Wall clock time and date at job start Tue Mar 31 2020 23:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46845 * 2 1 4 4 N 1.46504 * 109.47090 * 239.99602 * 2 1 3 5 5 C 1.36937 * 119.99699 * 84.99963 * 4 2 1 6 6 H 1.08001 * 119.99939 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99938 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99757 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00095 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47096 * 59.99847 * 9 7 5 11 11 H 1.48493 * 109.46973 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46772 * 299.99758 * 9 7 5 13 13 C 1.52993 * 109.46977 * 119.99752 * 2 1 3 14 14 H 1.09003 * 110.89251 * 63.88083 * 13 2 1 15 15 C 1.55159 * 111.00780 * 300.00005 * 13 2 1 16 16 C 1.54324 * 102.94572 * 206.38675 * 15 13 2 17 17 N 1.47022 * 107.26789 * 22.19098 * 16 15 13 18 18 C 1.34777 * 125.64257 * 181.02208 * 17 16 15 19 19 O 1.21543 * 119.99943 * 184.90109 * 18 17 16 20 20 C 1.47904 * 120.00194 * 4.89809 * 18 17 16 21 21 C 1.38885 * 121.11447 * 312.67985 * 20 18 17 22 22 C 1.39271 * 119.57865 * 180.29816 * 21 20 18 23 23 N 1.30994 * 121.88489 * 359.39184 * 22 21 20 24 24 C 1.33538 * 121.82386 * 0.64571 * 23 22 21 25 25 C 1.40712 * 120.97073 * 179.67630 * 24 23 22 26 26 C 1.36064 * 119.74290 * 179.97438 * 25 24 23 27 27 C 1.39353 * 121.05033 * 0.02562 * 26 25 24 28 28 C 1.36242 * 120.84219 * 359.97438 * 27 26 25 29 29 C 1.40098 * 119.64185 * 0.04303 * 28 27 26 30 30 C 1.47420 * 108.70795 * 1.28745 * 17 16 15 31 31 H 1.08993 * 109.47011 * 299.99981 * 1 2 3 32 32 H 1.08995 * 109.46915 * 60.00229 * 1 2 3 33 33 H 1.09000 * 109.46845 * 179.97438 * 1 2 3 34 34 H 0.96992 * 120.00092 * 264.99989 * 4 2 1 35 35 H 0.96997 * 119.99691 * 180.02562 * 8 7 5 36 36 H 1.09003 * 110.72021 * 88.02049 * 15 13 2 37 37 H 1.08998 * 110.87090 * 324.82693 * 15 13 2 38 38 H 1.09000 * 109.87912 * 262.77480 * 16 15 13 39 39 H 1.08996 * 110.01107 * 141.68418 * 16 15 13 40 40 H 1.08001 * 120.21245 * 0.02942 * 21 20 18 41 41 H 1.08003 * 119.06003 * 179.70438 * 22 21 20 42 42 H 1.08003 * 120.12958 * 359.96066 * 25 24 23 43 43 H 1.07999 * 119.47323 * 179.97438 * 26 25 24 44 44 H 1.08005 * 119.57668 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.17679 * 180.02562 * 28 27 26 46 46 H 1.09005 * 110.36636 * 94.47701 * 30 17 16 47 47 H 1.08994 * 110.36935 * 216.80824 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1491 -0.0076 -2.3758 6 1 1.8927 1.0404 -2.4242 7 6 2.6123 -0.6619 -3.5090 8 7 2.9254 -1.9389 -3.4498 9 14 2.7914 0.2701 -5.1180 10 1 3.7465 1.3926 -4.9362 11 1 3.3014 -0.6481 -6.1677 12 1 1.4692 0.8068 -5.5288 13 6 2.0400 -0.7212 1.2492 14 1 1.7469 -1.7710 1.2389 15 6 1.5426 -0.0177 2.5396 16 6 2.6244 -0.3899 3.5753 17 7 3.8422 -0.7378 2.8285 18 6 5.0089 -1.1383 3.3715 19 8 5.9802 -1.3152 2.6624 20 6 5.1075 -1.3626 4.8301 21 6 4.6148 -0.4308 5.7344 22 6 4.7301 -0.6716 7.1012 23 7 5.2830 -1.7640 7.5671 24 6 5.7788 -2.7029 6.7572 25 6 6.3749 -3.8666 7.2772 26 6 6.8716 -4.8074 6.4290 27 6 6.8009 -4.6388 5.0475 28 6 6.2308 -3.5251 4.5081 29 6 5.7095 -2.5356 5.3518 30 6 3.5777 -0.5697 1.3880 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6318 -1.1526 35 1 3.2494 -2.3960 -4.2416 36 1 0.5701 -0.4072 2.8408 37 1 1.4974 1.0624 2.4003 38 1 2.2943 -1.2450 4.1651 39 1 2.8210 0.4585 4.2306 40 1 4.1490 0.4769 5.3800 41 1 4.3484 0.0609 7.7971 42 1 6.4383 -4.0123 8.3455 43 1 7.3286 -5.6987 6.8328 44 1 7.2024 -5.4010 4.3961 45 1 6.1814 -3.4056 3.4358 46 1 3.8952 0.4191 1.0568 47 1 4.0879 -1.3444 0.8157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484340026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:30 Heat of formation + Delta-G solvation = 17.184745 kcal Electronic energy + Delta-G solvation = -28825.265635 eV Core-core repulsion = 24972.243050 eV Total energy + Delta-G solvation = -3853.022585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.24080 -40.88986 -39.11298 -38.12114 -36.83732 -34.75917 -34.17029 -32.13614 -31.63620 -31.12321 -30.05553 -29.58647 -26.51393 -25.89506 -24.69886 -24.52795 -23.28183 -22.92429 -21.10551 -20.66932 -19.46431 -19.04781 -18.55637 -18.30795 -17.34047 -17.16755 -16.52883 -16.42518 -15.76814 -15.63481 -15.47356 -15.37613 -15.09126 -15.03193 -14.89061 -14.59935 -14.22279 -14.01996 -13.96778 -13.60275 -13.36113 -13.14629 -12.88393 -12.81990 -12.67297 -12.57857 -12.41376 -12.38513 -12.25497 -12.01895 -11.81490 -11.66893 -11.55329 -11.45239 -11.35370 -10.92744 -10.53198 -9.85043 -9.82784 -9.35275 -8.99095 -7.92771 -5.20197 -0.91722 -0.26715 0.63582 1.43638 1.45687 1.48477 1.54114 1.74309 1.94218 2.56350 3.00697 3.11508 3.28238 3.41058 3.52822 3.60134 3.62328 3.68234 3.80555 3.84355 4.05550 4.12466 4.17165 4.24663 4.34835 4.39969 4.46503 4.51660 4.55341 4.64156 4.66766 4.76537 4.83968 4.86505 4.94393 4.96125 5.03314 5.06999 5.11076 5.19168 5.29234 5.30488 5.41121 5.42431 5.43852 5.53687 5.65613 5.80248 6.29329 6.30664 6.78168 6.82871 7.35286 8.13351 8.33904 9.30779 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002604 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.992613 B =10750.705248 C =11821.215242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.049 0.951 4 N -0.739 5.739 5 C -0.231 4.231 6 H 0.077 0.923 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.281 1.281 11 H -0.300 1.300 12 H -0.276 1.276 13 C -0.093 4.093 14 H 0.072 0.928 15 C -0.111 4.111 16 C 0.091 3.909 17 N -0.605 5.605 18 C 0.566 3.434 19 O -0.575 6.575 20 C -0.080 4.080 21 C -0.127 4.127 22 C 0.135 3.865 23 N -0.475 5.475 24 C 0.109 3.891 25 C -0.098 4.098 26 C -0.092 4.092 27 C -0.108 4.108 28 C -0.125 4.125 29 C -0.089 4.089 30 C 0.124 3.876 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.175 0.825 41 H 0.211 0.789 42 H 0.159 0.841 43 H 0.169 0.831 44 H 0.148 0.852 45 H 0.109 0.891 46 H 0.063 0.937 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 1.164 28.080 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 H 0.067 0.933 4 N -0.378 5.378 5 C -0.363 4.363 6 H 0.095 0.905 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.207 1.207 11 H -0.227 1.227 12 H -0.202 1.202 13 C -0.113 4.113 14 H 0.091 0.909 15 C -0.149 4.149 16 C -0.030 4.030 17 N -0.337 5.337 18 C 0.355 3.645 19 O -0.456 6.456 20 C -0.092 4.092 21 C -0.147 4.147 22 C -0.037 4.037 23 N -0.183 5.183 24 C -0.012 4.012 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.125 4.125 28 C -0.143 4.143 29 C -0.091 4.091 30 C 0.001 3.999 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.200 0.800 35 H 0.057 0.943 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.192 0.808 41 H 0.227 0.773 42 H 0.177 0.823 43 H 0.186 0.814 44 H 0.165 0.835 45 H 0.127 0.873 46 H 0.081 0.919 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.366 0.971 28.509 28.528 hybrid contribution 0.538 -0.098 -2.901 2.952 sum 0.904 0.874 25.608 25.639 Atomic orbital electron populations 1.22280 0.96843 1.00915 1.01235 1.20422 0.93262 0.94790 0.84434 0.93331 1.42667 1.78511 1.10222 1.06447 1.19563 1.34358 0.94126 0.88269 0.90493 1.25514 1.03362 0.96827 1.01438 1.69813 1.52916 1.10292 1.29300 0.85293 0.77978 0.77274 0.79754 1.20689 1.22660 1.20174 1.22528 0.92030 1.00581 0.96118 0.90927 1.22739 0.98737 1.02258 0.91158 1.22596 0.83022 1.01996 0.95384 1.48567 1.11915 1.64719 1.08514 1.18212 0.81922 0.76707 0.87685 1.90799 1.37608 1.53637 1.63526 1.20246 1.00088 0.96539 0.92293 1.22847 0.97833 0.99867 0.94119 1.23632 0.92588 0.93969 0.93535 1.67888 1.09051 1.02263 1.39100 1.19116 0.98543 0.95846 0.87730 1.21161 0.97297 0.91333 1.01876 1.21335 0.97584 1.00010 0.92249 1.21342 0.97522 0.97016 0.96664 1.21179 0.98966 0.94612 0.99584 1.18787 1.00224 0.95066 0.95042 1.22130 0.97151 1.00536 0.80037 0.89782 0.94796 0.94115 0.79956 0.94326 0.87026 0.88441 0.90113 0.87671 0.80769 0.77269 0.82302 0.81389 0.83459 0.87263 0.91920 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.27 71.98 0.67 -4.03 16 2 C 0.18 6.37 2.43 44.99 0.11 6.48 16 3 H 0.05 1.74 8.01 -2.39 -0.02 1.73 16 4 N -0.74 -36.22 4.97 -322.93 -1.61 -37.82 16 5 C -0.23 -12.67 9.93 84.03 0.83 -11.84 16 6 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 7 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 8 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 9 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 C -0.09 -2.68 2.67 -9.32 -0.02 -2.71 16 14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.11 -1.92 5.28 31.78 0.17 -1.75 16 16 C 0.09 1.55 5.67 86.73 0.49 2.04 16 17 N -0.61 -16.95 3.32 -814.69 -2.71 -19.66 16 18 C 0.57 18.25 6.93 86.80 0.60 18.85 16 19 O -0.58 -24.14 15.63 -3.85 -0.06 -24.20 16 20 C -0.08 -2.06 5.46 -19.68 -0.11 -2.17 16 21 C -0.13 -2.07 8.64 22.67 0.20 -1.88 16 22 C 0.13 1.91 11.14 85.07 0.95 2.86 16 23 N -0.47 -9.54 10.30 -188.73 -1.94 -11.48 16 24 C 0.11 2.50 6.61 40.34 0.27 2.77 16 25 C -0.10 -1.77 9.98 22.37 0.22 -1.55 16 26 C -0.09 -1.46 9.94 22.03 0.22 -1.24 16 27 C -0.11 -2.22 9.96 22.07 0.22 -2.00 16 28 C -0.12 -3.48 9.20 22.26 0.20 -3.28 16 29 C -0.09 -2.39 5.76 -21.09 -0.12 -2.51 16 30 C 0.12 4.25 6.22 86.94 0.54 4.79 16 31 H 0.08 1.82 7.27 -2.39 -0.02 1.80 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.37 19.99 7.80 -92.71 -0.72 19.27 16 35 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.11 1.40 8.11 -2.39 -0.02 1.38 16 37 H 0.10 1.43 8.04 -2.39 -0.02 1.41 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 1.09 6.04 -2.39 -0.01 1.07 16 40 H 0.18 1.71 6.00 -2.91 -0.02 1.69 16 41 H 0.21 0.99 8.06 -2.91 -0.02 0.97 16 42 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.11 3.66 6.25 -2.91 -0.02 3.64 16 46 H 0.06 2.26 7.99 -2.38 -0.02 2.24 16 47 H 0.04 1.68 8.08 -2.39 -0.02 1.66 16 Total: -1.00 -79.91 383.30 2.16 -77.74 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.27 Total: 28.32 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.90 Total: -1.31 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.98 Total: -129.43 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -79.91 2.16 -77.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484340026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.928 kcal (2) G-P(sol) polarization free energy of solvation -79.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds