Wall clock time and date at job start Tue Mar 31 2020 23:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47501 * 2 1 4 4 N 1.46505 * 109.47200 * 120.00199 * 2 1 3 5 5 C 1.36933 * 119.99746 * 275.00308 * 4 2 1 6 6 H 1.08000 * 120.00145 * 0.26499 * 5 4 2 7 7 C 1.38816 * 119.99856 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99752 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99948 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47280 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47544 * 119.99382 * 9 7 5 12 12 H 1.48503 * 109.47151 * 239.99603 * 9 7 5 13 13 C 1.53001 * 109.46954 * 239.99677 * 2 1 3 14 14 H 1.08998 * 110.88921 * 302.42901 * 13 2 1 15 15 C 1.55156 * 111.00262 * 66.35599 * 13 2 1 16 16 C 1.54319 * 102.94507 * 153.57358 * 15 13 2 17 17 N 1.47023 * 107.27154 * 337.80572 * 16 15 13 18 18 C 1.34778 * 125.65080 * 178.90456 * 17 16 15 19 19 O 1.21582 * 120.00214 * 175.17889 * 18 17 16 20 20 C 1.47568 * 119.99979 * 355.17753 * 18 17 16 21 21 C 1.38709 * 120.43252 * 48.57279 * 20 18 17 22 22 C 1.38996 * 120.75205 * 179.71641 * 21 20 18 23 23 C 1.36349 * 121.18944 * 0.59219 * 22 21 20 24 24 C 1.40353 * 119.92672 * 359.70101 * 23 22 21 25 25 C 1.40682 * 122.10189 * 179.97438 * 24 23 22 26 26 C 1.36261 * 118.66914 * 180.02562 * 25 24 23 27 27 N 1.32503 * 121.84033 * 0.02562 * 26 25 24 28 28 C 1.31321 * 122.72226 * 359.95752 * 27 26 25 29 29 C 1.40137 * 119.91376 * 0.04302 * 28 27 26 30 30 C 1.47428 * 108.69956 * 358.94098 * 17 16 15 31 31 H 1.08999 * 109.47501 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47185 * 300.00080 * 1 2 3 33 33 H 1.08999 * 109.47268 * 59.99846 * 1 2 3 34 34 H 0.97001 * 119.99902 * 94.99738 * 4 2 1 35 35 H 0.96998 * 119.99835 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.72127 * 271.93845 * 15 13 2 37 37 H 1.08997 * 110.72423 * 35.20553 * 15 13 2 38 38 H 1.09000 * 109.88560 * 218.38802 * 16 15 13 39 39 H 1.09008 * 109.88343 * 97.22021 * 16 15 13 40 40 H 1.08002 * 119.62549 * 0.02562 * 21 20 18 41 41 H 1.08003 * 119.40725 * 180.29219 * 22 21 20 42 42 H 1.08003 * 120.03481 * 179.66841 * 23 22 21 43 43 H 1.08007 * 120.66678 * 0.02562 * 25 24 23 44 44 H 1.07997 * 119.07922 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.04272 * 180.02562 * 28 27 26 46 46 H 1.09005 * 110.36226 * 265.28764 * 30 17 16 47 47 H 1.09001 * 110.45370 * 143.01767 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8880 1.0393 2.4253 7 6 2.6123 -0.6618 3.5090 8 7 2.9253 -1.9389 3.4498 9 14 2.7912 0.2702 5.1179 10 1 2.3772 1.6826 4.9205 11 1 1.9310 -0.3582 6.1524 12 1 4.2084 0.2273 5.5598 13 6 2.0399 -0.7213 -1.2492 14 1 1.6546 -1.7399 -1.2944 15 6 1.6775 0.0688 -2.5345 16 6 2.7765 -0.3640 -3.5277 17 7 3.9164 -0.8466 -2.7344 18 6 5.0701 -1.3336 -3.2326 19 8 5.9818 -1.6237 -2.4823 20 6 5.2268 -1.5149 -4.6887 21 6 4.8898 -0.4931 -5.5641 22 6 5.0402 -0.6545 -6.9365 23 6 5.5101 -1.8211 -7.4629 24 6 5.8573 -2.8830 -6.6134 25 6 6.3460 -4.1064 -7.1071 26 6 6.6611 -5.0906 -6.2190 27 7 6.5191 -4.9246 -4.9121 28 6 6.0694 -3.8101 -4.3828 29 6 5.7168 -2.7358 -5.2106 30 6 3.5880 -0.7104 -1.3036 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6318 1.1526 35 1 3.2487 -2.3961 4.2418 36 1 0.6921 -0.2201 -2.8998 37 1 1.7230 1.1425 -2.3528 38 1 3.0823 0.4870 -4.1362 39 1 2.4042 -1.1647 -4.1668 40 1 4.5110 0.4404 -5.1748 41 1 4.7756 0.1572 -7.5981 42 1 5.6146 -1.9282 -8.5326 43 1 6.4688 -4.2624 -8.1687 44 1 7.0372 -6.0323 -6.5907 45 1 5.9712 -3.7217 -3.3109 46 1 3.9747 0.2312 -0.9137 47 1 3.9934 -1.5494 -0.7381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484354125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:58 Heat of formation + Delta-G solvation = 36.930994 kcal Electronic energy + Delta-G solvation = -28860.886605 eV Core-core repulsion = 25008.720282 eV Total energy + Delta-G solvation = -3852.166323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.32621 -39.86189 -37.91031 -37.37731 -35.23797 -33.31648 -32.46484 -31.53335 -30.73935 -30.00829 -28.59371 -28.11086 -25.15205 -24.15010 -23.93204 -23.73384 -22.41997 -21.53896 -19.68501 -19.61712 -18.42391 -17.66231 -17.13462 -17.00443 -16.58148 -15.92781 -15.66540 -15.02857 -14.76716 -14.55210 -14.40609 -14.20717 -14.06487 -13.69593 -13.64490 -13.28231 -12.94988 -12.79558 -12.65306 -12.36193 -12.30195 -12.19324 -11.99666 -11.80326 -11.63113 -11.35293 -10.90087 -10.78436 -10.60848 -10.58911 -10.46835 -10.20453 -9.96735 -9.85180 -9.66233 -9.62342 -9.46035 -8.91249 -8.61580 -8.36865 -6.95767 -5.74759 -3.04032 -0.11414 0.57508 1.41093 2.48899 2.76086 3.00195 3.44930 3.50135 3.52829 3.79026 4.09998 4.21718 4.33358 4.41542 4.47690 4.57704 4.62617 4.63238 4.75436 4.85544 4.92480 4.98914 5.25551 5.30345 5.35310 5.41140 5.42088 5.55518 5.61301 5.63003 5.71439 5.85882 5.86216 5.86508 5.90047 5.99159 6.02455 6.14330 6.25483 6.27530 6.35632 6.37138 6.43897 6.53972 6.61010 6.83188 7.05623 7.48436 7.71710 7.77034 8.06577 8.43052 9.54630 10.10958 10.45281 11.47722 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016235 B = 0.002636 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.286682 B =10618.681057 C =11640.451309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.125 4.125 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.567 3.433 19 O -0.523 6.523 20 C -0.081 4.081 21 C -0.090 4.090 22 C -0.101 4.101 23 C -0.097 4.097 24 C -0.025 4.025 25 C -0.161 4.161 26 C 0.080 3.920 27 N -0.485 5.485 28 C 0.159 3.841 29 C -0.082 4.082 30 C 0.120 3.880 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.154 0.846 45 H 0.172 0.828 46 H 0.075 0.925 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 1.594 -27.384 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.163 4.163 16 C -0.026 4.026 17 N -0.342 5.342 18 C 0.355 3.645 19 O -0.400 6.400 20 C -0.086 4.086 21 C -0.108 4.108 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.031 4.031 25 C -0.181 4.181 26 C -0.064 4.064 27 N -0.193 5.193 28 C -0.012 4.012 29 C -0.085 4.085 30 C -0.001 4.001 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.172 0.828 45 H 0.189 0.811 46 H 0.093 0.907 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.849 0.747 -26.419 26.494 hybrid contribution -0.114 0.886 0.280 0.936 sum 1.736 1.633 -26.139 26.248 Atomic orbital electron populations 1.22440 0.99082 1.00901 0.99983 1.20152 0.91915 0.95139 0.85323 0.93281 1.42427 1.78157 1.10732 1.05275 1.19227 1.36584 0.93888 0.87267 0.91194 1.24733 1.02125 0.95939 0.98028 1.69663 1.50731 1.08621 1.28799 0.86162 0.77335 0.78760 0.84184 1.20621 1.21955 1.21881 1.22687 0.93950 1.00388 0.95188 0.90022 1.22695 0.97637 1.01124 0.94836 1.22235 0.86837 0.98758 0.94793 1.48536 1.14817 1.61680 1.09182 1.17745 0.81800 0.77849 0.87108 1.90863 1.38937 1.50597 1.59617 1.19918 1.00808 0.94548 0.93374 1.21486 0.97615 0.98655 0.93074 1.20907 0.98370 0.97851 0.94844 1.21109 0.98206 0.92499 0.99685 1.18112 0.97786 0.94982 0.92187 1.21893 1.01553 0.93353 1.01303 1.22307 0.96469 0.99096 0.88508 1.67561 1.12809 1.24527 1.14427 1.23537 0.90096 0.86633 1.00893 1.18751 1.01032 0.95001 0.93672 1.22329 0.95228 1.03460 0.79088 0.93507 0.92743 0.94425 0.78246 0.93537 0.89952 0.90213 0.91411 0.91434 0.84594 0.84802 0.84735 0.84281 0.82846 0.81116 0.90684 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.34 37.15 0.35 -2.35 16 2 C 0.19 3.35 2.40 -67.93 -0.16 3.18 16 3 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 4 N -0.72 -17.29 4.82 -53.43 -0.26 -17.55 16 5 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 9 Si 0.90 22.39 29.55 -169.99 -5.02 17.37 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 C -0.10 -1.51 2.62 -88.47 -0.23 -1.74 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -1.32 5.59 -24.90 -0.14 -1.46 16 16 C 0.10 0.98 5.68 -3.07 -0.02 0.96 16 17 N -0.61 -8.51 3.33 -171.73 -0.57 -9.08 16 18 C 0.57 8.68 6.83 -12.45 -0.09 8.60 16 19 O -0.52 -10.05 15.71 5.29 0.08 -9.97 16 20 C -0.08 -1.01 5.42 -104.66 -0.57 -1.58 16 21 C -0.09 -0.81 8.51 -39.13 -0.33 -1.15 16 22 C -0.10 -0.71 9.93 -39.98 -0.40 -1.10 16 23 C -0.10 -0.72 9.79 -39.47 -0.39 -1.11 16 24 C -0.03 -0.26 5.74 -106.84 -0.61 -0.87 16 25 C -0.16 -1.42 9.88 -39.37 -0.39 -1.81 16 26 C 0.08 0.82 11.07 -17.97 -0.20 0.62 16 27 N -0.49 -6.66 10.30 -13.22 -0.14 -6.80 16 28 C 0.16 2.27 10.46 -17.06 -0.18 2.09 16 29 C -0.08 -1.04 5.76 -106.59 -0.61 -1.66 16 30 C 0.12 1.98 6.07 -2.53 -0.02 1.97 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.49 7.50 -51.93 -0.39 0.10 16 34 H 0.38 9.90 7.80 -40.82 -0.32 9.58 16 35 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 37 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 38 H 0.07 0.53 6.07 -51.93 -0.31 0.22 16 39 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.14 1.01 6.04 -52.49 -0.32 0.69 16 41 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 42 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 43 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 44 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.17 2.66 6.31 -52.49 -0.33 2.33 16 46 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 47 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -33.64 383.57 -10.32 -43.96 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.69 Total: 8.01 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -4.23 Total: -4.42 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.24 Total: -60.73 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.64 -10.32 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484354125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.889 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds