Wall clock time and date at job start Tue Mar 31 2020 23:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46845 * 2 1 4 4 N 1.46504 * 109.47090 * 239.99602 * 2 1 3 5 5 C 1.36937 * 119.99699 * 84.99963 * 4 2 1 6 6 H 1.08001 * 119.99939 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99938 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99757 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00095 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47096 * 59.99847 * 9 7 5 11 11 H 1.48493 * 109.46973 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46772 * 299.99758 * 9 7 5 13 13 C 1.52993 * 109.46977 * 119.99752 * 2 1 3 14 14 H 1.09003 * 110.89251 * 63.88083 * 13 2 1 15 15 C 1.55159 * 111.00780 * 300.00005 * 13 2 1 16 16 C 1.54324 * 102.94572 * 206.38675 * 15 13 2 17 17 N 1.47022 * 107.26789 * 22.19098 * 16 15 13 18 18 C 1.34777 * 125.64257 * 181.02208 * 17 16 15 19 19 O 1.21543 * 119.99943 * 184.90109 * 18 17 16 20 20 C 1.47904 * 120.00194 * 4.89809 * 18 17 16 21 21 C 1.38885 * 121.11447 * 312.67985 * 20 18 17 22 22 C 1.39271 * 119.57865 * 180.29816 * 21 20 18 23 23 N 1.30994 * 121.88489 * 359.39184 * 22 21 20 24 24 C 1.33538 * 121.82386 * 0.64571 * 23 22 21 25 25 C 1.40712 * 120.97073 * 179.67630 * 24 23 22 26 26 C 1.36064 * 119.74290 * 179.97438 * 25 24 23 27 27 C 1.39353 * 121.05033 * 0.02562 * 26 25 24 28 28 C 1.36242 * 120.84219 * 359.97438 * 27 26 25 29 29 C 1.40098 * 119.64185 * 0.04303 * 28 27 26 30 30 C 1.47420 * 108.70795 * 1.28745 * 17 16 15 31 31 H 1.08993 * 109.47011 * 299.99981 * 1 2 3 32 32 H 1.08995 * 109.46915 * 60.00229 * 1 2 3 33 33 H 1.09000 * 109.46845 * 179.97438 * 1 2 3 34 34 H 0.96992 * 120.00092 * 264.99989 * 4 2 1 35 35 H 0.96997 * 119.99691 * 180.02562 * 8 7 5 36 36 H 1.09003 * 110.72021 * 88.02049 * 15 13 2 37 37 H 1.08998 * 110.87090 * 324.82693 * 15 13 2 38 38 H 1.09000 * 109.87912 * 262.77480 * 16 15 13 39 39 H 1.08996 * 110.01107 * 141.68418 * 16 15 13 40 40 H 1.08001 * 120.21245 * 0.02942 * 21 20 18 41 41 H 1.08003 * 119.06003 * 179.70438 * 22 21 20 42 42 H 1.08003 * 120.12958 * 359.96066 * 25 24 23 43 43 H 1.07999 * 119.47323 * 179.97438 * 26 25 24 44 44 H 1.08005 * 119.57668 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.17679 * 180.02562 * 28 27 26 46 46 H 1.09005 * 110.36636 * 94.47701 * 30 17 16 47 47 H 1.08994 * 110.36935 * 216.80824 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3758 6 1 1.8927 1.0404 -2.4242 7 6 2.6123 -0.6619 -3.5090 8 7 2.9254 -1.9389 -3.4498 9 14 2.7914 0.2701 -5.1180 10 1 3.7465 1.3926 -4.9362 11 1 3.3014 -0.6481 -6.1677 12 1 1.4692 0.8068 -5.5288 13 6 2.0400 -0.7212 1.2492 14 1 1.7469 -1.7710 1.2389 15 6 1.5426 -0.0177 2.5396 16 6 2.6244 -0.3899 3.5753 17 7 3.8422 -0.7378 2.8285 18 6 5.0089 -1.1383 3.3715 19 8 5.9802 -1.3152 2.6624 20 6 5.1075 -1.3626 4.8301 21 6 4.6148 -0.4308 5.7344 22 6 4.7301 -0.6716 7.1012 23 7 5.2830 -1.7640 7.5671 24 6 5.7788 -2.7029 6.7572 25 6 6.3749 -3.8666 7.2772 26 6 6.8716 -4.8074 6.4290 27 6 6.8009 -4.6388 5.0475 28 6 6.2308 -3.5251 4.5081 29 6 5.7095 -2.5356 5.3518 30 6 3.5777 -0.5697 1.3880 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6318 -1.1526 35 1 3.2494 -2.3960 -4.2416 36 1 0.5701 -0.4072 2.8408 37 1 1.4974 1.0624 2.4003 38 1 2.2943 -1.2450 4.1651 39 1 2.8210 0.4585 4.2306 40 1 4.1490 0.4769 5.3800 41 1 4.3484 0.0609 7.7971 42 1 6.4383 -4.0123 8.3455 43 1 7.3286 -5.6987 6.8328 44 1 7.2024 -5.4010 4.3961 45 1 6.1814 -3.4056 3.4358 46 1 3.8952 0.4191 1.0568 47 1 4.0879 -1.3444 0.8157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484340026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:31 Heat of formation + Delta-G solvation = 38.337668 kcal Electronic energy + Delta-G solvation = -28824.348375 eV Core-core repulsion = 24972.243050 eV Total energy + Delta-G solvation = -3852.105325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35077 -39.82079 -37.85456 -37.34335 -35.28054 -33.75875 -32.50358 -30.89122 -30.73329 -30.20362 -28.70383 -28.18126 -25.52388 -24.06464 -23.88453 -23.53241 -22.34928 -21.58523 -19.74960 -19.63746 -18.54329 -17.69933 -17.49184 -16.99440 -16.23822 -16.00386 -15.48115 -15.00373 -14.73602 -14.61248 -14.26169 -14.20000 -14.14248 -13.92788 -13.70547 -13.29527 -13.07015 -12.81001 -12.67338 -12.25801 -12.11478 -12.07089 -11.81528 -11.69432 -11.59146 -11.41159 -10.90042 -10.83664 -10.82021 -10.63745 -10.57033 -10.38551 -10.25908 -9.93421 -9.65111 -9.60462 -9.08528 -8.92605 -8.68324 -8.51066 -6.98550 -5.77227 -3.06520 -0.08183 0.50594 1.51926 2.50798 2.67019 2.89347 3.43615 3.48271 3.49242 3.82582 3.94181 4.09846 4.35790 4.43416 4.55366 4.56661 4.59147 4.76030 4.80488 4.91896 4.93695 5.04639 5.20256 5.25098 5.32219 5.40079 5.52544 5.53520 5.58561 5.73939 5.77540 5.82998 5.83379 5.87584 5.97394 6.04773 6.11294 6.16790 6.19757 6.23528 6.29099 6.35339 6.48128 6.55353 6.58499 6.81225 7.03331 7.40588 7.55954 7.68417 7.97933 8.40780 9.52166 10.08358 10.42717 11.45200 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002604 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.992613 B =10750.705248 C =11821.215242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.101 4.101 14 H 0.082 0.918 15 C -0.124 4.124 16 C 0.095 3.905 17 N -0.608 5.608 18 C 0.569 3.431 19 O -0.521 6.521 20 C -0.052 4.052 21 C -0.149 4.149 22 C 0.130 3.870 23 N -0.465 5.465 24 C 0.127 3.873 25 C -0.098 4.098 26 C -0.096 4.096 27 C -0.114 4.114 28 C -0.088 4.088 29 C -0.069 4.069 30 C 0.119 3.881 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.146 0.854 41 H 0.166 0.834 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.141 0.859 46 H 0.075 0.925 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 -0.512 24.289 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.121 4.121 14 H 0.101 0.899 15 C -0.162 4.162 16 C -0.027 4.027 17 N -0.341 5.341 18 C 0.356 3.644 19 O -0.397 6.397 20 C -0.064 4.064 21 C -0.169 4.169 22 C -0.042 4.042 23 N -0.173 5.173 24 C 0.006 3.994 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.132 4.132 28 C -0.107 4.107 29 C -0.072 4.072 30 C -0.002 4.002 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.163 0.837 41 H 0.183 0.817 42 H 0.155 0.845 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.159 0.841 46 H 0.093 0.907 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.119 -0.751 24.660 24.762 hybrid contribution 0.019 0.385 -1.841 1.881 sum 2.138 -0.366 22.819 22.922 Atomic orbital electron populations 1.22447 0.99040 1.00921 1.00033 1.20146 0.91951 0.95149 0.85290 0.93268 1.42412 1.78193 1.10695 1.05254 1.19147 1.36840 0.93799 0.87296 0.91275 1.24728 1.02057 0.95947 0.98039 1.69643 1.50644 1.08655 1.29029 0.86298 0.77731 0.78656 0.83675 1.21275 1.21732 1.21325 1.22722 0.93413 1.00866 0.95110 0.89923 1.22695 0.97528 1.01681 0.94344 1.22267 0.85067 1.00028 0.95377 1.48523 1.10925 1.65324 1.09341 1.17700 0.82405 0.77733 0.86525 1.90843 1.35565 1.51374 1.61933 1.20398 0.97261 0.94899 0.93817 1.22494 0.99899 1.00281 0.94257 1.22895 0.94026 0.94090 0.93221 1.67805 1.08692 1.01642 1.39146 1.18831 0.97653 0.94637 0.88299 1.20796 0.98240 0.92003 1.00596 1.20983 0.98268 0.99005 0.93359 1.21046 0.99056 0.97842 0.95277 1.21282 0.95963 0.92553 1.00864 1.18614 0.99592 0.94765 0.94214 1.22405 0.96178 1.02994 0.78574 0.94340 0.92736 0.93504 0.78276 0.93448 0.89869 0.90141 0.91450 0.91279 0.83655 0.81727 0.84509 0.85050 0.85100 0.84113 0.90707 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.27 37.16 0.34 -2.34 16 2 C 0.18 3.32 2.43 -67.93 -0.17 3.16 16 3 H 0.05 0.91 8.01 -51.93 -0.42 0.49 16 4 N -0.72 -17.18 4.97 -53.42 -0.27 -17.45 16 5 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 9 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C -0.10 -1.48 2.67 -88.35 -0.24 -1.72 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.30 5.28 -24.90 -0.13 -1.43 16 16 C 0.10 0.96 5.67 -3.06 -0.02 0.94 16 17 N -0.61 -8.43 3.32 -171.47 -0.57 -9.00 16 18 C 0.57 8.71 6.93 -12.30 -0.09 8.62 16 19 O -0.52 -9.89 15.63 5.33 0.08 -9.81 16 20 C -0.05 -0.67 5.46 -104.34 -0.57 -1.24 16 21 C -0.15 -1.44 8.64 -38.96 -0.34 -1.77 16 22 C 0.13 1.16 11.14 -17.52 -0.20 0.97 16 23 N -0.46 -5.28 10.30 -11.00 -0.11 -5.39 16 24 C 0.13 1.54 6.61 -84.87 -0.56 0.98 16 25 C -0.10 -0.97 9.98 -39.43 -0.39 -1.36 16 26 C -0.10 -0.84 9.94 -39.95 -0.40 -1.24 16 27 C -0.11 -1.16 9.96 -39.88 -0.40 -1.56 16 28 C -0.09 -1.13 9.20 -39.60 -0.36 -1.50 16 29 C -0.07 -0.91 5.76 -106.52 -0.61 -1.52 16 30 C 0.12 1.94 6.22 -2.41 -0.01 1.92 16 31 H 0.04 0.50 7.27 -51.93 -0.38 0.12 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 37 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.54 6.04 -51.93 -0.31 0.22 16 40 H 0.15 1.05 6.00 -52.49 -0.31 0.74 16 41 H 0.17 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.14 2.03 6.25 -52.49 -0.33 1.70 16 46 H 0.07 1.27 7.99 -51.93 -0.41 0.86 16 47 H 0.09 1.65 8.08 -51.93 -0.42 1.23 16 LS Contribution 383.30 15.07 5.78 5.78 Total: -1.00 -33.23 383.30 -10.44 -43.67 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.67 Total: 8.20 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -4.38 Total: -6.10 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.22 Total: -58.96 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.23 -10.44 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484340026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.009 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds