Wall clock time and date at job start Tue Mar 31 2020 23:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46851 * 2 1 4 4 N 1.46502 * 109.46882 * 240.00080 * 2 1 3 5 5 C 1.36934 * 119.99961 * 85.27379 * 4 2 1 6 6 H 1.07997 * 120.00303 * 359.72553 * 5 4 2 7 7 C 1.38815 * 119.99979 * 179.72105 * 5 4 2 8 8 N 1.31624 * 119.99695 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47273 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47023 * 120.00408 * 9 7 5 12 12 H 1.48495 * 109.47254 * 240.00010 * 9 7 5 13 13 C 1.52999 * 109.47115 * 120.00035 * 2 1 3 14 14 H 1.08998 * 110.88762 * 59.93691 * 13 2 1 15 15 C 1.55158 * 111.00139 * 183.86254 * 13 2 1 16 16 C 1.54328 * 102.94217 * 153.57525 * 15 13 2 17 17 N 1.47028 * 107.26997 * 337.80567 * 16 15 13 18 18 C 1.34776 * 125.64977 * 178.90256 * 17 16 15 19 19 O 1.21581 * 120.00431 * 185.19226 * 18 17 16 20 20 C 1.47566 * 119.99770 * 5.19824 * 18 17 16 21 21 C 1.38707 * 120.43604 * 46.24001 * 20 18 17 22 22 C 1.39002 * 120.75015 * 179.71189 * 21 20 18 23 23 C 1.36345 * 121.19327 * 0.60367 * 22 21 20 24 24 C 1.40354 * 119.92601 * 359.68751 * 23 22 21 25 25 C 1.40683 * 122.10081 * 179.97438 * 24 23 22 26 26 C 1.36257 * 118.66821 * 180.02562 * 25 24 23 27 27 N 1.32517 * 121.83893 * 0.02720 * 26 25 24 28 28 C 1.31312 * 122.71962 * 359.95211 * 27 26 25 29 29 C 1.40136 * 119.92000 * 0.04613 * 28 27 26 30 30 C 1.47426 * 108.70277 * 358.93956 * 17 16 15 31 31 H 1.09000 * 109.46977 * 185.09975 * 1 2 3 32 32 H 1.09005 * 109.46827 * 305.09299 * 1 2 3 33 33 H 1.08995 * 109.47469 * 65.09606 * 1 2 3 34 34 H 0.97004 * 119.99376 * 264.99353 * 4 2 1 35 35 H 0.96996 * 119.99884 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.72355 * 271.93564 * 15 13 2 37 37 H 1.09005 * 110.72221 * 35.21592 * 15 13 2 38 38 H 1.09002 * 109.88331 * 218.39257 * 16 15 13 39 39 H 1.08997 * 110.01069 * 97.29379 * 16 15 13 40 40 H 1.07999 * 119.62261 * 0.02885 * 21 20 18 41 41 H 1.08007 * 119.40388 * 180.29026 * 22 21 20 42 42 H 1.07999 * 120.03423 * 179.66764 * 23 22 21 43 43 H 1.08002 * 120.66565 * 0.02562 * 25 24 23 44 44 H 1.07999 * 119.08162 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.04185 * 180.02562 * 28 27 26 46 46 H 1.08996 * 110.36654 * 265.29150 * 30 17 16 47 47 H 1.09001 * 110.45766 * 143.01382 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1544 -0.0061 -2.3744 6 1 1.8976 1.0417 -2.4229 7 6 2.6225 -0.6591 -3.5064 8 7 2.9352 -1.9363 -3.4473 9 14 2.8089 0.2748 -5.1134 10 1 2.3942 1.6870 -4.9162 11 1 4.2279 0.2322 -5.5490 12 1 1.9532 -0.3524 -6.1524 13 6 2.0400 -0.7213 1.2492 14 1 1.6886 -1.7527 1.2731 15 6 3.5879 -0.6580 1.3348 16 6 3.8553 -0.7743 2.8503 17 7 2.6280 -0.3561 3.5435 18 6 2.4482 -0.3358 4.8790 19 8 1.3580 -0.0606 5.3416 20 6 3.5746 -0.6473 5.7799 21 6 4.8207 -0.0753 5.5706 22 6 5.8848 -0.3596 6.4187 23 6 5.7404 -1.2150 7.4705 24 6 4.4981 -1.8205 7.7152 25 6 4.2981 -2.7103 8.7864 26 6 3.0627 -3.2586 8.9588 27 7 2.0533 -2.9766 8.1478 28 6 2.1690 -2.1555 7.1296 29 6 3.3991 -1.5385 6.8654 30 6 1.6262 0.0363 2.5356 31 1 -0.3633 -1.0236 0.0913 32 1 -0.3633 0.5908 0.8409 33 1 -0.3634 0.4327 -0.9320 34 1 2.2491 -1.6318 -1.1526 35 1 3.2626 -2.3925 -4.2382 36 1 4.0384 -1.4933 0.7986 37 1 3.9570 0.2927 0.9500 38 1 4.6811 -0.1211 3.1323 39 1 4.0939 -1.8059 3.1089 40 1 4.9646 0.6026 4.7423 41 1 6.8446 0.1017 6.2382 42 1 6.5812 -1.4267 8.1145 43 1 5.1075 -2.9538 9.4587 44 1 2.9018 -3.9428 9.7787 45 1 1.3172 -1.9563 6.4962 46 1 1.6578 1.1129 2.3685 47 1 0.6285 -0.2688 2.8511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484354127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:06 Heat of formation + Delta-G solvation = 35.610268 kcal Electronic energy + Delta-G solvation = -28689.132649 eV Core-core repulsion = 24836.909054 eV Total energy + Delta-G solvation = -3852.223594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.38522 -39.93843 -37.94670 -37.43902 -35.27698 -33.37695 -32.44439 -31.57392 -30.78920 -29.99302 -29.18595 -27.47206 -25.36808 -24.42880 -23.89507 -23.65105 -22.41774 -21.49318 -19.72207 -19.69081 -18.45609 -17.70992 -17.21688 -17.09243 -16.63110 -16.10340 -15.62635 -15.11033 -14.82056 -14.55372 -14.43391 -14.22285 -14.07773 -13.71768 -13.51598 -13.23673 -13.10890 -12.83822 -12.55489 -12.52992 -12.32699 -12.32551 -12.09615 -11.82571 -11.74453 -11.25405 -10.92928 -10.75116 -10.62546 -10.56578 -10.39800 -10.22062 -10.08021 -9.88521 -9.73386 -9.67381 -9.49687 -8.95328 -8.73388 -8.41587 -6.99834 -5.80375 -3.08820 -0.16897 0.53390 1.34567 2.40910 2.69411 2.91224 3.40256 3.46594 3.48381 3.74185 4.05126 4.16557 4.30182 4.37496 4.44400 4.53451 4.58493 4.71894 4.74105 4.83102 4.91798 5.06928 5.22264 5.26631 5.31360 5.38170 5.43222 5.50712 5.55500 5.62306 5.68303 5.82684 5.84807 5.85734 5.92513 5.95637 6.01954 6.14179 6.17810 6.26676 6.33936 6.38791 6.41510 6.54336 6.61464 6.83973 7.07328 7.36662 7.67596 7.70251 7.93335 8.38133 9.49757 10.06648 10.41564 11.42275 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021103 B = 0.002303 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.519232 B =12157.161021 C =12655.115423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.932 5.932 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.116 4.116 16 C 0.093 3.907 17 N -0.607 5.607 18 C 0.571 3.429 19 O -0.532 6.532 20 C -0.087 4.087 21 C -0.083 4.083 22 C -0.101 4.101 23 C -0.094 4.094 24 C -0.027 4.027 25 C -0.159 4.159 26 C 0.078 3.922 27 N -0.486 5.486 28 C 0.157 3.843 29 C -0.080 4.080 30 C 0.113 3.887 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.154 0.846 45 H 0.171 0.829 46 H 0.072 0.928 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 0.877 23.908 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.029 4.029 17 N -0.339 5.339 18 C 0.360 3.640 19 O -0.410 6.410 20 C -0.092 4.092 21 C -0.102 4.102 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.032 4.032 25 C -0.179 4.179 26 C -0.065 4.065 27 N -0.194 5.194 28 C -0.014 4.014 29 C -0.083 4.083 30 C -0.009 4.009 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.172 0.828 45 H 0.188 0.812 46 H 0.091 0.909 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.976 0.679 24.367 25.098 hybrid contribution 1.148 0.520 -1.137 1.697 sum 7.124 1.199 23.230 24.327 Atomic orbital electron populations 1.22497 0.99186 1.00689 1.00477 1.20128 0.91845 0.95120 0.85382 0.93259 1.42373 1.78139 1.10601 1.05205 1.19254 1.36129 0.93861 0.87396 0.91171 1.24721 1.02257 0.95960 0.98012 1.69665 1.50934 1.08660 1.28846 0.86157 0.77278 0.78830 0.84162 1.20595 1.21941 1.21940 1.22688 0.95162 1.00345 0.94048 0.89983 1.22591 0.96455 1.04281 0.92015 1.22361 0.86654 0.99926 0.94009 1.48490 1.16515 1.64421 1.04495 1.17745 0.87591 0.77813 0.80899 1.90810 1.25625 1.49195 1.75399 1.19860 0.94254 0.99128 0.95967 1.21504 0.91088 0.98518 0.99076 1.20936 0.99124 0.97525 0.94426 1.21133 0.96036 0.96216 0.97840 1.18122 0.93511 0.96696 0.94872 1.21903 0.99375 0.98355 0.98216 1.22293 0.88668 0.97944 0.97643 1.67550 1.33288 1.14260 1.04303 1.23507 0.95761 0.89125 0.93022 1.18747 0.95467 0.98457 0.95637 1.22385 0.92346 0.99451 0.86745 0.93539 0.94358 0.92534 0.78293 0.93598 0.89320 0.90079 0.91328 0.91377 0.84479 0.84670 0.84654 0.84239 0.82845 0.81163 0.90940 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.23 37.16 0.34 -2.55 16 2 C 0.19 3.35 2.40 -67.93 -0.16 3.19 16 3 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 4 N -0.72 -16.70 4.88 -53.42 -0.26 -16.96 16 5 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.14 13.06 55.49 0.72 -26.41 16 9 Si 0.90 21.76 29.55 -169.99 -5.02 16.73 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C -0.10 -1.52 2.63 -88.47 -0.23 -1.75 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.56 6.19 -24.89 -0.15 -1.71 16 16 C 0.09 1.03 5.95 -3.06 -0.02 1.01 16 17 N -0.61 -7.76 3.33 -171.73 -0.57 -8.34 16 18 C 0.57 7.85 6.89 -12.46 -0.09 7.77 16 19 O -0.53 -8.84 15.48 5.29 0.08 -8.76 16 20 C -0.09 -1.02 5.38 -104.66 -0.56 -1.58 16 21 C -0.08 -0.74 8.41 -39.12 -0.33 -1.07 16 22 C -0.10 -0.71 9.93 -39.98 -0.40 -1.11 16 23 C -0.09 -0.69 9.79 -39.47 -0.39 -1.07 16 24 C -0.03 -0.26 5.74 -106.84 -0.61 -0.87 16 25 C -0.16 -1.32 9.88 -39.37 -0.39 -1.70 16 26 C 0.08 0.75 11.07 -17.97 -0.20 0.55 16 27 N -0.49 -6.14 10.30 -13.22 -0.14 -6.28 16 28 C 0.16 2.04 10.44 -17.06 -0.18 1.87 16 29 C -0.08 -0.96 5.76 -106.59 -0.61 -1.57 16 30 C 0.11 1.53 5.54 -2.53 -0.01 1.51 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.04 0.56 7.60 -51.93 -0.39 0.16 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.38 9.50 7.80 -40.82 -0.32 9.18 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 38 H 0.07 0.62 5.85 -51.93 -0.30 0.32 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.14 1.04 6.30 -52.49 -0.33 0.71 16 41 H 0.14 0.58 8.06 -52.48 -0.42 0.15 16 42 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.17 2.35 6.22 -52.49 -0.33 2.03 16 46 H 0.07 0.95 8.03 -51.93 -0.42 0.54 16 47 H 0.08 1.14 7.99 -51.93 -0.41 0.72 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -32.00 383.57 -10.34 -42.34 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.69 Total: 7.80 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -4.24 Total: -5.90 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.24 Total: -57.99 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.00 -10.34 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484354127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.948 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds