Wall clock time and date at job start Tue Mar 31 2020 23:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46429 * 2 1 4 4 N 1.46495 * 109.47328 * 120.00063 * 2 1 3 5 5 C 1.36939 * 120.00077 * 275.00019 * 4 2 1 6 6 H 1.07998 * 119.99748 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99959 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99940 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99746 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47345 * 89.99992 * 9 7 5 11 11 H 1.48507 * 109.46997 * 209.99921 * 9 7 5 12 12 H 1.48494 * 109.47400 * 329.99843 * 9 7 5 13 13 C 1.53002 * 109.47073 * 240.00311 * 2 1 3 14 14 H 1.08996 * 110.88181 * 302.42332 * 13 2 1 15 15 C 1.55159 * 111.00226 * 66.34492 * 13 2 1 16 16 C 1.54339 * 103.01391 * 153.38126 * 15 13 2 17 17 N 1.47016 * 107.26942 * 338.14082 * 16 15 13 18 18 C 1.34775 * 125.65063 * 178.84979 * 17 16 15 19 19 O 1.21589 * 120.00532 * 184.83430 * 18 17 16 20 20 C 1.47558 * 119.99743 * 4.83214 * 18 17 16 21 21 C 1.38694 * 120.38608 * 46.71058 * 20 18 17 22 22 C 1.38967 * 120.53537 * 179.97438 * 21 20 18 23 23 C 1.36208 * 121.24060 * 0.02562 * 22 21 20 24 24 C 1.40707 * 120.19925 * 359.97438 * 23 22 21 25 25 N 1.33690 * 120.94326 * 179.97438 * 24 23 22 26 26 C 1.31067 * 121.34258 * 180.02562 * 25 24 23 27 27 C 1.39341 * 121.70721 * 359.97438 * 26 25 24 28 28 C 1.36675 * 119.86842 * 0.26982 * 27 26 25 29 29 C 1.40472 * 118.16894 * 359.51784 * 28 27 26 30 30 C 1.47426 * 108.70062 * 358.58550 * 17 16 15 31 31 H 1.08996 * 109.47061 * 299.99226 * 1 2 3 32 32 H 1.08996 * 109.47451 * 59.99896 * 1 2 3 33 33 H 1.09003 * 109.47163 * 180.02562 * 1 2 3 34 34 H 0.97002 * 120.00286 * 94.99867 * 4 2 1 35 35 H 0.97004 * 119.99692 * 180.02562 * 8 7 5 36 36 H 1.08996 * 110.72282 * 271.93432 * 15 13 2 37 37 H 1.08997 * 110.72058 * 35.03969 * 15 13 2 38 38 H 1.09003 * 109.98669 * 218.66271 * 16 15 13 39 39 H 1.09004 * 109.77908 * 97.50199 * 16 15 13 40 40 H 1.08006 * 119.73273 * 359.97378 * 21 20 18 41 41 H 1.08001 * 119.38164 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.90086 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.14577 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.06522 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.91614 * 179.72854 * 28 27 26 46 46 H 1.09005 * 110.36293 * 143.19552 * 30 17 16 47 47 H 1.08999 * 110.36853 * 265.40505 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6125 -0.6617 3.5089 8 7 2.9255 -1.9388 3.4498 9 14 2.7902 0.2700 5.1182 10 1 1.5226 0.1777 5.8863 11 1 3.8953 -0.3226 5.9138 12 1 3.0940 1.6954 4.8340 13 6 2.0400 -0.7212 -1.2493 14 1 1.6547 -1.7398 -1.2944 15 6 1.6774 0.0689 -2.5345 16 6 2.7787 -0.3587 -3.5277 17 7 3.9164 -0.8463 -2.7345 18 6 5.0707 -1.3320 -3.2327 19 8 5.9115 -1.7899 -2.4832 20 6 5.3140 -1.3081 -4.6878 21 6 5.0599 -0.1598 -5.4229 22 6 5.2884 -0.1337 -6.7934 23 6 5.7648 -1.2272 -7.4511 24 6 6.0370 -2.4142 -6.7462 25 7 6.5044 -3.4964 -7.3768 26 6 6.7600 -4.6061 -6.7281 27 6 6.5590 -4.7139 -5.3535 28 6 6.0781 -3.6452 -4.6501 29 6 5.8104 -2.4570 -5.3499 30 6 3.5880 -0.7101 -1.3037 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.2491 -1.6318 1.1526 35 1 3.2489 -2.3961 4.2418 36 1 0.6920 -0.2202 -2.8998 37 1 1.7199 1.1426 -2.3519 38 1 3.0867 0.4943 -4.1323 39 1 2.4061 -1.1562 -4.1706 40 1 4.6813 0.7214 -4.9261 41 1 5.0845 0.7707 -7.3475 42 1 5.9342 -1.1830 -8.5167 43 1 7.1371 -5.4590 -7.2729 44 1 6.7781 -5.6415 -4.8456 45 1 5.9118 -3.7113 -3.5850 46 1 3.9935 -1.5503 -0.7398 47 1 3.9763 0.2305 -0.9132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484340964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:28 Heat of formation + Delta-G solvation = 15.875024 kcal Electronic energy + Delta-G solvation = -28845.912041 eV Core-core repulsion = 24992.832663 eV Total energy + Delta-G solvation = -3853.079379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.18017 -40.94086 -39.12540 -37.94720 -36.81384 -34.53272 -34.27605 -32.29066 -31.63480 -31.22320 -30.04318 -29.46283 -26.11456 -25.83286 -24.99452 -24.57580 -23.29478 -22.88344 -21.09488 -20.56300 -19.50115 -19.04339 -18.36757 -18.09888 -17.53265 -17.21057 -16.60935 -16.39710 -15.79583 -15.66239 -15.44747 -15.38509 -15.19732 -15.01427 -14.65301 -14.29091 -14.23215 -13.97718 -13.90552 -13.59925 -13.39524 -13.10510 -13.02476 -12.87779 -12.77397 -12.69311 -12.38530 -12.35367 -12.20602 -12.04223 -11.69922 -11.65277 -11.53611 -11.38969 -11.29373 -10.93741 -10.53403 -9.85867 -9.78890 -9.33902 -8.98909 -7.92595 -5.20092 -0.87268 -0.24412 0.63641 1.45703 1.47276 1.50130 1.55213 1.77326 1.99425 2.56303 3.01648 3.22053 3.28422 3.41633 3.55577 3.65047 3.71744 3.75236 3.78966 3.87405 3.95126 4.09644 4.16271 4.28520 4.36848 4.40459 4.44100 4.54901 4.63676 4.68073 4.71028 4.73976 4.86841 4.87077 4.96398 4.98465 5.05152 5.09647 5.11020 5.19886 5.24525 5.28391 5.33822 5.41044 5.48022 5.53990 5.65648 5.75289 6.29565 6.37992 6.80105 6.91776 7.35315 8.13431 8.33986 9.31154 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016896 B = 0.002580 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.792527 B =10848.135827 C =11755.673884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.050 0.950 4 N -0.739 5.739 5 C -0.229 4.229 6 H 0.078 0.922 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.287 1.287 11 H -0.302 1.302 12 H -0.268 1.268 13 C -0.093 4.093 14 H 0.072 0.928 15 C -0.111 4.111 16 C 0.093 3.907 17 N -0.608 5.608 18 C 0.565 3.435 19 O -0.583 6.583 20 C -0.125 4.125 21 C -0.064 4.064 22 C -0.094 4.094 23 C -0.073 4.073 24 C 0.102 3.898 25 N -0.489 5.489 26 C 0.132 3.868 27 C -0.165 4.165 28 C -0.082 4.082 29 C -0.087 4.087 30 C 0.125 3.875 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.158 0.842 41 H 0.182 0.818 42 H 0.162 0.838 43 H 0.199 0.801 44 H 0.164 0.836 45 H 0.121 0.879 46 H 0.037 0.963 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 3.065 -28.499 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 H 0.068 0.932 4 N -0.379 5.379 5 C -0.361 4.361 6 H 0.096 0.904 7 C -0.272 4.272 8 N -0.624 5.624 9 Si 0.797 3.203 10 H -0.214 1.214 11 H -0.229 1.229 12 H -0.193 1.193 13 C -0.113 4.113 14 H 0.091 0.909 15 C -0.149 4.149 16 C -0.028 4.028 17 N -0.340 5.340 18 C 0.355 3.645 19 O -0.464 6.464 20 C -0.129 4.129 21 C -0.083 4.083 22 C -0.113 4.113 23 C -0.091 4.091 24 C -0.019 4.019 25 N -0.197 5.197 26 C -0.040 4.040 27 C -0.184 4.184 28 C -0.108 4.108 29 C -0.090 4.090 30 C 0.002 3.998 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.200 0.800 35 H 0.056 0.944 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.175 0.825 41 H 0.199 0.801 42 H 0.179 0.821 43 H 0.215 0.785 44 H 0.181 0.819 45 H 0.139 0.861 46 H 0.056 0.944 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.117 3.138 -28.945 29.136 hybrid contribution 0.428 -0.662 2.960 3.063 sum 1.544 2.476 -25.985 26.148 Atomic orbital electron populations 1.22275 0.96944 1.00837 1.01221 1.20432 0.93190 0.94839 0.84428 0.93181 1.42677 1.78463 1.10239 1.06476 1.19602 1.34140 0.94158 0.88220 0.90404 1.25522 1.03421 0.96836 1.01457 1.69829 1.53026 1.10338 1.29171 0.85218 0.76716 0.78144 0.80204 1.21442 1.22877 1.19298 1.22488 0.92160 1.00465 0.96191 0.90938 1.22735 0.99112 1.01278 0.91766 1.22526 0.85197 1.00495 0.94566 1.48579 1.15605 1.61481 1.08315 1.18343 0.80740 0.77009 0.88388 1.90792 1.46224 1.47901 1.61502 1.19730 1.05339 0.96441 0.91384 1.21795 0.95185 0.96470 0.94828 1.21253 0.97137 0.99844 0.93074 1.21330 0.96218 0.89963 1.01627 1.19182 0.98618 0.94985 0.89088 1.68122 1.12349 0.99864 1.39367 1.23591 0.92841 0.95911 0.91679 1.22294 0.99734 1.00250 0.96170 1.21739 0.95608 0.92951 1.00538 1.18755 1.00933 0.94373 0.94924 1.22026 0.96650 1.00421 0.80699 0.94711 0.89880 0.94241 0.79993 0.94367 0.87031 0.88617 0.87946 0.90254 0.82481 0.80110 0.82063 0.78457 0.81858 0.86110 0.94396 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 9.34 71.98 0.67 -4.08 16 2 C 0.18 6.41 2.41 44.99 0.11 6.52 16 3 H 0.05 1.79 8.05 -2.39 -0.02 1.77 16 4 N -0.74 -36.39 4.82 -322.94 -1.56 -37.94 16 5 C -0.23 -12.58 9.93 84.03 0.83 -11.74 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 7 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 8 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 9 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 13 C -0.09 -2.74 2.63 -9.40 -0.02 -2.76 16 14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.11 -1.98 5.59 31.79 0.18 -1.80 16 16 C 0.09 1.67 5.95 86.74 0.52 2.19 16 17 N -0.61 -17.47 3.33 -815.50 -2.71 -20.18 16 18 C 0.57 18.54 6.86 86.70 0.59 19.13 16 19 O -0.58 -24.87 15.45 -4.00 -0.06 -24.93 16 20 C -0.13 -3.19 5.37 -19.89 -0.11 -3.30 16 21 C -0.06 -1.06 8.42 22.55 0.19 -0.87 16 22 C -0.09 -1.08 9.92 21.97 0.22 -0.86 16 23 C -0.07 -1.13 9.96 22.40 0.22 -0.91 16 24 C 0.10 2.31 6.60 40.27 0.27 2.58 16 25 N -0.49 -10.67 10.34 -188.68 -1.95 -12.62 16 26 C 0.13 2.35 11.15 85.07 0.95 3.30 16 27 C -0.17 -3.32 10.03 22.17 0.22 -3.10 16 28 C -0.08 -2.26 9.24 22.45 0.21 -2.05 16 29 C -0.09 -2.32 5.76 -21.10 -0.12 -2.44 16 30 C 0.12 4.38 6.11 86.85 0.53 4.91 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.84 7.50 -2.39 -0.02 1.82 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.37 20.14 7.80 -92.71 -0.72 19.42 16 35 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.11 1.44 8.13 -2.39 -0.02 1.42 16 37 H 0.10 1.48 8.01 -2.39 -0.02 1.46 16 38 H 0.10 1.19 5.87 -2.39 -0.01 1.18 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.16 1.84 6.33 -2.91 -0.02 1.82 16 41 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 42 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.20 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.12 3.93 6.22 -2.91 -0.02 3.91 16 46 H 0.04 1.67 7.99 -2.38 -0.02 1.65 16 47 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 Total: -1.00 -80.54 383.51 2.22 -78.32 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.27 Total: 28.70 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.92 Total: 0.49 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -5.94 Total: -131.57 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.06 Total: -24.93 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -80.54 2.22 -78.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484340964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.196 kcal (2) G-P(sol) polarization free energy of solvation -80.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds