Wall clock time and date at job start Tue Mar 31 2020 23:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47314 * 2 1 4 4 N 1.46504 * 109.46862 * 119.99702 * 2 1 3 5 5 C 1.36934 * 120.00025 * 275.00163 * 4 2 1 6 6 H 1.08004 * 120.00252 * 359.97438 * 5 4 2 7 7 C 1.38818 * 119.99856 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00203 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99858 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47435 * 59.99447 * 9 7 5 11 11 H 1.48498 * 109.47180 * 179.97438 * 9 7 5 12 12 H 1.48511 * 109.46880 * 299.99802 * 9 7 5 13 13 C 1.52991 * 109.47231 * 239.99795 * 2 1 3 14 14 H 1.09001 * 110.88604 * 299.80854 * 13 2 1 15 15 C 1.55163 * 111.00381 * 175.88908 * 13 2 1 16 16 C 1.54323 * 102.93947 * 206.42205 * 15 13 2 17 17 N 1.47024 * 107.27401 * 22.19308 * 16 15 13 18 18 C 1.34777 * 125.65007 * 181.09653 * 17 16 15 19 19 O 1.21537 * 120.00084 * 184.84039 * 18 17 16 20 20 C 1.47898 * 119.99908 * 4.83868 * 18 17 16 21 21 C 1.38894 * 121.11545 * 312.66831 * 20 18 17 22 22 C 1.39273 * 119.57830 * 179.69293 * 21 20 18 23 23 N 1.30987 * 121.88504 * 0.62479 * 22 21 20 24 24 C 1.33539 * 121.82916 * 359.67310 * 23 22 21 25 25 C 1.40709 * 120.97029 * 180.02562 * 24 23 22 26 26 C 1.36063 * 119.73843 * 179.97438 * 25 24 23 27 27 C 1.39350 * 121.05533 * 0.02562 * 26 25 24 28 28 C 1.36248 * 120.83889 * 359.93184 * 27 26 25 29 29 C 1.40098 * 119.64313 * 0.08555 * 28 27 26 30 30 C 1.47424 * 108.70253 * 1.05697 * 17 16 15 31 31 H 1.08994 * 109.47025 * 174.88159 * 1 2 3 32 32 H 1.09006 * 109.46680 * 54.87964 * 1 2 3 33 33 H 1.08999 * 109.47174 * 294.88297 * 1 2 3 34 34 H 0.96997 * 119.99776 * 94.99765 * 4 2 1 35 35 H 0.97001 * 120.00103 * 179.97438 * 8 7 5 36 36 H 1.08994 * 110.71480 * 324.77944 * 15 13 2 37 37 H 1.08999 * 110.71902 * 88.05865 * 15 13 2 38 38 H 1.09000 * 109.88309 * 262.77036 * 16 15 13 39 39 H 1.09003 * 110.01307 * 141.68108 * 16 15 13 40 40 H 1.08003 * 120.20678 * 359.97438 * 21 20 18 41 41 H 1.08000 * 119.05408 * 180.30126 * 22 21 20 42 42 H 1.08000 * 120.13412 * 359.95618 * 25 24 23 43 43 H 1.08007 * 119.47323 * 180.02562 * 26 25 24 44 44 H 1.07999 * 119.57800 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.17762 * 180.02562 * 28 27 26 46 46 H 1.09004 * 110.36889 * 217.04069 * 30 17 16 47 47 H 1.08994 * 110.46312 * 94.75646 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1490 -0.0074 2.3758 6 1 1.8926 1.0406 2.4242 7 6 2.6122 -0.6617 3.5091 8 7 2.9252 -1.9387 3.4501 9 14 2.7898 0.2701 5.1184 10 1 1.4671 0.8060 5.5288 11 1 3.2989 -0.6482 6.1685 12 1 3.7444 1.3933 4.9373 13 6 2.0400 -0.7212 -1.2491 14 1 1.6923 -1.7541 -1.2707 15 6 3.5876 -0.6527 -1.3380 16 6 3.8522 -0.7703 -2.8539 17 7 2.6219 -0.3576 -3.5451 18 6 2.4393 -0.3399 -4.8803 19 8 1.4087 0.1041 -5.3469 20 6 3.4932 -0.8609 -5.7778 21 6 4.8226 -0.4941 -5.6125 22 6 5.7898 -1.0089 -6.4721 23 7 5.4831 -1.8264 -7.4486 24 6 4.2258 -2.2175 -7.6709 25 6 3.9167 -3.0968 -8.7250 26 6 2.6269 -3.4794 -8.9286 27 6 1.6010 -3.0137 -8.1086 28 6 1.8628 -2.1620 -7.0779 29 6 3.1794 -1.7468 -6.8394 30 6 1.6208 0.0328 -2.5358 31 1 -0.3633 -1.0235 -0.0917 32 1 -0.3633 0.5913 -0.8406 33 1 -0.3633 0.4324 0.9323 34 1 2.2489 -1.6317 1.1527 35 1 3.2492 -2.3957 4.2420 36 1 3.9539 0.2999 -0.9555 37 1 4.0420 -1.4855 -0.8014 38 1 4.0925 -1.8024 -3.1092 39 1 4.6757 -0.1163 -3.1407 40 1 5.1050 0.1826 -4.8194 41 1 6.8216 -0.7219 -6.3328 42 1 4.7000 -3.4664 -9.3702 43 1 2.3946 -4.1549 -9.7387 44 1 0.5856 -3.3326 -8.2920 45 1 1.0595 -1.8080 -6.4488 46 1 0.6243 -0.2779 -2.8498 47 1 1.6470 1.1097 -2.3698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484340027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:33 Heat of formation + Delta-G solvation = 18.704573 kcal Electronic energy + Delta-G solvation = -28695.991775 eV Core-core repulsion = 24843.035095 eV Total energy + Delta-G solvation = -3852.956680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.23614 -40.89985 -39.10250 -38.10930 -36.82883 -34.75028 -34.11429 -32.06264 -31.62077 -31.07018 -30.76541 -28.87597 -26.77122 -25.85667 -24.68872 -24.49829 -23.30956 -22.82568 -21.11101 -20.70996 -19.42683 -19.06201 -18.55270 -18.31328 -17.38814 -17.18933 -16.53287 -16.34760 -15.76131 -15.62631 -15.46090 -15.31293 -15.01081 -14.95039 -14.86441 -14.65541 -14.27367 -13.98175 -13.88117 -13.75728 -13.41872 -13.20748 -12.91920 -12.81838 -12.74709 -12.58261 -12.37355 -12.32341 -12.21888 -11.99295 -11.79156 -11.63227 -11.55285 -11.45825 -11.36790 -10.89741 -10.52711 -9.84197 -9.83199 -9.33630 -8.96530 -7.89701 -5.16580 -0.90887 -0.25951 0.64962 1.43702 1.50205 1.51586 1.57404 1.73443 1.95182 2.59163 3.01838 3.09245 3.28119 3.43741 3.53273 3.60436 3.62696 3.64768 3.80690 3.84784 4.06048 4.16415 4.20314 4.25811 4.32045 4.37749 4.47429 4.49192 4.52540 4.60193 4.66022 4.71698 4.77413 4.86010 4.94883 4.98018 5.02708 5.05634 5.09117 5.19331 5.29807 5.31310 5.38022 5.42978 5.44374 5.56257 5.60925 5.81808 6.26217 6.32645 6.78620 6.81058 7.39559 8.15434 8.38836 9.33385 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020959 B = 0.002309 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.648365 B =12122.582505 C =12632.266170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.050 0.950 4 N -0.730 5.730 5 C -0.231 4.231 6 H 0.074 0.926 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.283 1.283 11 H -0.299 1.299 12 H -0.278 1.278 13 C -0.094 4.094 14 H 0.074 0.926 15 C -0.111 4.111 16 C 0.099 3.901 17 N -0.604 5.604 18 C 0.574 3.426 19 O -0.564 6.564 20 C -0.082 4.082 21 C -0.132 4.132 22 C 0.131 3.869 23 N -0.478 5.478 24 C 0.106 3.894 25 C -0.102 4.102 26 C -0.092 4.092 27 C -0.106 4.106 28 C -0.120 4.120 29 C -0.087 4.087 30 C 0.121 3.879 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.170 0.830 41 H 0.205 0.795 42 H 0.155 0.845 43 H 0.168 0.832 44 H 0.153 0.847 45 H 0.120 0.880 46 H 0.074 0.926 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 -0.498 -25.110 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.092 0.908 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.794 3.206 10 H -0.209 1.209 11 H -0.226 1.226 12 H -0.204 1.204 13 C -0.114 4.114 14 H 0.093 0.907 15 C -0.149 4.149 16 C -0.023 4.023 17 N -0.336 5.336 18 C 0.363 3.637 19 O -0.444 6.444 20 C -0.093 4.093 21 C -0.152 4.152 22 C -0.041 4.041 23 N -0.186 5.186 24 C -0.015 4.015 25 C -0.120 4.120 26 C -0.112 4.112 27 C -0.124 4.124 28 C -0.139 4.139 29 C -0.090 4.090 30 C -0.002 4.002 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.188 0.812 41 H 0.221 0.779 42 H 0.172 0.828 43 H 0.185 0.815 44 H 0.170 0.830 45 H 0.138 0.862 46 H 0.092 0.908 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.168 -0.490 -25.911 26.249 hybrid contribution -0.775 0.368 2.034 2.207 sum 3.394 -0.122 -23.877 24.118 Atomic orbital electron populations 1.22379 0.98255 1.00806 1.00648 1.20291 0.92309 0.95004 0.84922 0.93160 1.42504 1.78332 1.10264 1.05916 1.19514 1.34444 0.94059 0.88277 0.90825 1.25424 1.03333 0.96776 1.01036 1.69787 1.52788 1.10051 1.29290 0.85344 0.77768 0.77422 0.80017 1.20943 1.22578 1.20380 1.22468 0.96274 0.99557 0.93082 0.90735 1.22507 0.95126 1.03658 0.93630 1.22436 0.86512 1.01255 0.92064 1.48490 1.16761 1.64109 1.04222 1.17957 0.86293 0.78360 0.81048 1.90770 1.29809 1.48180 1.75674 1.20295 0.94707 0.98454 0.95854 1.22821 0.91041 1.00076 1.01234 1.23553 1.01548 0.90631 0.88331 1.67872 1.19360 1.12088 1.19269 1.19164 0.88100 0.97979 0.96294 1.21141 0.98353 0.96376 0.96162 1.21350 0.91533 0.98824 0.99468 1.21366 1.01435 0.95663 0.93930 1.21214 0.95011 0.98173 0.99486 1.18783 0.95863 0.98385 0.95967 1.22245 0.92089 0.99749 0.86104 0.93945 0.91496 0.94482 0.79512 0.94233 0.90331 0.90439 0.90625 0.88238 0.81249 0.77887 0.82751 0.81491 0.82951 0.86216 0.90777 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 9.23 71.98 0.66 -4.74 16 2 C 0.18 6.51 2.40 44.99 0.11 6.62 16 3 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 4 N -0.73 -33.90 4.89 -322.93 -1.58 -35.47 16 5 C -0.23 -12.10 9.93 84.04 0.83 -11.27 16 6 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 7 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 8 N -0.97 -57.16 13.06 21.65 0.28 -56.88 16 9 Si 0.96 44.84 29.55 68.60 2.03 46.87 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 C -0.09 -2.71 2.63 -9.40 -0.02 -2.74 16 14 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 15 C -0.11 -2.89 6.20 31.78 0.20 -2.69 16 16 C 0.10 2.01 5.67 86.73 0.49 2.51 16 17 N -0.60 -14.95 3.33 -815.14 -2.71 -17.66 16 18 C 0.57 15.88 6.93 86.80 0.60 16.48 16 19 O -0.56 -19.21 15.62 -3.83 -0.06 -19.27 16 20 C -0.08 -1.96 5.46 -19.68 -0.11 -2.06 16 21 C -0.13 -2.25 8.64 22.68 0.20 -2.05 16 22 C 0.13 2.06 11.14 85.07 0.95 3.00 16 23 N -0.48 -9.96 10.30 -188.74 -1.94 -11.91 16 24 C 0.11 2.38 6.61 40.34 0.27 2.64 16 25 C -0.10 -1.76 9.98 22.37 0.22 -1.54 16 26 C -0.09 -1.29 9.94 22.03 0.22 -1.07 16 27 C -0.11 -1.82 9.96 22.07 0.22 -1.60 16 28 C -0.12 -2.86 9.20 22.26 0.20 -2.66 16 29 C -0.09 -2.17 5.76 -21.09 -0.12 -2.29 16 30 C 0.12 3.15 5.49 86.86 0.48 3.63 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.84 7.59 -2.38 -0.02 1.83 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.37 18.77 7.80 -92.71 -0.72 18.04 16 35 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.08 2.10 8.04 -2.39 -0.02 2.08 16 37 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 1.47 6.05 -2.39 -0.01 1.45 16 40 H 0.17 1.97 6.00 -2.91 -0.02 1.95 16 41 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.12 3.24 6.24 -2.91 -0.02 3.22 16 46 H 0.07 2.02 8.09 -2.38 -0.02 2.00 16 47 H 0.08 2.01 8.03 -2.39 -0.02 1.99 16 Total: -1.00 -70.47 383.73 2.15 -68.32 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.27 Total: 29.41 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.86 Total: -3.41 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -5.95 Total: -121.92 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.06 Total: -19.27 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.47 2.15 -68.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484340027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.029 kcal (2) G-P(sol) polarization free energy of solvation -70.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds