Wall clock time and date at job start Tue Mar 31 2020 22:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88644 * 2 1 4 4 C 1.54904 * 111.00304 * 123.92847 * 2 1 3 5 5 N 1.47427 * 104.83039 * 155.08596 * 4 2 1 6 6 C 1.34777 * 125.64714 * 155.91404 * 5 4 2 7 7 O 1.21277 * 120.00332 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99771 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.46964 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47152 * 180.02562 * 9 8 6 11 11 N 1.46502 * 109.47106 * 179.97438 * 10 9 8 12 12 C 1.36367 * 125.96289 * 269.68728 * 11 10 9 13 13 O 1.35628 * 125.98868 * 0.04187 * 12 11 10 14 14 N 1.30906 * 108.02038 * 179.88806 * 12 11 10 15 15 N 1.40112 * 107.94263 * 0.37487 * 14 12 11 16 16 C 1.30910 * 107.93593 * 359.76407 * 15 14 12 17 17 O 1.35627 * 125.98353 * 179.97438 * 16 15 14 18 18 C 1.47486 * 108.75805 * 335.88531 * 5 4 2 19 19 C 1.54318 * 107.03710 * 1.02957 * 18 5 4 20 20 H 1.09002 * 110.72246 * 140.68541 * 19 18 5 21 21 N 1.46496 * 110.72309 * 263.78912 * 19 18 5 22 22 C 1.36945 * 119.99718 * 271.15655 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 300.00154 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00200 * 26 24 22 30 30 H 1.09002 * 109.47380 * 183.87335 * 1 2 3 31 31 H 1.09002 * 109.47485 * 303.87719 * 1 2 3 32 32 H 1.09008 * 109.47341 * 63.87842 * 1 2 3 33 33 H 1.08998 * 110.36447 * 273.91717 * 4 2 1 34 34 H 1.08996 * 110.37036 * 36.24632 * 4 2 1 35 35 H 1.08994 * 109.47710 * 299.99679 * 8 6 5 36 36 H 1.09004 * 109.47175 * 60.00258 * 8 6 5 37 37 H 1.09000 * 109.47323 * 299.99985 * 9 8 6 38 38 H 1.08997 * 109.47157 * 60.00003 * 9 8 6 39 39 H 1.09000 * 109.46851 * 300.00099 * 10 9 8 40 40 H 1.09001 * 109.46774 * 59.99679 * 10 9 8 41 41 H 0.96700 * 113.99711 * 90.00236 * 13 12 11 42 42 H 0.96703 * 113.99740 * 270.01930 * 17 16 15 43 43 H 1.08997 * 110.03701 * 241.66362 * 18 5 4 44 44 H 1.09006 * 109.96013 * 120.35364 * 18 5 4 45 45 H 0.96996 * 120.00499 * 91.15386 * 21 19 18 46 46 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8072 1.1999 5 7 3.4271 -1.2434 0.7727 6 6 4.4476 -1.5624 1.5933 7 8 4.3008 -1.5013 2.7956 8 6 5.7710 -1.9949 1.0168 9 6 6.7489 -2.2959 2.1544 10 6 8.0928 -2.7344 1.5691 11 7 9.0293 -3.0220 2.6584 12 6 9.8829 -2.1298 3.2371 13 8 10.0129 -0.8211 2.9058 14 7 10.5525 -2.7572 4.1708 15 7 10.1238 -4.0910 4.1872 16 6 9.2039 -4.2301 3.2663 17 8 8.5409 -5.3753 2.9688 18 6 3.4690 -1.2739 -0.7012 19 6 2.0861 -0.8075 -1.2026 20 1 2.1891 -0.1698 -2.0806 21 7 1.2267 -1.9568 -1.4970 22 6 1.2429 -2.5221 -2.7442 23 1 1.8888 -2.1203 -3.5108 24 6 0.4290 -3.6114 -3.0231 25 7 -0.3586 -4.1007 -2.0889 26 14 0.4505 -4.3821 -4.7246 27 1 -0.5005 -5.5219 -4.7638 28 1 0.0501 -3.3678 -5.7325 29 1 1.8196 -4.8697 -5.0298 30 1 -0.3634 -1.0253 0.0694 31 1 -0.3634 0.5728 0.8532 32 1 -0.3634 0.4525 -0.9228 33 1 2.1560 -0.1729 2.0835 34 1 1.4518 -1.6710 1.4017 35 1 5.6289 -2.8910 0.4128 36 1 6.1741 -1.1967 0.3934 37 1 6.8911 -1.3995 2.7580 38 1 6.3461 -3.0938 2.7782 39 1 7.9510 -3.6307 0.9652 40 1 8.4953 -1.9361 0.9455 41 1 9.4289 -0.2302 3.4007 42 1 8.9719 -5.9147 2.2917 43 1 3.6664 -2.2881 -1.0483 44 1 4.2428 -0.5981 -1.0656 45 1 0.6463 -2.3174 -0.8086 46 1 -0.9276 -4.8617 -2.2839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484891790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:35 Heat of formation + Delta-G solvation = -42.780898 kcal Electronic energy + Delta-G solvation = -29413.167023 eV Core-core repulsion = 25146.694869 eV Total energy + Delta-G solvation = -4266.472153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.31848 -41.14598 -39.13813 -39.12840 -38.04922 -36.67516 -35.66128 -34.03089 -33.29148 -32.19178 -30.68848 -29.31525 -28.81039 -26.82772 -25.73078 -24.00290 -23.83576 -23.15904 -22.59870 -20.69086 -20.21082 -19.76116 -19.63648 -19.33464 -18.07502 -17.75006 -17.36791 -17.29378 -16.76980 -16.40889 -16.21846 -15.94049 -15.60229 -15.22038 -15.01689 -14.62808 -14.45482 -14.08300 -13.99599 -13.66648 -13.56705 -13.39151 -13.29043 -13.09367 -13.02304 -12.88893 -12.83922 -12.72578 -12.38930 -12.29244 -12.16866 -11.99100 -11.95655 -11.52571 -11.44147 -11.37398 -11.12761 -10.98250 -10.82488 -10.56057 -9.61719 -8.98435 -7.89936 -5.18088 0.50911 0.72931 1.13606 1.52152 1.53390 1.59362 1.62950 2.06012 2.21756 2.59802 2.87464 3.38979 3.42488 3.49247 3.71620 3.87121 3.91548 3.95181 4.03093 4.11314 4.13490 4.25023 4.36492 4.39371 4.45206 4.57333 4.65299 4.66297 4.68221 4.76613 4.89106 4.99047 5.01147 5.02780 5.10718 5.22597 5.29953 5.32776 5.36741 5.55151 5.61493 6.23882 6.31180 6.45392 6.60810 6.79478 7.15365 7.38827 8.14161 8.35863 9.33213 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.002381 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.728700 B =11755.564281 C =12972.895991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 H 0.110 0.890 4 C 0.113 3.887 5 N -0.610 5.610 6 C 0.516 3.484 7 O -0.597 6.597 8 C -0.121 4.121 9 C -0.108 4.108 10 C 0.103 3.897 11 N -0.505 5.505 12 C 0.419 3.581 13 O -0.433 6.433 14 N -0.343 5.343 15 N -0.344 5.344 16 C 0.417 3.583 17 O -0.438 6.438 18 C 0.082 3.918 19 C 0.159 3.841 20 H 0.084 0.916 21 N -0.724 5.724 22 C -0.232 4.232 23 H 0.086 0.914 24 C -0.075 4.075 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.306 1.306 28 H -0.279 1.279 29 H -0.276 1.276 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.434 0.566 42 H 0.435 0.565 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.373 0.627 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.064 8.367 2.742 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.119 4.119 3 H 0.128 0.872 4 C -0.010 4.010 5 N -0.343 5.343 6 C 0.307 3.693 7 O -0.479 6.479 8 C -0.161 4.161 9 C -0.147 4.147 10 C -0.019 4.019 11 N -0.224 5.224 12 C 0.107 3.893 13 O -0.236 6.236 14 N -0.187 5.187 15 N -0.189 5.189 16 C 0.106 3.894 17 O -0.242 6.242 18 C -0.043 4.043 19 C 0.049 3.951 20 H 0.102 0.898 21 N -0.364 5.364 22 C -0.364 4.364 23 H 0.104 0.896 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.234 1.234 28 H -0.205 1.205 29 H -0.202 1.202 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.297 0.703 42 H 0.298 0.702 43 H 0.079 0.921 44 H 0.117 0.883 45 H 0.206 0.794 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.089 8.028 4.363 20.266 hybrid contribution -1.902 -0.830 -1.466 2.541 sum 16.188 7.198 2.897 17.951 Atomic orbital electron populations 1.21473 0.93945 1.01174 1.01808 1.22581 0.96437 0.99395 0.93485 0.87159 1.22174 0.83227 0.97476 0.98079 1.48719 1.11829 1.65447 1.08260 1.21032 0.86362 0.76256 0.85686 1.90672 1.84428 1.56193 1.16652 1.21521 0.90083 1.05337 0.99182 1.21528 0.93398 1.02124 0.97697 1.22229 0.86896 1.06045 0.86691 1.47203 1.33248 1.09264 1.32695 1.21342 0.89980 0.86392 0.91540 1.84900 1.65000 1.08375 1.65371 1.78233 1.24161 0.98895 1.17427 1.78249 1.12651 1.07974 1.19993 1.21379 0.92798 0.82965 0.92265 1.84974 1.48525 1.27156 1.63498 1.23194 1.01118 1.02139 0.77851 1.21521 0.88718 0.88673 0.96226 0.89792 1.42628 1.48120 1.34270 1.11398 1.19621 1.18074 1.08569 0.90117 0.89638 1.25485 1.00011 1.00392 1.00830 1.69816 1.30380 1.27615 1.34390 0.85307 0.77087 0.77449 0.80456 1.23351 1.20488 1.20201 0.94573 0.91394 0.92414 0.90923 0.94250 0.87152 0.84989 0.91321 0.93129 0.86058 0.85149 0.70337 0.70159 0.92084 0.88256 0.79368 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 8.85 71.98 0.64 -3.01 16 2 C -0.10 -2.65 3.51 -9.40 -0.03 -2.68 16 3 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.11 3.40 6.35 86.85 0.55 3.96 16 5 N -0.61 -17.05 3.34 -810.64 -2.71 -19.76 16 6 C 0.52 14.06 7.85 87.66 0.69 14.75 16 7 O -0.60 -21.18 16.24 -3.02 -0.05 -21.23 16 8 C -0.12 -1.89 4.89 29.85 0.15 -1.74 16 9 C -0.11 -1.66 4.83 30.60 0.15 -1.51 16 10 C 0.10 0.96 6.01 86.38 0.52 1.48 16 11 N -0.50 -8.02 2.76 -755.18 -2.08 -10.11 16 12 C 0.42 7.79 9.15 179.72 1.65 9.44 16 13 O -0.43 -5.06 13.57 -89.41 -1.21 -6.27 16 14 N -0.34 -8.96 12.72 -173.66 -2.21 -11.17 16 15 N -0.34 -9.20 12.72 -173.66 -2.21 -11.41 16 16 C 0.42 8.29 9.15 179.72 1.65 9.94 16 17 O -0.44 -6.35 13.58 -89.39 -1.21 -7.56 16 18 C 0.08 2.12 6.26 86.64 0.54 2.66 16 19 C 0.16 4.91 3.37 46.18 0.16 5.07 16 20 H 0.08 2.43 8.11 -2.39 -0.02 2.41 16 21 N -0.72 -31.22 4.56 -317.33 -1.45 -32.66 16 22 C -0.23 -11.23 9.97 84.03 0.84 -10.39 16 23 H 0.09 3.83 7.83 -2.91 -0.02 3.80 16 24 C -0.08 -3.96 5.50 84.86 0.47 -3.49 16 25 N -0.97 -56.28 13.06 21.65 0.28 -56.00 16 26 Si 0.97 42.72 29.55 68.60 2.03 44.75 16 27 H -0.31 -14.19 7.11 99.48 0.71 -13.49 16 28 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 29 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 30 H 0.04 1.29 6.43 -2.39 -0.02 1.27 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.07 2.11 8.04 -2.39 -0.02 2.09 16 34 H 0.04 1.41 7.98 -2.39 -0.02 1.39 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 38 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 39 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.43 1.00 9.06 -74.06 -0.67 0.33 16 42 H 0.44 1.15 9.06 -74.06 -0.67 0.48 16 43 H 0.06 1.83 8.04 -2.39 -0.02 1.81 16 44 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.37 18.20 6.21 -92.71 -0.58 17.62 16 46 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -80.66 389.51 -3.75 -84.40 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.88 Total: 22.56 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 7.95 Total: 24.45 kcal Atomic # 7 Polarization: -130.73 SS G_CDS: -10.37 Total: -141.10 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -2.48 Total: -35.06 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -80.66 -3.75 -84.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484891790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.624 kcal (2) G-P(sol) polarization free energy of solvation -80.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds