Wall clock time and date at job start Tue Mar 31 2020 22:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88644 * 2 1 4 4 C 1.54904 * 111.00304 * 123.92847 * 2 1 3 5 5 N 1.47427 * 104.83039 * 155.08596 * 4 2 1 6 6 C 1.34777 * 125.64714 * 155.91404 * 5 4 2 7 7 O 1.21277 * 120.00332 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99771 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.46964 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47152 * 180.02562 * 9 8 6 11 11 N 1.46502 * 109.47106 * 179.97438 * 10 9 8 12 12 C 1.36367 * 125.96289 * 269.68728 * 11 10 9 13 13 O 1.35628 * 125.98868 * 0.04187 * 12 11 10 14 14 N 1.30906 * 108.02038 * 179.88806 * 12 11 10 15 15 N 1.40112 * 107.94263 * 0.37487 * 14 12 11 16 16 C 1.30910 * 107.93593 * 359.76407 * 15 14 12 17 17 O 1.35627 * 125.98353 * 179.97438 * 16 15 14 18 18 C 1.47486 * 108.75805 * 335.88531 * 5 4 2 19 19 C 1.54318 * 107.03710 * 1.02957 * 18 5 4 20 20 H 1.09002 * 110.72246 * 140.68541 * 19 18 5 21 21 N 1.46496 * 110.72309 * 263.78912 * 19 18 5 22 22 C 1.36945 * 119.99718 * 271.15655 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 300.00154 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00200 * 26 24 22 30 30 H 1.09002 * 109.47380 * 183.87335 * 1 2 3 31 31 H 1.09002 * 109.47485 * 303.87719 * 1 2 3 32 32 H 1.09008 * 109.47341 * 63.87842 * 1 2 3 33 33 H 1.08998 * 110.36447 * 273.91717 * 4 2 1 34 34 H 1.08996 * 110.37036 * 36.24632 * 4 2 1 35 35 H 1.08994 * 109.47710 * 299.99679 * 8 6 5 36 36 H 1.09004 * 109.47175 * 60.00258 * 8 6 5 37 37 H 1.09000 * 109.47323 * 299.99985 * 9 8 6 38 38 H 1.08997 * 109.47157 * 60.00003 * 9 8 6 39 39 H 1.09000 * 109.46851 * 300.00099 * 10 9 8 40 40 H 1.09001 * 109.46774 * 59.99679 * 10 9 8 41 41 H 0.96700 * 113.99711 * 90.00236 * 13 12 11 42 42 H 0.96703 * 113.99740 * 270.01930 * 17 16 15 43 43 H 1.08997 * 110.03701 * 241.66362 * 18 5 4 44 44 H 1.09006 * 109.96013 * 120.35364 * 18 5 4 45 45 H 0.96996 * 120.00499 * 91.15386 * 21 19 18 46 46 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8072 1.1999 5 7 3.4271 -1.2434 0.7727 6 6 4.4476 -1.5624 1.5933 7 8 4.3008 -1.5013 2.7956 8 6 5.7710 -1.9949 1.0168 9 6 6.7489 -2.2959 2.1544 10 6 8.0928 -2.7344 1.5691 11 7 9.0293 -3.0220 2.6584 12 6 9.8829 -2.1298 3.2371 13 8 10.0129 -0.8211 2.9058 14 7 10.5525 -2.7572 4.1708 15 7 10.1238 -4.0910 4.1872 16 6 9.2039 -4.2301 3.2663 17 8 8.5409 -5.3753 2.9688 18 6 3.4690 -1.2739 -0.7012 19 6 2.0861 -0.8075 -1.2026 20 1 2.1891 -0.1698 -2.0806 21 7 1.2267 -1.9568 -1.4970 22 6 1.2429 -2.5221 -2.7442 23 1 1.8888 -2.1203 -3.5108 24 6 0.4290 -3.6114 -3.0231 25 7 -0.3586 -4.1007 -2.0889 26 14 0.4505 -4.3821 -4.7246 27 1 -0.5005 -5.5219 -4.7638 28 1 0.0501 -3.3678 -5.7325 29 1 1.8196 -4.8697 -5.0298 30 1 -0.3634 -1.0253 0.0694 31 1 -0.3634 0.5728 0.8532 32 1 -0.3634 0.4525 -0.9228 33 1 2.1560 -0.1729 2.0835 34 1 1.4518 -1.6710 1.4017 35 1 5.6289 -2.8910 0.4128 36 1 6.1741 -1.1967 0.3934 37 1 6.8911 -1.3995 2.7580 38 1 6.3461 -3.0938 2.7782 39 1 7.9510 -3.6307 0.9652 40 1 8.4953 -1.9361 0.9455 41 1 9.4289 -0.2302 3.4007 42 1 8.9719 -5.9147 2.2917 43 1 3.6664 -2.2881 -1.0483 44 1 4.2428 -0.5981 -1.0656 45 1 0.6463 -2.3174 -0.8086 46 1 -0.9276 -4.8617 -2.2839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484891790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:37 Heat of formation + Delta-G solvation = -10.786733 kcal Electronic energy + Delta-G solvation = -29411.779652 eV Core-core repulsion = 25146.694869 eV Total energy + Delta-G solvation = -4265.084782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.58897 -39.96487 -38.52327 -37.89450 -37.43200 -35.93268 -34.03468 -32.86116 -32.23553 -30.58701 -29.90504 -28.05559 -27.74074 -25.80049 -23.96702 -23.11103 -23.03748 -22.16782 -21.79767 -19.40916 -19.31214 -19.09266 -18.76033 -17.67924 -17.07751 -17.00534 -16.46297 -16.20487 -15.76816 -15.56643 -14.89286 -14.65227 -14.36596 -14.26526 -13.80699 -13.35707 -13.25160 -13.10675 -12.94616 -12.91066 -12.75254 -12.41516 -12.27672 -12.00749 -11.99684 -11.65747 -11.58699 -11.27701 -11.21300 -11.00618 -10.85872 -10.83728 -10.56024 -10.38377 -10.35278 -10.04282 -9.80285 -9.77061 -9.70567 -9.10703 -8.38095 -7.17289 -5.93181 -3.24001 1.18314 1.39399 1.89843 2.74403 2.88786 3.12325 3.32059 3.37260 3.39071 3.46738 4.04458 4.28191 4.43698 4.56129 4.72766 4.75285 4.86149 4.91974 4.95912 5.07893 5.11041 5.23523 5.28693 5.33974 5.42232 5.54092 5.65620 5.68289 5.76487 5.81964 5.84544 5.86536 6.08292 6.16589 6.24523 6.26807 6.42424 6.50726 6.64379 6.66338 6.84365 6.96103 7.53373 7.55607 7.75318 8.24254 8.29179 9.36320 9.90612 10.25158 11.28634 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.002381 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.728700 B =11755.564281 C =12972.895991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.114 3.886 5 N -0.607 5.607 6 C 0.525 3.475 7 O -0.557 6.557 8 C -0.132 4.132 9 C -0.117 4.117 10 C 0.099 3.901 11 N -0.509 5.509 12 C 0.407 3.593 13 O -0.437 6.437 14 N -0.298 5.298 15 N -0.299 5.299 16 C 0.409 3.591 17 O -0.433 6.433 18 C 0.070 3.930 19 C 0.171 3.829 20 H 0.071 0.929 21 N -0.711 5.711 22 C -0.250 4.250 23 H 0.072 0.928 24 C -0.007 4.007 25 N -0.928 5.928 26 Si 0.908 3.092 27 H -0.291 1.291 28 H -0.285 1.285 29 H -0.286 1.286 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.414 0.586 42 H 0.412 0.588 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.387 0.613 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.241 6.502 4.727 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.096 0.904 4 C -0.008 4.008 5 N -0.339 5.339 6 C 0.313 3.687 7 O -0.436 6.436 8 C -0.172 4.172 9 C -0.156 4.156 10 C -0.024 4.024 11 N -0.229 5.229 12 C 0.097 3.903 13 O -0.237 6.237 14 N -0.143 5.143 15 N -0.144 5.144 16 C 0.099 3.901 17 O -0.233 6.233 18 C -0.056 4.056 19 C 0.059 3.941 20 H 0.089 0.911 21 N -0.353 5.353 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.204 4.204 25 N -0.575 5.575 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.212 1.212 29 H -0.212 1.212 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.272 0.728 42 H 0.270 0.730 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.223 0.777 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.219 6.112 6.386 18.471 hybrid contribution -1.305 -0.362 -2.117 2.513 sum 14.914 5.750 4.270 16.544 Atomic orbital electron populations 1.21543 0.93316 1.03020 1.00982 1.22627 0.97042 0.98405 0.95353 0.90388 1.22262 0.82884 0.98367 0.97271 1.48588 1.11998 1.65410 1.07924 1.20078 0.85017 0.77392 0.86168 1.90687 1.83537 1.54632 1.14740 1.21489 0.93013 1.03826 0.98911 1.21658 0.92282 1.03453 0.98194 1.22058 0.88812 1.04052 0.87451 1.47158 1.33269 1.10014 1.32409 1.21318 0.90857 0.85497 0.92672 1.84921 1.64163 1.09505 1.65130 1.78356 1.22171 0.98492 1.15261 1.78373 1.10564 1.07362 1.18063 1.21348 0.93794 0.82012 0.92961 1.85005 1.48403 1.27558 1.62323 1.23409 1.01678 1.02180 0.78323 1.21201 0.88279 0.89905 0.94723 0.91067 1.42442 1.47267 1.32956 1.12585 1.19168 1.20018 1.09877 0.89016 0.91047 1.24761 0.99038 0.98810 0.97791 1.69645 1.28552 1.26821 1.32529 0.86274 0.77256 0.78747 0.83878 1.21676 1.21158 1.21235 0.91181 0.93688 0.92074 0.91340 0.91234 0.88265 0.88664 0.90764 0.89928 0.88166 0.87913 0.72774 0.72966 0.90347 0.92618 0.77741 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.85 37.16 0.33 -1.61 16 2 C -0.11 -1.64 3.51 -88.47 -0.31 -1.96 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.11 1.77 6.35 -2.53 -0.02 1.75 16 5 N -0.61 -9.10 3.34 -170.15 -0.57 -9.67 16 6 C 0.53 7.65 7.85 -10.99 -0.09 7.57 16 7 O -0.56 -9.99 16.24 5.56 0.09 -9.90 16 8 C -0.13 -1.26 4.89 -27.88 -0.14 -1.40 16 9 C -0.12 -1.04 4.83 -26.73 -0.13 -1.17 16 10 C 0.10 0.64 6.01 -4.04 -0.02 0.62 16 11 N -0.51 -4.56 2.76 -120.05 -0.33 -4.89 16 12 C 0.41 4.09 9.15 -88.81 -0.81 3.28 16 13 O -0.44 -3.10 13.57 -18.58 -0.25 -3.35 16 14 N -0.30 -3.91 12.72 29.65 0.38 -3.54 16 15 N -0.30 -3.97 12.72 29.65 0.38 -3.60 16 16 C 0.41 4.26 9.15 -88.81 -0.81 3.44 16 17 O -0.43 -3.42 13.58 -18.58 -0.25 -3.68 16 18 C 0.07 1.02 6.26 -2.81 -0.02 1.00 16 19 C 0.17 2.86 3.37 -66.10 -0.22 2.64 16 20 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 21 N -0.71 -15.50 4.56 -51.65 -0.24 -15.74 16 22 C -0.25 -6.17 9.97 -15.06 -0.15 -6.32 16 23 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 25 N -0.93 -26.14 13.06 55.49 0.72 -25.42 16 26 Si 0.91 20.77 29.55 -169.99 -5.02 15.75 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 30 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 33 H 0.07 1.02 8.04 -51.93 -0.42 0.61 16 34 H 0.07 1.20 7.98 -51.93 -0.41 0.79 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.41 1.01 9.06 45.56 0.41 1.42 16 42 H 0.41 0.93 9.06 45.56 0.41 1.34 16 43 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.39 9.20 6.21 -40.82 -0.25 8.95 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -35.38 389.51 -6.91 -42.29 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.20 Total: 8.31 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -2.49 Total: 7.56 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.34 Total: -62.84 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.41 Total: -16.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.38 -6.91 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484891790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.505 kcal (2) G-P(sol) polarization free energy of solvation -35.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds