Wall clock time and date at job start Tue Mar 31 2020 23:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47314 * 2 1 4 4 N 1.46504 * 109.46862 * 119.99702 * 2 1 3 5 5 C 1.36934 * 120.00025 * 275.00163 * 4 2 1 6 6 H 1.08004 * 120.00252 * 359.97438 * 5 4 2 7 7 C 1.38818 * 119.99856 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00203 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99858 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47435 * 59.99447 * 9 7 5 11 11 H 1.48498 * 109.47180 * 179.97438 * 9 7 5 12 12 H 1.48511 * 109.46880 * 299.99802 * 9 7 5 13 13 C 1.52991 * 109.47231 * 239.99795 * 2 1 3 14 14 H 1.09001 * 110.88604 * 299.80854 * 13 2 1 15 15 C 1.55163 * 111.00381 * 175.88908 * 13 2 1 16 16 C 1.54323 * 102.93947 * 206.42205 * 15 13 2 17 17 N 1.47024 * 107.27401 * 22.19308 * 16 15 13 18 18 C 1.34777 * 125.65007 * 181.09653 * 17 16 15 19 19 O 1.21537 * 120.00084 * 184.84039 * 18 17 16 20 20 C 1.47898 * 119.99908 * 4.83868 * 18 17 16 21 21 C 1.38894 * 121.11545 * 312.66831 * 20 18 17 22 22 C 1.39273 * 119.57830 * 179.69293 * 21 20 18 23 23 N 1.30987 * 121.88504 * 0.62479 * 22 21 20 24 24 C 1.33539 * 121.82916 * 359.67310 * 23 22 21 25 25 C 1.40709 * 120.97029 * 180.02562 * 24 23 22 26 26 C 1.36063 * 119.73843 * 179.97438 * 25 24 23 27 27 C 1.39350 * 121.05533 * 0.02562 * 26 25 24 28 28 C 1.36248 * 120.83889 * 359.93184 * 27 26 25 29 29 C 1.40098 * 119.64313 * 0.08555 * 28 27 26 30 30 C 1.47424 * 108.70253 * 1.05697 * 17 16 15 31 31 H 1.08994 * 109.47025 * 174.88159 * 1 2 3 32 32 H 1.09006 * 109.46680 * 54.87964 * 1 2 3 33 33 H 1.08999 * 109.47174 * 294.88297 * 1 2 3 34 34 H 0.96997 * 119.99776 * 94.99765 * 4 2 1 35 35 H 0.97001 * 120.00103 * 179.97438 * 8 7 5 36 36 H 1.08994 * 110.71480 * 324.77944 * 15 13 2 37 37 H 1.08999 * 110.71902 * 88.05865 * 15 13 2 38 38 H 1.09000 * 109.88309 * 262.77036 * 16 15 13 39 39 H 1.09003 * 110.01307 * 141.68108 * 16 15 13 40 40 H 1.08003 * 120.20678 * 359.97438 * 21 20 18 41 41 H 1.08000 * 119.05408 * 180.30126 * 22 21 20 42 42 H 1.08000 * 120.13412 * 359.95618 * 25 24 23 43 43 H 1.08007 * 119.47323 * 180.02562 * 26 25 24 44 44 H 1.07999 * 119.57800 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.17762 * 180.02562 * 28 27 26 46 46 H 1.09004 * 110.36889 * 217.04069 * 30 17 16 47 47 H 1.08994 * 110.46312 * 94.75646 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1490 -0.0074 2.3758 6 1 1.8926 1.0406 2.4242 7 6 2.6122 -0.6617 3.5091 8 7 2.9252 -1.9387 3.4501 9 14 2.7898 0.2701 5.1184 10 1 1.4671 0.8060 5.5288 11 1 3.2989 -0.6482 6.1685 12 1 3.7444 1.3933 4.9373 13 6 2.0400 -0.7212 -1.2491 14 1 1.6923 -1.7541 -1.2707 15 6 3.5876 -0.6527 -1.3380 16 6 3.8522 -0.7703 -2.8539 17 7 2.6219 -0.3576 -3.5451 18 6 2.4393 -0.3399 -4.8803 19 8 1.4087 0.1041 -5.3469 20 6 3.4932 -0.8609 -5.7778 21 6 4.8226 -0.4941 -5.6125 22 6 5.7898 -1.0089 -6.4721 23 7 5.4831 -1.8264 -7.4486 24 6 4.2258 -2.2175 -7.6709 25 6 3.9167 -3.0968 -8.7250 26 6 2.6269 -3.4794 -8.9286 27 6 1.6010 -3.0137 -8.1086 28 6 1.8628 -2.1620 -7.0779 29 6 3.1794 -1.7468 -6.8394 30 6 1.6208 0.0328 -2.5358 31 1 -0.3633 -1.0235 -0.0917 32 1 -0.3633 0.5913 -0.8406 33 1 -0.3633 0.4324 0.9323 34 1 2.2489 -1.6317 1.1527 35 1 3.2492 -2.3957 4.2420 36 1 3.9539 0.2999 -0.9555 37 1 4.0420 -1.4855 -0.8014 38 1 4.0925 -1.8024 -3.1092 39 1 4.6757 -0.1163 -3.1407 40 1 5.1050 0.1826 -4.8194 41 1 6.8216 -0.7219 -6.3328 42 1 4.7000 -3.4664 -9.3702 43 1 2.3946 -4.1549 -9.7387 44 1 0.5856 -3.3326 -8.2920 45 1 1.0595 -1.8080 -6.4488 46 1 0.6243 -0.2779 -2.8498 47 1 1.6470 1.1097 -2.3698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484340027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:34 Heat of formation + Delta-G solvation = 37.342144 kcal Electronic energy + Delta-G solvation = -28695.183589 eV Core-core repulsion = 24843.035095 eV Total energy + Delta-G solvation = -3852.148495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40196 -39.89168 -37.89954 -37.38628 -35.31394 -33.81546 -32.46104 -30.93016 -30.77885 -30.20719 -29.27506 -27.55685 -25.71540 -24.32264 -23.93221 -23.36706 -22.36971 -21.51699 -19.78062 -19.71882 -18.59547 -17.74789 -17.49642 -17.08985 -16.33446 -16.08880 -15.54520 -15.05427 -14.75200 -14.61752 -14.26594 -14.23086 -14.16245 -13.93600 -13.51190 -13.33892 -13.20531 -12.80215 -12.62257 -12.47350 -12.19400 -12.11227 -11.87720 -11.78099 -11.66326 -11.28042 -10.91668 -10.87399 -10.77293 -10.64919 -10.51414 -10.41022 -10.28298 -9.93807 -9.70103 -9.65313 -9.12088 -8.95541 -8.78861 -8.56257 -7.01520 -5.81170 -3.09872 -0.12665 0.47160 1.46315 2.42361 2.60350 2.81123 3.40532 3.45754 3.46169 3.78687 3.91485 4.05157 4.33566 4.39255 4.51487 4.52330 4.69098 4.74248 4.78164 4.88229 4.96125 5.05890 5.16301 5.23927 5.28012 5.40704 5.49029 5.50065 5.58884 5.70491 5.72027 5.80455 5.81734 5.88761 5.98891 5.99751 6.06704 6.15142 6.16627 6.18336 6.31102 6.38111 6.50386 6.51139 6.58596 6.81479 7.04724 7.29729 7.53650 7.65567 7.85664 8.37226 9.48752 10.05246 10.40229 11.41303 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.002309 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.648365 B =12122.582505 C =12632.266170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.115 4.115 16 C 0.092 3.908 17 N -0.605 5.605 18 C 0.572 3.428 19 O -0.529 6.529 20 C -0.056 4.056 21 C -0.145 4.145 22 C 0.131 3.869 23 N -0.463 5.463 24 C 0.127 3.873 25 C -0.096 4.096 26 C -0.098 4.098 27 C -0.114 4.114 28 C -0.090 4.090 29 C -0.068 4.068 30 C 0.114 3.886 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.138 0.862 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.139 0.861 46 H 0.079 0.921 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 -0.951 -23.412 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.030 4.030 17 N -0.338 5.338 18 C 0.360 3.640 19 O -0.406 6.406 20 C -0.067 4.067 21 C -0.166 4.166 22 C -0.041 4.041 23 N -0.172 5.172 24 C 0.005 3.995 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.132 4.132 28 C -0.108 4.108 29 C -0.071 4.071 30 C -0.008 4.008 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.165 0.835 41 H 0.184 0.816 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.157 0.843 46 H 0.097 0.903 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.085 -0.972 -24.186 24.402 hybrid contribution -0.404 0.497 1.604 1.727 sum 2.681 -0.475 -22.582 22.746 Atomic orbital electron populations 1.22503 0.99220 1.00645 1.00504 1.20123 0.91823 0.95149 0.85365 0.93223 1.42353 1.78189 1.10647 1.05094 1.19162 1.36600 0.93825 0.87295 0.91274 1.24717 1.02174 0.95946 0.97989 1.69639 1.50823 1.08641 1.29022 0.86301 0.77784 0.78611 0.83673 1.21321 1.21743 1.21292 1.22693 0.95191 1.00324 0.94018 0.89996 1.22594 0.96430 1.04383 0.91917 1.22397 0.86493 0.99995 0.94148 1.48493 1.16427 1.64414 1.04439 1.17693 0.86351 0.79057 0.80890 1.90800 1.28217 1.46540 1.75065 1.20337 0.94120 0.96918 0.95363 1.22534 0.92148 1.00827 1.01053 1.22925 1.00030 0.91738 0.89404 1.67811 1.19580 1.11381 1.18394 1.18842 0.88027 0.97066 0.95521 1.20810 0.97185 0.96871 0.96542 1.20973 0.92455 0.99132 0.99216 1.21024 0.99849 0.97208 0.95137 1.21233 0.95441 0.96126 0.98021 1.18595 0.95332 0.97763 0.95421 1.22388 0.92008 0.99702 0.86676 0.93570 0.94391 0.92486 0.78294 0.93470 0.89992 0.89229 0.91356 0.91200 0.83528 0.81599 0.84462 0.85051 0.85198 0.84283 0.90303 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.23 37.16 0.34 -2.53 16 2 C 0.19 3.33 2.40 -67.93 -0.16 3.17 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -16.63 4.89 -53.42 -0.26 -16.89 16 5 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 6 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.07 13.06 55.49 0.72 -26.34 16 9 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.10 -1.50 2.63 -88.47 -0.23 -1.73 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -1.55 6.20 -24.89 -0.15 -1.70 16 16 C 0.09 1.02 5.67 -3.06 -0.02 1.00 16 17 N -0.61 -7.78 3.33 -171.61 -0.57 -8.35 16 18 C 0.57 7.96 6.93 -12.30 -0.09 7.88 16 19 O -0.53 -8.80 15.62 5.33 0.08 -8.72 16 20 C -0.06 -0.69 5.46 -104.34 -0.57 -1.26 16 21 C -0.15 -1.40 8.64 -38.95 -0.34 -1.73 16 22 C 0.13 1.19 11.14 -17.53 -0.20 1.00 16 23 N -0.46 -5.24 10.30 -11.01 -0.11 -5.35 16 24 C 0.13 1.49 6.61 -84.87 -0.56 0.93 16 25 C -0.10 -0.91 9.98 -39.43 -0.39 -1.30 16 26 C -0.10 -0.79 9.94 -39.95 -0.40 -1.19 16 27 C -0.11 -1.04 9.96 -39.88 -0.40 -1.44 16 28 C -0.09 -1.05 9.20 -39.60 -0.36 -1.41 16 29 C -0.07 -0.85 5.76 -106.52 -0.61 -1.47 16 30 C 0.11 1.54 5.49 -2.53 -0.01 1.52 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.55 7.59 -51.93 -0.39 0.15 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.38 9.46 7.80 -40.82 -0.32 9.14 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.63 6.05 -51.93 -0.31 0.31 16 40 H 0.15 1.10 6.00 -52.48 -0.32 0.78 16 41 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.14 1.76 6.24 -52.49 -0.33 1.43 16 46 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 47 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -31.85 383.73 -10.47 -42.32 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.69 Total: 7.94 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -4.40 Total: -7.07 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.22 Total: -56.94 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.85 -10.47 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484340027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.660 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds