Wall clock time and date at job start Tue Mar 31 2020 23:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46899 * 2 1 4 4 N 1.46501 * 109.46832 * 240.00573 * 2 1 3 5 5 C 1.36930 * 120.00313 * 85.27914 * 4 2 1 6 6 H 1.08003 * 120.00078 * 359.71887 * 5 4 2 7 7 C 1.38812 * 120.00155 * 179.72047 * 5 4 2 8 8 N 1.31614 * 120.00322 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00005 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46848 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46889 * 120.00101 * 9 7 5 12 12 H 1.48499 * 109.46951 * 240.00141 * 9 7 5 13 13 C 1.52995 * 109.46830 * 120.00483 * 2 1 3 14 14 H 1.09008 * 110.88358 * 179.29675 * 13 2 1 15 15 C 1.55154 * 111.00545 * 303.17864 * 13 2 1 16 16 C 1.54372 * 102.92316 * 153.55160 * 15 13 2 17 17 N 1.47031 * 107.28511 * 337.85971 * 16 15 13 18 18 C 1.34772 * 125.64708 * 178.87276 * 17 16 15 19 19 O 1.21593 * 119.99833 * 175.17851 * 18 17 16 20 20 C 1.47553 * 120.00094 * 355.17705 * 18 17 16 21 21 C 1.38695 * 120.38616 * 48.76898 * 20 18 17 22 22 C 1.38970 * 120.53103 * 179.69987 * 21 20 18 23 23 C 1.36205 * 121.24412 * 0.57841 * 22 21 20 24 24 C 1.40716 * 120.19922 * 359.72272 * 23 22 21 25 25 N 1.33682 * 120.95111 * 179.97438 * 24 23 22 26 26 C 1.31064 * 121.34754 * 180.02562 * 25 24 23 27 27 C 1.39345 * 121.70342 * 0.02562 * 26 25 24 28 28 C 1.36668 * 119.87068 * 359.97438 * 27 26 25 29 29 C 1.40479 * 118.16793 * 0.04085 * 28 27 26 30 30 C 1.47425 * 108.70073 * 358.90979 * 17 16 15 31 31 H 1.09000 * 109.47326 * 299.99597 * 1 2 3 32 32 H 1.09001 * 109.46907 * 59.99978 * 1 2 3 33 33 H 1.09005 * 109.47113 * 179.97438 * 1 2 3 34 34 H 0.97009 * 119.99451 * 264.99608 * 4 2 1 35 35 H 0.96998 * 120.00714 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.71878 * 271.93954 * 15 13 2 37 37 H 1.08993 * 110.71893 * 35.21395 * 15 13 2 38 38 H 1.09001 * 109.89942 * 218.42870 * 16 15 13 39 39 H 1.08996 * 109.97909 * 97.33905 * 16 15 13 40 40 H 1.07998 * 119.73217 * 359.97438 * 21 20 18 41 41 H 1.08008 * 119.37594 * 180.28104 * 22 21 20 42 42 H 1.07996 * 119.90099 * 179.70784 * 23 22 21 43 43 H 1.07995 * 119.15175 * 180.02562 * 26 25 24 44 44 H 1.08006 * 120.06244 * 180.02562 * 27 26 25 45 45 H 1.07993 * 120.91875 * 180.02562 * 28 27 26 46 46 H 1.08997 * 110.36582 * 265.28293 * 30 17 16 47 47 H 1.09005 * 110.46002 * 143.01565 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1545 -0.0060 -2.3743 6 1 1.8977 1.0420 -2.4228 7 6 2.6227 -0.6589 -3.5063 8 7 2.9352 -1.9360 -3.4475 9 14 2.8078 0.2749 -5.1137 10 1 2.3922 1.6869 -4.9165 11 1 4.2267 0.2332 -5.5497 12 1 1.9520 -0.3531 -6.1522 13 6 2.0400 -0.7213 1.2492 14 1 3.1296 -0.7456 1.2662 15 6 1.4780 -0.0658 2.5383 16 6 1.4924 -1.2300 3.5520 17 7 1.4918 -2.4814 2.7802 18 6 1.5239 -3.7246 3.2997 19 8 1.4314 -4.6916 2.5684 20 6 1.6712 -3.9122 4.7558 21 6 0.8702 -3.2037 5.6390 22 6 1.0021 -3.3827 7.0108 23 6 1.9232 -4.2440 7.5256 24 6 2.7617 -4.9793 6.6676 25 7 3.6712 -5.8284 7.1566 26 6 4.4565 -6.5168 6.3646 27 6 4.3840 -6.3987 4.9781 28 6 3.4754 -5.5477 4.4140 29 6 2.6367 -4.8122 5.2679 30 6 1.4512 -2.1510 1.3441 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6317 -1.1527 35 1 3.2627 -2.3922 -4.2384 36 1 2.1253 0.7451 2.8722 37 1 0.4612 0.2922 2.3770 38 1 0.6049 -1.1833 4.1832 39 1 2.3893 -1.1754 4.1690 40 1 0.1350 -2.5107 5.2575 41 1 0.3655 -2.8247 7.6816 42 1 2.0103 -4.3627 8.5955 43 1 5.1785 -7.1931 6.7978 44 1 5.0439 -6.9792 4.3504 45 1 3.4044 -5.4432 3.3415 46 1 0.4235 -2.1630 0.9810 47 1 2.0621 -2.8515 0.7745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484340960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:25 Heat of formation + Delta-G solvation = 42.816912 kcal Electronic energy + Delta-G solvation = -28930.667811 eV Core-core repulsion = 25078.756720 eV Total energy + Delta-G solvation = -3851.911091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.31507 -39.94419 -38.01823 -37.12949 -35.20933 -33.66107 -32.60413 -30.91920 -30.87111 -30.23031 -28.75386 -27.70236 -25.27398 -24.43389 -23.88354 -23.77263 -22.57689 -21.78963 -19.68620 -18.90987 -18.60018 -17.51492 -17.28225 -17.11948 -16.57763 -16.07515 -15.49432 -15.01545 -14.80652 -14.66760 -14.48170 -14.12450 -13.96621 -13.61749 -13.56384 -13.38953 -13.27439 -12.87262 -12.73535 -12.31727 -12.24851 -12.09971 -12.01785 -11.70801 -11.50657 -11.14164 -10.97374 -10.88750 -10.80323 -10.59587 -10.34664 -10.27512 -10.21606 -9.90169 -9.65959 -9.59434 -9.10658 -8.94328 -8.64442 -8.49260 -6.99110 -5.77641 -3.07212 -0.05864 0.51872 1.53920 2.42242 2.71500 2.98171 3.42188 3.47528 3.50100 3.82419 3.96991 4.15748 4.41350 4.47995 4.52878 4.57751 4.61697 4.73393 4.79863 4.84835 4.94896 5.03390 5.14740 5.29671 5.39591 5.48300 5.53330 5.57002 5.59416 5.67291 5.72566 5.75572 5.81151 5.89423 5.95594 6.02058 6.04299 6.11934 6.16517 6.18836 6.26807 6.41237 6.47557 6.49775 6.65336 6.79371 7.07059 7.45705 7.60052 7.68946 8.04383 8.40195 9.51575 10.08259 10.42483 11.44803 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.002566 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.604194 B =10907.897577 C =12033.951920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.185 3.815 3 H 0.053 0.947 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.084 0.916 15 C -0.131 4.131 16 C 0.097 3.903 17 N -0.608 5.608 18 C 0.569 3.431 19 O -0.528 6.528 20 C -0.094 4.094 21 C -0.085 4.085 22 C -0.105 4.105 23 C -0.076 4.076 24 C 0.123 3.877 25 N -0.477 5.477 26 C 0.134 3.866 27 C -0.174 4.174 28 C -0.048 4.048 29 C -0.070 4.070 30 C 0.108 3.892 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.161 0.839 44 H 0.141 0.859 45 H 0.149 0.851 46 H 0.080 0.920 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -2.336 24.462 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.074 3.926 3 H 0.071 0.929 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.103 0.897 15 C -0.169 4.169 16 C -0.025 4.025 17 N -0.341 5.341 18 C 0.357 3.643 19 O -0.405 6.405 20 C -0.098 4.098 21 C -0.104 4.104 22 C -0.125 4.125 23 C -0.095 4.095 24 C 0.002 3.998 25 N -0.185 5.185 26 C -0.038 4.038 27 C -0.194 4.194 28 C -0.073 4.073 29 C -0.072 4.072 30 C -0.013 4.013 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.179 0.821 44 H 0.159 0.841 45 H 0.166 0.834 46 H 0.098 0.902 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.803 -2.818 24.876 25.100 hybrid contribution 0.126 0.189 -1.887 1.900 sum -1.677 -2.629 22.990 23.200 Atomic orbital electron populations 1.22626 0.99437 1.01044 1.00069 1.20075 0.91857 0.95334 0.85304 0.92940 1.42449 1.78149 1.10677 1.05367 1.19260 1.36474 0.93885 0.87429 0.91108 1.24748 1.02117 0.95963 0.98087 1.69666 1.50665 1.08668 1.28899 0.86146 0.77303 0.78778 0.84117 1.20585 1.21915 1.21898 1.22709 1.00690 0.93657 0.95151 0.89741 1.22847 1.03017 0.96541 0.94543 1.22231 1.01427 0.83886 0.94994 1.48509 1.71857 1.04774 1.08926 1.17771 0.77254 0.82162 0.87083 1.90838 1.49798 1.38894 1.60985 1.19903 0.98277 0.98338 0.93236 1.21482 0.98276 0.97571 0.93070 1.20823 0.98378 0.98416 0.94881 1.20944 0.93849 0.94642 1.00044 1.18804 0.95337 0.95737 0.89919 1.68050 1.04819 1.06380 1.39261 1.23007 0.95312 0.95155 0.90360 1.21997 1.00313 1.00508 0.96579 1.21769 0.91820 0.92416 1.01344 1.18567 0.96963 0.97605 0.94087 1.22533 1.02440 0.96795 0.79506 0.94098 0.92677 0.93100 0.78201 0.93520 0.89982 0.89581 0.91371 0.91434 0.84594 0.84524 0.84348 0.82150 0.84116 0.83383 0.90152 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 8.85 37.16 0.33 -2.51 16 2 C 0.18 3.36 2.84 -67.93 -0.19 3.17 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.72 -17.40 5.07 -53.43 -0.27 -17.68 16 5 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 9 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 C -0.10 -1.53 3.07 -88.48 -0.27 -1.80 16 14 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16 15 C -0.13 -1.41 6.31 -24.87 -0.16 -1.57 16 16 C 0.10 1.00 5.68 -3.03 -0.02 0.98 16 17 N -0.61 -8.43 3.33 -171.70 -0.57 -9.00 16 18 C 0.57 8.67 6.81 -12.46 -0.08 8.58 16 19 O -0.53 -9.94 15.67 5.28 0.08 -9.86 16 20 C -0.09 -1.19 5.41 -104.66 -0.57 -1.75 16 21 C -0.09 -0.81 8.51 -39.14 -0.33 -1.14 16 22 C -0.11 -0.82 9.92 -40.04 -0.40 -1.22 16 23 C -0.08 -0.71 9.96 -39.38 -0.39 -1.10 16 24 C 0.12 1.47 6.60 -84.88 -0.56 0.91 16 25 N -0.48 -5.57 10.34 -10.99 -0.11 -5.69 16 26 C 0.13 1.29 11.15 -17.47 -0.19 1.09 16 27 C -0.17 -1.75 10.03 -39.74 -0.40 -2.14 16 28 C -0.05 -0.61 9.26 -39.31 -0.36 -0.97 16 29 C -0.07 -0.90 5.76 -106.53 -0.61 -1.52 16 30 C 0.11 1.74 5.67 -2.53 -0.01 1.72 16 31 H 0.04 0.54 6.07 -51.93 -0.32 0.22 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.87 6.04 -51.93 -0.31 0.55 16 34 H 0.38 9.93 7.06 -40.82 -0.29 9.64 16 35 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.87 5.74 -51.93 -0.30 0.57 16 38 H 0.07 0.55 6.07 -51.93 -0.32 0.23 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.14 1.04 6.06 -52.49 -0.32 0.72 16 41 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 42 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 45 H 0.15 2.08 6.30 -52.49 -0.33 1.75 16 46 H 0.08 1.34 5.66 -51.93 -0.29 1.04 16 47 H 0.08 1.55 7.84 -51.93 -0.41 1.14 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -33.66 375.48 -10.22 -43.88 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.23 Total: 9.12 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -4.48 Total: -6.34 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.23 Total: -59.62 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.66 -10.22 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484340960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.693 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds