 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 38 H 0.07 0.63 5.82 -51.93 -0.30 0.33 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.15 1.11 6.23 -52.48 -0.33 0.78 16 41 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.14 1.78 6.15 -52.49 -0.32 1.46 16 46 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 47 H 0.08 1.12 7.99 -51.93 -0.41 0.70 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -31.79 383.56 -10.46 -42.25 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.68 Total: 7.96 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -4.39 Total: -7.08 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.22 Total: -56.90 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.79 -10.46 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484340024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.580 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds