Wall clock time and date at job start Tue Mar 31 2020 23:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46899 * 2 1 4 4 N 1.46501 * 109.46832 * 240.00573 * 2 1 3 5 5 C 1.36930 * 120.00313 * 85.27914 * 4 2 1 6 6 H 1.08003 * 120.00078 * 359.71887 * 5 4 2 7 7 C 1.38812 * 120.00155 * 179.72047 * 5 4 2 8 8 N 1.31614 * 120.00322 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00005 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46848 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46889 * 120.00101 * 9 7 5 12 12 H 1.48499 * 109.46951 * 240.00141 * 9 7 5 13 13 C 1.52995 * 109.46830 * 120.00483 * 2 1 3 14 14 H 1.09008 * 110.88358 * 179.29675 * 13 2 1 15 15 C 1.55154 * 111.00545 * 303.17864 * 13 2 1 16 16 C 1.54372 * 102.92316 * 153.55160 * 15 13 2 17 17 N 1.47031 * 107.28511 * 337.85971 * 16 15 13 18 18 C 1.34772 * 125.64708 * 178.87276 * 17 16 15 19 19 O 1.21593 * 119.99833 * 175.17851 * 18 17 16 20 20 C 1.47553 * 120.00094 * 355.17705 * 18 17 16 21 21 C 1.38695 * 120.38616 * 48.76898 * 20 18 17 22 22 C 1.38970 * 120.53103 * 179.69987 * 21 20 18 23 23 C 1.36205 * 121.24412 * 0.57841 * 22 21 20 24 24 C 1.40716 * 120.19922 * 359.72272 * 23 22 21 25 25 N 1.33682 * 120.95111 * 179.97438 * 24 23 22 26 26 C 1.31064 * 121.34754 * 180.02562 * 25 24 23 27 27 C 1.39345 * 121.70342 * 0.02562 * 26 25 24 28 28 C 1.36668 * 119.87068 * 359.97438 * 27 26 25 29 29 C 1.40479 * 118.16793 * 0.04085 * 28 27 26 30 30 C 1.47425 * 108.70073 * 358.90979 * 17 16 15 31 31 H 1.09000 * 109.47326 * 299.99597 * 1 2 3 32 32 H 1.09001 * 109.46907 * 59.99978 * 1 2 3 33 33 H 1.09005 * 109.47113 * 179.97438 * 1 2 3 34 34 H 0.97009 * 119.99451 * 264.99608 * 4 2 1 35 35 H 0.96998 * 120.00714 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.71878 * 271.93954 * 15 13 2 37 37 H 1.08993 * 110.71893 * 35.21395 * 15 13 2 38 38 H 1.09001 * 109.89942 * 218.42870 * 16 15 13 39 39 H 1.08996 * 109.97909 * 97.33905 * 16 15 13 40 40 H 1.07998 * 119.73217 * 359.97438 * 21 20 18 41 41 H 1.08008 * 119.37594 * 180.28104 * 22 21 20 42 42 H 1.07996 * 119.90099 * 179.70784 * 23 22 21 43 43 H 1.07995 * 119.15175 * 180.02562 * 26 25 24 44 44 H 1.08006 * 120.06244 * 180.02562 * 27 26 25 45 45 H 1.07993 * 120.91875 * 180.02562 * 28 27 26 46 46 H 1.08997 * 110.36582 * 265.28293 * 30 17 16 47 47 H 1.09005 * 110.46002 * 143.01565 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1545 -0.0060 -2.3743 6 1 1.8977 1.0420 -2.4228 7 6 2.6227 -0.6589 -3.5063 8 7 2.9352 -1.9360 -3.4475 9 14 2.8078 0.2749 -5.1137 10 1 2.3922 1.6869 -4.9165 11 1 4.2267 0.2332 -5.5497 12 1 1.9520 -0.3531 -6.1522 13 6 2.0400 -0.7213 1.2492 14 1 3.1296 -0.7456 1.2662 15 6 1.4780 -0.0658 2.5383 16 6 1.4924 -1.2300 3.5520 17 7 1.4918 -2.4814 2.7802 18 6 1.5239 -3.7246 3.2997 19 8 1.4314 -4.6916 2.5684 20 6 1.6712 -3.9122 4.7558 21 6 0.8702 -3.2037 5.6390 22 6 1.0021 -3.3827 7.0108 23 6 1.9232 -4.2440 7.5256 24 6 2.7617 -4.9793 6.6676 25 7 3.6712 -5.8284 7.1566 26 6 4.4565 -6.5168 6.3646 27 6 4.3840 -6.3987 4.9781 28 6 3.4754 -5.5477 4.4140 29 6 2.6367 -4.8122 5.2679 30 6 1.4512 -2.1510 1.3441 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6317 -1.1527 35 1 3.2627 -2.3922 -4.2384 36 1 2.1253 0.7451 2.8722 37 1 0.4612 0.2922 2.3770 38 1 0.6049 -1.1833 4.1832 39 1 2.3893 -1.1754 4.1690 40 1 0.1350 -2.5107 5.2575 41 1 0.3655 -2.8247 7.6816 42 1 2.0103 -4.3627 8.5955 43 1 5.1785 -7.1931 6.7978 44 1 5.0439 -6.9792 4.3504 45 1 3.4044 -5.4432 3.3415 46 1 0.4235 -2.1630 0.9810 47 1 2.0621 -2.8515 0.7745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484340960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:24 Heat of formation + Delta-G solvation = 21.070269 kcal Electronic energy + Delta-G solvation = -28931.610816 eV Core-core repulsion = 25078.756720 eV Total energy + Delta-G solvation = -3852.854096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.18969 -41.00756 -39.24218 -37.94423 -36.76601 -34.55579 -34.29587 -32.26754 -31.63984 -31.20705 -30.22503 -29.01241 -26.42583 -25.85524 -25.10473 -24.58402 -23.64322 -23.01009 -20.69553 -20.27078 -19.53966 -19.07251 -18.32536 -18.11500 -17.56917 -17.28030 -16.69054 -16.43604 -15.84951 -15.65626 -15.43707 -15.37738 -15.12578 -15.08187 -14.83608 -14.42322 -14.30048 -14.02931 -13.82944 -13.59817 -13.48781 -13.18910 -12.97565 -12.82514 -12.81131 -12.63411 -12.35298 -12.22560 -12.13079 -12.12724 -11.67220 -11.62543 -11.43204 -11.41829 -11.30202 -10.92746 -10.53655 -9.85859 -9.76188 -9.34044 -9.00930 -7.93121 -5.21654 -0.86558 -0.24551 0.64466 1.46497 1.46776 1.47568 1.57072 1.76857 1.99879 2.56122 3.01424 3.21122 3.28322 3.40792 3.54898 3.61520 3.70892 3.74978 3.78224 3.92593 3.94460 4.09099 4.13285 4.27083 4.35938 4.38606 4.40814 4.48723 4.59990 4.64505 4.70978 4.72795 4.78466 4.91560 4.94210 4.97923 5.04957 5.08199 5.10655 5.20516 5.24715 5.28729 5.32348 5.40310 5.47612 5.54710 5.68172 5.75412 6.28915 6.37080 6.79721 6.91067 7.34349 8.12232 8.32961 9.30798 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.002566 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.604194 B =10907.897577 C =12033.951920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.178 3.822 3 H 0.058 0.942 4 N -0.741 5.741 5 C -0.231 4.231 6 H 0.081 0.919 7 C -0.082 4.082 8 N -0.974 5.974 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.297 1.297 12 H -0.298 1.298 13 C -0.095 4.095 14 H 0.068 0.932 15 C -0.117 4.117 16 C 0.093 3.907 17 N -0.606 5.606 18 C 0.566 3.434 19 O -0.582 6.582 20 C -0.125 4.125 21 C -0.066 4.066 22 C -0.093 4.093 23 C -0.074 4.074 24 C 0.102 3.898 25 N -0.489 5.489 26 C 0.132 3.868 27 C -0.165 4.165 28 C -0.083 4.083 29 C -0.088 4.088 30 C 0.114 3.886 31 H 0.086 0.914 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.160 0.840 41 H 0.182 0.818 42 H 0.161 0.839 43 H 0.198 0.802 44 H 0.163 0.837 45 H 0.120 0.880 46 H 0.074 0.926 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 0.157 28.253 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.070 3.930 3 H 0.076 0.924 4 N -0.381 5.381 5 C -0.363 4.363 6 H 0.098 0.902 7 C -0.274 4.274 8 N -0.625 5.625 9 Si 0.800 3.200 10 H -0.186 1.186 11 H -0.224 1.224 12 H -0.225 1.225 13 C -0.115 4.115 14 H 0.086 0.914 15 C -0.154 4.154 16 C -0.028 4.028 17 N -0.338 5.338 18 C 0.356 3.644 19 O -0.463 6.463 20 C -0.129 4.129 21 C -0.084 4.084 22 C -0.112 4.112 23 C -0.093 4.093 24 C -0.019 4.019 25 N -0.197 5.197 26 C -0.040 4.040 27 C -0.185 4.185 28 C -0.109 4.109 29 C -0.090 4.090 30 C -0.009 4.009 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.178 0.822 41 H 0.200 0.800 42 H 0.179 0.821 43 H 0.215 0.785 44 H 0.181 0.819 45 H 0.138 0.862 46 H 0.092 0.908 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.960 -0.239 28.729 28.882 hybrid contribution 0.469 -0.583 -2.947 3.040 sum -2.491 -0.822 25.782 25.916 Atomic orbital electron populations 1.22471 0.97539 1.00730 1.01337 1.20352 0.92997 0.95210 0.84420 0.92441 1.42739 1.78451 1.10241 1.06668 1.19691 1.33995 0.94255 0.88338 0.90155 1.25569 1.03376 0.96838 1.01598 1.69843 1.52946 1.10440 1.29296 0.85104 0.76584 0.78363 0.79931 1.18590 1.22409 1.22546 1.22499 0.99703 0.93076 0.96221 0.91394 1.22869 1.04067 0.97030 0.91471 1.22543 1.03795 0.81541 0.94888 1.48563 1.71151 1.05889 1.08182 1.18313 0.76119 0.81724 0.88279 1.90794 1.52231 1.40683 1.62600 1.19735 1.00654 1.00866 0.91643 1.21837 0.96844 0.96212 0.93508 1.21266 0.97889 0.97629 0.94461 1.21330 0.93153 0.93919 1.00891 1.19188 0.96330 0.96649 0.89697 1.68115 1.05192 1.06712 1.39676 1.23583 0.95421 0.95108 0.89922 1.22290 0.99385 0.99365 0.97452 1.21716 0.94083 0.94812 1.00280 1.18745 0.97385 0.98022 0.94881 1.22266 1.01079 0.96631 0.80874 0.89593 0.94567 0.94226 0.79933 0.94318 0.87347 0.87969 0.87776 0.90209 0.82213 0.80049 0.82112 0.78480 0.81919 0.86234 0.90835 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 8.85 71.98 0.64 -4.48 16 2 C 0.18 6.42 2.84 44.99 0.13 6.55 16 3 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 4 N -0.74 -36.77 5.07 -322.95 -1.64 -38.40 16 5 C -0.23 -12.65 9.93 84.03 0.83 -11.82 16 6 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 7 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 8 N -0.97 -61.25 13.06 21.65 0.28 -60.97 16 9 Si 0.97 46.61 29.55 68.60 2.03 48.63 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 13 C -0.09 -2.82 3.07 -9.41 -0.03 -2.85 16 14 H 0.07 2.24 8.14 -2.38 -0.02 2.23 16 15 C -0.12 -2.09 6.31 31.80 0.20 -1.89 16 16 C 0.09 1.63 5.68 86.74 0.49 2.12 16 17 N -0.61 -16.96 3.33 -815.41 -2.71 -19.67 16 18 C 0.57 18.12 6.81 86.70 0.59 18.71 16 19 O -0.58 -24.17 15.67 -4.01 -0.06 -24.23 16 20 C -0.13 -3.15 5.41 -19.89 -0.11 -3.26 16 21 C -0.07 -1.04 8.51 22.55 0.19 -0.85 16 22 C -0.09 -1.04 9.92 21.97 0.22 -0.82 16 23 C -0.07 -1.15 9.96 22.40 0.22 -0.93 16 24 C 0.10 2.33 6.60 40.28 0.27 2.59 16 25 N -0.49 -10.80 10.34 -188.68 -1.95 -12.75 16 26 C 0.13 2.40 11.15 85.07 0.95 3.35 16 27 C -0.17 -3.41 10.03 22.17 0.22 -3.18 16 28 C -0.08 -2.30 9.26 22.45 0.21 -2.09 16 29 C -0.09 -2.33 5.76 -21.10 -0.12 -2.46 16 30 C 0.11 3.85 5.67 86.85 0.49 4.35 16 31 H 0.09 1.94 6.07 -2.39 -0.01 1.93 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.04 1.34 6.04 -2.38 -0.01 1.33 16 34 H 0.37 20.33 7.06 -92.70 -0.65 19.67 16 35 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.10 1.54 5.74 -2.39 -0.01 1.53 16 38 H 0.10 1.13 6.07 -2.39 -0.01 1.11 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.16 1.67 6.06 -2.91 -0.02 1.65 16 41 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16 42 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 44 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.12 3.91 6.30 -2.91 -0.02 3.89 16 46 H 0.07 2.56 5.66 -2.39 -0.01 2.55 16 47 H 0.04 1.58 7.84 -2.38 -0.02 1.56 16 Total: -1.00 -80.67 375.48 2.17 -78.51 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.36 Total: 30.13 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.86 Total: -1.25 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -6.02 Total: -131.79 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.06 Total: -24.23 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -80.67 2.17 -78.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484340960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.576 kcal (2) G-P(sol) polarization free energy of solvation -80.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds