Wall clock time and date at job start Tue Mar 31 2020 23:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47047 * 2 1 4 4 N 1.46505 * 109.46921 * 120.00015 * 2 1 3 5 5 C 1.36932 * 119.99676 * 275.00174 * 4 2 1 6 6 H 1.08000 * 120.00585 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99914 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00035 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00255 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47238 * 59.99783 * 9 7 5 11 11 H 1.48504 * 109.47275 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46828 * 299.99908 * 9 7 5 13 13 C 1.53001 * 109.47347 * 239.99620 * 2 1 3 14 14 H 1.08996 * 110.88671 * 299.89466 * 13 2 1 15 15 C 1.55154 * 111.00598 * 175.96552 * 13 2 1 16 16 C 1.54315 * 102.94441 * 206.42763 * 15 13 2 17 17 N 1.47019 * 107.27413 * 22.19491 * 16 15 13 18 18 C 1.34778 * 125.65187 * 181.09625 * 17 16 15 19 19 O 1.21582 * 119.99778 * 184.82811 * 18 17 16 20 20 C 1.47565 * 119.99726 * 4.82663 * 18 17 16 21 21 C 1.38705 * 120.43319 * 311.26528 * 20 18 17 22 22 C 1.39007 * 120.74834 * 179.77056 * 21 20 18 23 23 C 1.36342 * 121.18983 * 0.51781 * 22 21 20 24 24 C 1.40356 * 119.93110 * 359.74508 * 23 22 21 25 25 C 1.40681 * 122.09920 * 180.02562 * 24 23 22 26 26 C 1.36262 * 118.66309 * 179.97438 * 25 24 23 27 27 N 1.32509 * 121.84248 * 0.02562 * 26 25 24 28 28 C 1.31318 * 122.72062 * 359.95037 * 27 26 25 29 29 C 1.40140 * 119.91534 * 0.04662 * 28 27 26 30 30 C 1.47425 * 108.70095 * 1.06178 * 17 16 15 31 31 H 1.09000 * 109.46960 * 174.88348 * 1 2 3 32 32 H 1.09001 * 109.46972 * 54.88663 * 1 2 3 33 33 H 1.08998 * 109.47574 * 294.89056 * 1 2 3 34 34 H 0.96995 * 119.99628 * 94.99430 * 4 2 1 35 35 H 0.97001 * 120.00416 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.72051 * 324.79542 * 15 13 2 37 37 H 1.08999 * 110.71542 * 88.05988 * 15 13 2 38 38 H 1.09001 * 109.88447 * 262.77473 * 16 15 13 39 39 H 1.09001 * 110.01135 * 141.68600 * 16 15 13 40 40 H 1.07993 * 119.62637 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.39880 * 180.24581 * 22 21 20 42 42 H 1.08007 * 120.03131 * 179.76563 * 23 22 21 43 43 H 1.07999 * 120.67162 * 359.95536 * 25 24 23 44 44 H 1.08002 * 119.07862 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.03967 * 180.02562 * 28 27 26 46 46 H 1.09007 * 110.36648 * 217.03694 * 30 17 16 47 47 H 1.08991 * 110.46585 * 94.75867 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3757 6 1 1.8925 1.0405 2.4242 7 6 2.6122 -0.6617 3.5090 8 7 2.9252 -1.9387 3.4500 9 14 2.7898 0.2700 5.1184 10 1 1.4671 0.8057 5.5288 11 1 3.2989 -0.6484 6.1685 12 1 3.7442 1.3932 4.9373 13 6 2.0401 -0.7213 -1.2492 14 1 1.6911 -1.7537 -1.2715 15 6 3.5877 -0.6544 -1.3371 16 6 3.8532 -0.7716 -2.8527 17 7 2.6239 -0.3571 -3.5446 18 6 2.4423 -0.3385 -4.8799 19 8 1.4119 0.1069 -5.3471 20 6 3.4939 -0.8588 -5.7749 21 6 4.8131 -0.4618 -5.6139 22 6 5.8098 -0.9514 -6.4502 23 6 5.5211 -1.8248 -7.4566 24 6 4.1983 -2.2485 -7.6582 25 6 3.8493 -3.1484 -8.6817 26 6 2.5431 -3.5132 -8.8139 27 7 1.6013 -3.0441 -8.0085 28 6 1.8558 -2.2025 -7.0331 29 6 3.1687 -1.7647 -6.8126 30 6 1.6226 0.0340 -2.5357 31 1 -0.3633 -1.0236 -0.0916 32 1 -0.3633 0.5911 -0.8407 33 1 -0.3634 0.4325 0.9322 34 1 2.2489 -1.6318 1.1526 35 1 3.2485 -2.3960 4.2420 36 1 3.9549 0.2975 -0.9537 37 1 4.0407 -1.4881 -0.8006 38 1 4.0925 -1.8038 -3.1085 39 1 4.6777 -0.1184 -3.1386 40 1 5.0696 0.2324 -4.8274 41 1 6.8305 -0.6307 -6.3028 42 1 6.3096 -2.1904 -8.0977 43 1 4.6014 -3.5419 -9.3493 44 1 2.2677 -4.2033 -9.5977 45 1 1.0544 -1.8479 -6.4020 46 1 0.6259 -0.2754 -2.8506 47 1 1.6499 1.1107 -2.3692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484354126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:02 Heat of formation + Delta-G solvation = 35.793151 kcal Electronic energy + Delta-G solvation = -28704.345158 eV Core-core repulsion = 24852.129494 eV Total energy + Delta-G solvation = -3852.215664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.38415 -39.94141 -37.94946 -37.43505 -35.27667 -33.37824 -32.44195 -31.57526 -30.78072 -30.01258 -29.18124 -27.46885 -25.37415 -24.42809 -23.89868 -23.64970 -22.41542 -21.49106 -19.72690 -19.68784 -18.47145 -17.67716 -17.19630 -17.09801 -16.65245 -16.07409 -15.71739 -15.09556 -14.79597 -14.54232 -14.45052 -14.22981 -14.05437 -13.72403 -13.50207 -13.23231 -13.11308 -12.87527 -12.54552 -12.51338 -12.35110 -12.31361 -12.09158 -11.82151 -11.73500 -11.25277 -10.90172 -10.74466 -10.62893 -10.56313 -10.40601 -10.26537 -10.08107 -9.89812 -9.73625 -9.66348 -9.49555 -8.94070 -8.73750 -8.41704 -6.99790 -5.79789 -3.08358 -0.16076 0.53605 1.35502 2.40374 2.67852 2.91374 3.41415 3.46648 3.46968 3.74086 4.04885 4.16239 4.30157 4.37623 4.44005 4.53643 4.58526 4.72381 4.73305 4.82879 4.91858 5.06760 5.22596 5.26389 5.31256 5.38362 5.42564 5.50836 5.55748 5.61923 5.68027 5.82992 5.84764 5.84870 5.92565 5.96081 6.02293 6.13478 6.18085 6.26502 6.33734 6.38778 6.41375 6.54182 6.61522 6.84214 7.07507 7.36273 7.66939 7.70146 7.93022 8.38695 9.50166 10.06978 10.41983 11.42712 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020718 B = 0.002318 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.177620 B =12074.467063 C =12566.215237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.116 4.116 16 C 0.093 3.907 17 N -0.606 5.606 18 C 0.571 3.429 19 O -0.532 6.532 20 C -0.086 4.086 21 C -0.086 4.086 22 C -0.100 4.100 23 C -0.095 4.095 24 C -0.026 4.026 25 C -0.159 4.159 26 C 0.078 3.922 27 N -0.486 5.486 28 C 0.157 3.843 29 C -0.080 4.080 30 C 0.114 3.886 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.154 0.846 45 H 0.170 0.830 46 H 0.079 0.921 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.862 -0.564 -23.828 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.029 4.029 17 N -0.339 5.339 18 C 0.359 3.641 19 O -0.410 6.410 20 C -0.091 4.091 21 C -0.104 4.104 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.031 4.031 25 C -0.178 4.178 26 C -0.065 4.065 27 N -0.194 5.194 28 C -0.014 4.014 29 C -0.083 4.083 30 C -0.008 4.008 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.172 0.828 45 H 0.187 0.813 46 H 0.097 0.903 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.501 -0.580 -24.252 24.874 hybrid contribution 1.181 0.397 1.105 1.665 sum 6.682 -0.183 -23.147 24.093 Atomic orbital electron populations 1.22500 0.99201 1.00674 1.00497 1.20126 0.91830 0.95134 0.85378 0.93248 1.42355 1.78185 1.10650 1.05103 1.19163 1.36505 0.93824 0.87313 0.91280 1.24714 1.02220 0.95948 0.97976 1.69641 1.50902 1.08630 1.28983 0.86303 0.77780 0.78599 0.83699 1.21324 1.21759 1.21315 1.22690 0.95162 1.00336 0.94045 0.89984 1.22589 0.96460 1.04297 0.92008 1.22365 0.86559 0.99963 0.94046 1.48500 1.16371 1.64468 1.04519 1.17745 0.86495 0.78968 0.80888 1.90818 1.28492 1.46612 1.75076 1.19850 0.94083 0.98758 0.96408 1.21517 0.91165 0.98731 0.98998 1.20933 0.99758 0.96617 0.94630 1.21131 0.94950 0.97179 0.98050 1.18116 0.93528 0.96470 0.95032 1.21905 0.98356 0.98895 0.98671 1.22292 0.89041 0.97863 0.97344 1.67543 1.37212 1.10149 1.04475 1.23473 0.94523 0.90193 0.93218 1.18728 0.95323 0.98270 0.95987 1.22381 0.92104 0.99630 0.86715 0.93551 0.94355 0.92522 0.78294 0.93490 0.90071 0.89301 0.91340 0.91346 0.84489 0.84674 0.84655 0.84228 0.82834 0.81278 0.90255 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.23 37.16 0.34 -2.56 16 2 C 0.19 3.36 2.40 -67.93 -0.16 3.19 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -16.72 4.88 -53.43 -0.26 -16.98 16 5 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 6 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 9 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C -0.10 -1.51 2.64 -88.47 -0.23 -1.75 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 15 C -0.12 -1.56 6.19 -24.90 -0.15 -1.71 16 16 C 0.09 1.03 5.68 -3.07 -0.02 1.01 16 17 N -0.61 -7.78 3.33 -171.74 -0.57 -8.35 16 18 C 0.57 7.87 6.84 -12.46 -0.09 7.78 16 19 O -0.53 -8.86 15.68 5.29 0.08 -8.78 16 20 C -0.09 -1.01 5.42 -104.66 -0.57 -1.57 16 21 C -0.09 -0.77 8.51 -39.12 -0.33 -1.10 16 22 C -0.10 -0.71 9.93 -39.98 -0.40 -1.11 16 23 C -0.10 -0.70 9.79 -39.47 -0.39 -1.08 16 24 C -0.03 -0.26 5.74 -106.84 -0.61 -0.87 16 25 C -0.16 -1.32 9.88 -39.37 -0.39 -1.71 16 26 C 0.08 0.75 11.07 -17.97 -0.20 0.55 16 27 N -0.49 -6.15 10.30 -13.21 -0.14 -6.29 16 28 C 0.16 2.05 10.45 -17.06 -0.18 1.87 16 29 C -0.08 -0.96 5.76 -106.59 -0.61 -1.58 16 30 C 0.11 1.55 5.49 -2.52 -0.01 1.53 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.04 0.56 7.59 -51.93 -0.39 0.16 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.38 9.50 7.80 -40.82 -0.32 9.18 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.62 6.06 -51.93 -0.31 0.30 16 40 H 0.14 1.03 6.05 -52.49 -0.32 0.72 16 41 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 42 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 43 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.17 2.33 6.29 -52.49 -0.33 2.00 16 46 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 47 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -32.03 383.69 -10.35 -42.38 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.70 Total: 7.84 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -4.25 Total: -5.92 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.24 Total: -58.04 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.78 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.03 -10.35 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484354126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.168 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds