Wall clock time and date at job start Tue Mar 31 2020 23:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47501 * 2 1 4 4 N 1.46505 * 109.47200 * 120.00199 * 2 1 3 5 5 C 1.36933 * 119.99746 * 275.00308 * 4 2 1 6 6 H 1.08000 * 120.00145 * 0.26499 * 5 4 2 7 7 C 1.38816 * 119.99856 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99752 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99948 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47280 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47544 * 119.99382 * 9 7 5 12 12 H 1.48503 * 109.47151 * 239.99603 * 9 7 5 13 13 C 1.53001 * 109.46954 * 239.99677 * 2 1 3 14 14 H 1.08998 * 110.88921 * 302.42901 * 13 2 1 15 15 C 1.55156 * 111.00262 * 66.35599 * 13 2 1 16 16 C 1.54319 * 102.94507 * 153.57358 * 15 13 2 17 17 N 1.47023 * 107.27154 * 337.80572 * 16 15 13 18 18 C 1.34778 * 125.65080 * 178.90456 * 17 16 15 19 19 O 1.21582 * 120.00214 * 175.17889 * 18 17 16 20 20 C 1.47568 * 119.99979 * 355.17753 * 18 17 16 21 21 C 1.38709 * 120.43252 * 48.57279 * 20 18 17 22 22 C 1.38996 * 120.75205 * 179.71641 * 21 20 18 23 23 C 1.36349 * 121.18944 * 0.59219 * 22 21 20 24 24 C 1.40353 * 119.92672 * 359.70101 * 23 22 21 25 25 C 1.40682 * 122.10189 * 179.97438 * 24 23 22 26 26 C 1.36261 * 118.66914 * 180.02562 * 25 24 23 27 27 N 1.32503 * 121.84033 * 0.02562 * 26 25 24 28 28 C 1.31321 * 122.72226 * 359.95752 * 27 26 25 29 29 C 1.40137 * 119.91376 * 0.04302 * 28 27 26 30 30 C 1.47428 * 108.69956 * 358.94098 * 17 16 15 31 31 H 1.08999 * 109.47501 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47185 * 300.00080 * 1 2 3 33 33 H 1.08999 * 109.47268 * 59.99846 * 1 2 3 34 34 H 0.97001 * 119.99902 * 94.99738 * 4 2 1 35 35 H 0.96998 * 119.99835 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.72127 * 271.93845 * 15 13 2 37 37 H 1.08997 * 110.72423 * 35.20553 * 15 13 2 38 38 H 1.09000 * 109.88560 * 218.38802 * 16 15 13 39 39 H 1.09008 * 109.88343 * 97.22021 * 16 15 13 40 40 H 1.08002 * 119.62549 * 0.02562 * 21 20 18 41 41 H 1.08003 * 119.40725 * 180.29219 * 22 21 20 42 42 H 1.08003 * 120.03481 * 179.66841 * 23 22 21 43 43 H 1.08007 * 120.66678 * 0.02562 * 25 24 23 44 44 H 1.07997 * 119.07922 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.04272 * 180.02562 * 28 27 26 46 46 H 1.09005 * 110.36226 * 265.28764 * 30 17 16 47 47 H 1.09001 * 110.45370 * 143.01767 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8880 1.0393 2.4253 7 6 2.6123 -0.6618 3.5090 8 7 2.9253 -1.9389 3.4498 9 14 2.7912 0.2702 5.1179 10 1 2.3772 1.6826 4.9205 11 1 1.9310 -0.3582 6.1524 12 1 4.2084 0.2273 5.5598 13 6 2.0399 -0.7213 -1.2492 14 1 1.6546 -1.7399 -1.2944 15 6 1.6775 0.0688 -2.5345 16 6 2.7765 -0.3640 -3.5277 17 7 3.9164 -0.8466 -2.7344 18 6 5.0701 -1.3336 -3.2326 19 8 5.9818 -1.6237 -2.4823 20 6 5.2268 -1.5149 -4.6887 21 6 4.8898 -0.4931 -5.5641 22 6 5.0402 -0.6545 -6.9365 23 6 5.5101 -1.8211 -7.4629 24 6 5.8573 -2.8830 -6.6134 25 6 6.3460 -4.1064 -7.1071 26 6 6.6611 -5.0906 -6.2190 27 7 6.5191 -4.9246 -4.9121 28 6 6.0694 -3.8101 -4.3828 29 6 5.7168 -2.7358 -5.2106 30 6 3.5880 -0.7104 -1.3036 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6318 1.1526 35 1 3.2487 -2.3961 4.2418 36 1 0.6921 -0.2201 -2.8998 37 1 1.7230 1.1425 -2.3528 38 1 3.0823 0.4870 -4.1362 39 1 2.4042 -1.1647 -4.1668 40 1 4.5110 0.4404 -5.1748 41 1 4.7756 0.1572 -7.5981 42 1 5.6146 -1.9282 -8.5326 43 1 6.4688 -4.2624 -8.1687 44 1 7.0372 -6.0323 -6.5907 45 1 5.9712 -3.7217 -3.3109 46 1 3.9747 0.2312 -0.9137 47 1 3.9934 -1.5494 -0.7381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484354125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:57 Heat of formation + Delta-G solvation = 14.775490 kcal Electronic energy + Delta-G solvation = -28861.847340 eV Core-core repulsion = 25008.720282 eV Total energy + Delta-G solvation = -3853.127058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.18022 -40.93067 -39.12032 -38.20730 -36.81555 -34.42916 -33.95838 -32.27643 -32.13077 -30.91377 -30.03817 -29.42839 -26.13189 -25.83541 -24.96444 -24.58001 -23.34541 -22.87336 -21.08862 -20.61401 -19.35356 -19.00097 -18.44172 -17.98794 -17.55050 -17.14716 -16.71749 -16.44695 -15.74737 -15.65128 -15.44300 -15.30648 -15.23196 -15.06009 -14.74927 -14.45957 -14.16443 -13.99662 -13.78335 -13.58586 -13.31869 -13.12351 -13.09245 -12.96390 -12.88755 -12.69507 -12.50782 -12.35967 -12.14436 -12.04306 -11.68580 -11.53139 -11.42022 -11.25583 -11.05745 -10.94712 -10.53389 -10.19872 -9.77554 -9.11262 -8.98834 -7.92567 -5.20108 -0.87983 -0.15362 0.58192 1.45278 1.46621 1.49652 1.55900 1.82435 2.06902 2.56291 2.99239 3.22992 3.40723 3.41703 3.52843 3.63973 3.70654 3.73710 3.78234 3.87844 3.92355 4.14016 4.16763 4.30652 4.37880 4.42743 4.52883 4.58410 4.62491 4.64492 4.68495 4.76754 4.83304 4.86941 4.87417 4.96964 5.01959 5.10461 5.11655 5.21420 5.22356 5.32748 5.34750 5.41489 5.54239 5.59609 5.66138 5.76771 6.29623 6.39058 6.89957 6.95393 7.35245 8.13494 8.33909 9.31398 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016235 B = 0.002636 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.286682 B =10618.681057 C =11640.451309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.050 0.950 4 N -0.739 5.739 5 C -0.228 4.228 6 H 0.079 0.921 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.262 1.262 11 H -0.295 1.295 12 H -0.300 1.300 13 C -0.093 4.093 14 H 0.073 0.927 15 C -0.111 4.111 16 C 0.093 3.907 17 N -0.608 5.608 18 C 0.562 3.438 19 O -0.584 6.584 20 C -0.120 4.120 21 C -0.065 4.065 22 C -0.098 4.098 23 C -0.076 4.076 24 C -0.045 4.045 25 C -0.132 4.132 26 C 0.050 3.950 27 N -0.512 5.512 28 C 0.118 3.882 29 C -0.093 4.093 30 C 0.125 3.875 31 H 0.039 0.961 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.369 0.631 35 H 0.247 0.753 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.156 0.844 41 H 0.180 0.820 42 H 0.179 0.821 43 H 0.187 0.813 44 H 0.181 0.819 45 H 0.133 0.867 46 H 0.058 0.942 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 4.398 -33.058 33.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 H 0.068 0.932 4 N -0.379 5.379 5 C -0.360 4.360 6 H 0.096 0.904 7 C -0.273 4.273 8 N -0.624 5.624 9 Si 0.797 3.203 10 H -0.186 1.186 11 H -0.223 1.223 12 H -0.228 1.228 13 C -0.114 4.114 14 H 0.091 0.909 15 C -0.149 4.149 16 C -0.028 4.028 17 N -0.340 5.340 18 C 0.352 3.648 19 O -0.465 6.465 20 C -0.125 4.125 21 C -0.083 4.083 22 C -0.117 4.117 23 C -0.093 4.093 24 C -0.051 4.051 25 C -0.151 4.151 26 C -0.093 4.093 27 N -0.221 5.221 28 C -0.052 4.052 29 C -0.096 4.096 30 C 0.002 3.998 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.200 0.800 35 H 0.056 0.944 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.174 0.826 41 H 0.197 0.803 42 H 0.196 0.804 43 H 0.204 0.796 44 H 0.198 0.802 45 H 0.151 0.849 46 H 0.076 0.924 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.005 3.617 -32.147 32.350 hybrid contribution 0.446 0.050 1.838 1.892 sum 0.450 3.667 -30.309 30.533 Atomic orbital electron populations 1.22270 0.96865 1.00852 1.01242 1.20440 0.93240 0.94817 0.84426 0.93223 1.42695 1.78455 1.10237 1.06519 1.19639 1.33952 0.94193 0.88183 0.90354 1.25533 1.03486 0.96825 1.01499 1.69835 1.53089 1.10347 1.29129 0.85147 0.76465 0.78440 0.80222 1.18617 1.22266 1.22790 1.22502 0.92046 1.00523 0.96280 0.90885 1.22742 0.99250 1.01182 0.91721 1.22559 0.85130 1.00489 0.94606 1.48597 1.15684 1.61389 1.08299 1.18417 0.81168 0.76596 0.88610 1.90812 1.41169 1.52995 1.61522 1.19648 1.05176 0.96268 0.91419 1.21845 0.94814 0.97758 0.93890 1.21393 0.97279 0.99019 0.93990 1.21644 0.95266 0.91084 1.01342 1.18515 0.98586 0.96830 0.91123 1.22400 0.97841 0.91737 1.03149 1.22816 0.97865 1.01159 0.87489 1.67414 1.13081 1.24708 1.16893 1.23074 0.93768 0.88539 0.99847 1.18830 1.01227 0.94454 0.95116 1.22017 0.96658 1.00356 0.80759 0.94223 0.94720 0.89816 0.80014 0.94386 0.86880 0.88695 0.87887 0.89861 0.82632 0.80274 0.80354 0.79594 0.80243 0.84919 0.92400 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.34 71.98 0.67 -4.10 16 2 C 0.18 6.48 2.40 44.99 0.11 6.59 16 3 H 0.05 1.80 8.05 -2.39 -0.02 1.78 16 4 N -0.74 -36.88 4.82 -322.94 -1.56 -38.44 16 5 C -0.23 -12.63 9.93 84.04 0.83 -11.79 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 7 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 8 N -0.97 -61.92 13.06 21.65 0.28 -61.64 16 9 Si 0.97 47.55 29.55 68.60 2.03 49.57 16 10 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 13 C -0.09 -2.78 2.62 -9.40 -0.02 -2.81 16 14 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.11 -1.97 5.59 31.78 0.18 -1.79 16 16 C 0.09 1.62 5.68 86.73 0.49 2.11 16 17 N -0.61 -17.65 3.33 -815.49 -2.71 -20.36 16 18 C 0.56 18.67 6.83 86.70 0.59 19.26 16 19 O -0.58 -25.59 15.71 -3.97 -0.06 -25.66 16 20 C -0.12 -2.99 5.42 -19.89 -0.11 -3.09 16 21 C -0.06 -0.94 8.51 22.56 0.19 -0.75 16 22 C -0.10 -0.78 9.93 22.01 0.22 -0.56 16 23 C -0.08 -0.69 9.79 22.34 0.22 -0.47 16 24 C -0.05 -0.80 5.74 -21.30 -0.12 -0.92 16 25 C -0.13 -1.90 9.88 22.41 0.22 -1.68 16 26 C 0.05 1.01 11.07 84.13 0.93 1.94 16 27 N -0.51 -15.32 10.30 -195.73 -2.02 -17.34 16 28 C 0.12 3.80 10.46 85.23 0.89 4.69 16 29 C -0.09 -2.45 5.76 -21.14 -0.12 -2.58 16 30 C 0.12 4.48 6.07 86.85 0.53 5.00 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.86 7.50 -2.39 -0.02 1.84 16 34 H 0.37 20.41 7.80 -92.71 -0.72 19.69 16 35 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.11 1.41 8.13 -2.39 -0.02 1.40 16 37 H 0.09 1.47 8.01 -2.39 -0.02 1.45 16 38 H 0.10 1.12 6.07 -2.39 -0.01 1.10 16 39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.16 1.56 6.04 -2.91 -0.02 1.54 16 41 H 0.18 -0.06 8.06 -2.91 -0.02 -0.09 16 42 H 0.18 0.12 8.06 -2.91 -0.02 0.10 16 43 H 0.19 0.86 8.06 -2.91 -0.02 0.83 16 44 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 45 H 0.13 5.09 6.31 -2.91 -0.02 5.07 16 46 H 0.06 2.22 8.04 -2.38 -0.02 2.20 16 47 H 0.04 1.63 8.09 -2.39 -0.02 1.61 16 Total: -1.00 -85.24 383.57 2.40 -82.84 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.27 Total: 26.30 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 6.17 Total: 4.72 kcal Atomic # 7 Polarization: -131.78 SS G_CDS: -6.00 Total: -137.78 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -85.24 2.40 -82.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484354125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.615 kcal (2) G-P(sol) polarization free energy of solvation -85.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds