Wall clock time and date at job start Tue Mar 31 2020 23:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47047 * 2 1 4 4 N 1.46505 * 109.46921 * 120.00015 * 2 1 3 5 5 C 1.36932 * 119.99676 * 275.00174 * 4 2 1 6 6 H 1.08000 * 120.00585 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99914 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00035 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00255 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47238 * 59.99783 * 9 7 5 11 11 H 1.48504 * 109.47275 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46828 * 299.99908 * 9 7 5 13 13 C 1.53001 * 109.47347 * 239.99620 * 2 1 3 14 14 H 1.08996 * 110.88671 * 299.89466 * 13 2 1 15 15 C 1.55154 * 111.00598 * 175.96552 * 13 2 1 16 16 C 1.54315 * 102.94441 * 206.42763 * 15 13 2 17 17 N 1.47019 * 107.27413 * 22.19491 * 16 15 13 18 18 C 1.34778 * 125.65187 * 181.09625 * 17 16 15 19 19 O 1.21582 * 119.99778 * 184.82811 * 18 17 16 20 20 C 1.47565 * 119.99726 * 4.82663 * 18 17 16 21 21 C 1.38705 * 120.43319 * 311.26528 * 20 18 17 22 22 C 1.39007 * 120.74834 * 179.77056 * 21 20 18 23 23 C 1.36342 * 121.18983 * 0.51781 * 22 21 20 24 24 C 1.40356 * 119.93110 * 359.74508 * 23 22 21 25 25 C 1.40681 * 122.09920 * 180.02562 * 24 23 22 26 26 C 1.36262 * 118.66309 * 179.97438 * 25 24 23 27 27 N 1.32509 * 121.84248 * 0.02562 * 26 25 24 28 28 C 1.31318 * 122.72062 * 359.95037 * 27 26 25 29 29 C 1.40140 * 119.91534 * 0.04662 * 28 27 26 30 30 C 1.47425 * 108.70095 * 1.06178 * 17 16 15 31 31 H 1.09000 * 109.46960 * 174.88348 * 1 2 3 32 32 H 1.09001 * 109.46972 * 54.88663 * 1 2 3 33 33 H 1.08998 * 109.47574 * 294.89056 * 1 2 3 34 34 H 0.96995 * 119.99628 * 94.99430 * 4 2 1 35 35 H 0.97001 * 120.00416 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.72051 * 324.79542 * 15 13 2 37 37 H 1.08999 * 110.71542 * 88.05988 * 15 13 2 38 38 H 1.09001 * 109.88447 * 262.77473 * 16 15 13 39 39 H 1.09001 * 110.01135 * 141.68600 * 16 15 13 40 40 H 1.07993 * 119.62637 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.39880 * 180.24581 * 22 21 20 42 42 H 1.08007 * 120.03131 * 179.76563 * 23 22 21 43 43 H 1.07999 * 120.67162 * 359.95536 * 25 24 23 44 44 H 1.08002 * 119.07862 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.03967 * 180.02562 * 28 27 26 46 46 H 1.09007 * 110.36648 * 217.03694 * 30 17 16 47 47 H 1.08991 * 110.46585 * 94.75867 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3757 6 1 1.8925 1.0405 2.4242 7 6 2.6122 -0.6617 3.5090 8 7 2.9252 -1.9387 3.4500 9 14 2.7898 0.2700 5.1184 10 1 1.4671 0.8057 5.5288 11 1 3.2989 -0.6484 6.1685 12 1 3.7442 1.3932 4.9373 13 6 2.0401 -0.7213 -1.2492 14 1 1.6911 -1.7537 -1.2715 15 6 3.5877 -0.6544 -1.3371 16 6 3.8532 -0.7716 -2.8527 17 7 2.6239 -0.3571 -3.5446 18 6 2.4423 -0.3385 -4.8799 19 8 1.4119 0.1069 -5.3471 20 6 3.4939 -0.8588 -5.7749 21 6 4.8131 -0.4618 -5.6139 22 6 5.8098 -0.9514 -6.4502 23 6 5.5211 -1.8248 -7.4566 24 6 4.1983 -2.2485 -7.6582 25 6 3.8493 -3.1484 -8.6817 26 6 2.5431 -3.5132 -8.8139 27 7 1.6013 -3.0441 -8.0085 28 6 1.8558 -2.2025 -7.0331 29 6 3.1687 -1.7647 -6.8126 30 6 1.6226 0.0340 -2.5357 31 1 -0.3633 -1.0236 -0.0916 32 1 -0.3633 0.5911 -0.8407 33 1 -0.3634 0.4325 0.9322 34 1 2.2489 -1.6318 1.1526 35 1 3.2485 -2.3960 4.2420 36 1 3.9549 0.2975 -0.9537 37 1 4.0407 -1.4881 -0.8006 38 1 4.0925 -1.8038 -3.1085 39 1 4.6777 -0.1184 -3.1386 40 1 5.0696 0.2324 -4.8274 41 1 6.8305 -0.6307 -6.3028 42 1 6.3096 -2.1904 -8.0977 43 1 4.6014 -3.5419 -9.3493 44 1 2.2677 -4.2033 -9.5977 45 1 1.0544 -1.8479 -6.4020 46 1 0.6259 -0.2754 -2.8506 47 1 1.6499 1.1107 -2.3692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484354126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:01 Heat of formation + Delta-G solvation = 16.632680 kcal Electronic energy + Delta-G solvation = -28705.176019 eV Core-core repulsion = 24852.129494 eV Total energy + Delta-G solvation = -3853.046524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.17508 -40.93800 -39.11029 -38.19757 -36.80984 -34.40108 -33.92940 -32.27054 -32.05470 -30.93939 -30.60235 -28.77521 -26.51022 -25.69142 -24.89081 -24.58354 -23.39156 -22.80287 -21.09720 -20.63738 -19.30671 -19.01601 -18.46309 -17.99448 -17.54880 -17.23499 -16.66626 -16.41297 -15.76763 -15.64665 -15.39455 -15.26229 -15.17943 -14.93813 -14.68357 -14.55082 -14.11029 -14.01002 -13.86411 -13.66956 -13.34393 -13.19885 -13.09848 -12.97178 -12.86680 -12.74079 -12.50638 -12.30800 -12.21520 -11.98038 -11.63720 -11.54746 -11.42864 -11.26298 -11.05502 -10.89296 -10.53003 -10.19321 -9.78318 -9.10939 -8.96162 -7.89285 -5.16250 -0.87363 -0.15353 0.58949 1.48937 1.50329 1.51940 1.57606 1.80749 2.07225 2.59484 3.00332 3.20308 3.42560 3.44096 3.53123 3.63670 3.69568 3.70853 3.78463 3.86787 3.92493 4.13616 4.22559 4.29150 4.34980 4.39055 4.50611 4.54435 4.61422 4.62661 4.67703 4.73728 4.77347 4.84019 4.88554 4.95999 5.00997 5.05957 5.12505 5.20537 5.22114 5.31721 5.34478 5.38737 5.56467 5.59555 5.61251 5.75705 6.32163 6.35202 6.88586 6.94861 7.39843 8.15668 8.39387 9.33824 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020718 B = 0.002318 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.177620 B =12074.467063 C =12566.215237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 H 0.050 0.950 4 N -0.730 5.730 5 C -0.231 4.231 6 H 0.074 0.926 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.283 1.283 11 H -0.299 1.299 12 H -0.277 1.277 13 C -0.094 4.094 14 H 0.073 0.927 15 C -0.111 4.111 16 C 0.101 3.899 17 N -0.606 5.606 18 C 0.571 3.429 19 O -0.573 6.573 20 C -0.121 4.121 21 C -0.070 4.070 22 C -0.102 4.102 23 C -0.078 4.078 24 C -0.046 4.046 25 C -0.136 4.136 26 C 0.052 3.948 27 N -0.510 5.510 28 C 0.122 3.878 29 C -0.093 4.093 30 C 0.120 3.880 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.176 0.824 43 H 0.183 0.817 44 H 0.180 0.820 45 H 0.145 0.855 46 H 0.071 0.929 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.961 -0.047 -25.856 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.092 0.908 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.210 1.210 11 H -0.225 1.225 12 H -0.203 1.203 13 C -0.114 4.114 14 H 0.092 0.908 15 C -0.149 4.149 16 C -0.020 4.020 17 N -0.338 5.338 18 C 0.361 3.639 19 O -0.453 6.453 20 C -0.126 4.126 21 C -0.088 4.088 22 C -0.120 4.120 23 C -0.096 4.096 24 C -0.052 4.052 25 C -0.155 4.155 26 C -0.091 4.091 27 N -0.218 5.218 28 C -0.048 4.048 29 C -0.096 4.096 30 C -0.003 4.003 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.170 0.830 41 H 0.191 0.809 42 H 0.193 0.807 43 H 0.200 0.800 44 H 0.197 0.803 45 H 0.162 0.838 46 H 0.090 0.910 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.593 -0.028 -26.296 27.664 hybrid contribution 0.251 0.239 1.606 1.643 sum 8.844 0.211 -24.690 26.227 Atomic orbital electron populations 1.22380 0.98339 1.00769 1.00616 1.20288 0.92247 0.95004 0.84969 0.93171 1.42503 1.78320 1.10263 1.05915 1.19514 1.34434 0.94060 0.88294 0.90845 1.25427 1.03330 0.96785 1.01040 1.69790 1.52822 1.10045 1.29275 0.85336 0.77760 0.77423 0.79991 1.20984 1.22543 1.20343 1.22464 0.96378 0.99491 0.93074 0.90832 1.22503 0.95014 1.03569 0.93842 1.22394 0.86530 1.01281 0.91840 1.48514 1.16665 1.64282 1.04355 1.18153 0.86562 0.78139 0.81052 1.90782 1.30375 1.48424 1.75747 1.19691 0.94633 1.01034 0.97230 1.21827 0.90249 0.97632 0.99098 1.21361 1.00891 0.96023 0.93765 1.21615 0.94413 0.95701 0.97856 1.18507 0.94285 0.97164 0.95216 1.22369 0.98545 0.96787 0.97775 1.22792 0.89584 0.98874 0.97844 1.67438 1.39122 1.10377 1.04912 1.23168 0.95020 0.92215 0.94349 1.18831 0.95356 0.98673 0.96739 1.22219 0.92170 0.99624 0.86280 0.94004 0.91565 0.94462 0.79511 0.94228 0.90441 0.90451 0.90469 0.88390 0.83034 0.80884 0.80712 0.80007 0.80267 0.83816 0.91035 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.56 9.23 71.98 0.66 -4.90 16 2 C 0.18 6.66 2.40 44.99 0.11 6.77 16 3 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 4 N -0.73 -34.30 4.88 -322.94 -1.58 -35.88 16 5 C -0.23 -12.20 9.93 84.03 0.83 -11.37 16 6 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 7 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 8 N -0.97 -57.42 13.06 21.65 0.28 -57.14 16 9 Si 0.96 45.04 29.55 68.60 2.03 47.07 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 13 C -0.09 -2.80 2.64 -9.40 -0.02 -2.83 16 14 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.11 -2.94 6.19 31.78 0.20 -2.74 16 16 C 0.10 2.08 5.68 86.73 0.49 2.57 16 17 N -0.61 -15.42 3.33 -815.52 -2.71 -18.13 16 18 C 0.57 16.10 6.84 86.70 0.59 16.69 16 19 O -0.57 -20.24 15.68 -3.97 -0.06 -20.31 16 20 C -0.12 -2.76 5.42 -19.89 -0.11 -2.87 16 21 C -0.07 -1.04 8.51 22.57 0.19 -0.85 16 22 C -0.10 -0.95 9.93 22.01 0.22 -0.73 16 23 C -0.08 -0.77 9.79 22.34 0.22 -0.55 16 24 C -0.05 -0.79 5.74 -21.30 -0.12 -0.91 16 25 C -0.14 -1.84 9.88 22.41 0.22 -1.62 16 26 C 0.05 0.95 11.07 84.13 0.93 1.88 16 27 N -0.51 -13.48 10.30 -195.72 -2.02 -15.50 16 28 C 0.12 3.45 10.45 85.23 0.89 4.34 16 29 C -0.09 -2.23 5.76 -21.14 -0.12 -2.35 16 30 C 0.12 3.26 5.49 86.86 0.48 3.74 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.90 7.59 -2.39 -0.02 1.88 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.37 18.97 7.80 -92.71 -0.72 18.24 16 35 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.08 2.11 8.04 -2.39 -0.02 2.09 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.10 1.46 6.06 -2.39 -0.01 1.45 16 40 H 0.15 1.73 6.05 -2.91 -0.02 1.71 16 41 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 42 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 43 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 45 H 0.14 4.55 6.29 -2.91 -0.02 4.53 16 46 H 0.07 2.06 8.09 -2.38 -0.02 2.04 16 47 H 0.08 2.05 8.03 -2.39 -0.02 2.03 16 Total: -1.00 -73.38 383.69 2.34 -71.04 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.27 Total: 28.18 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 6.13 Total: 0.66 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -6.02 Total: -126.64 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.06 Total: -20.31 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.38 2.34 -71.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484354126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.670 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds