Wall clock time and date at job start Tue Mar 31 2020 22:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 110.63795 * 2 1 4 4 C 1.54341 * 110.99964 * 236.92772 * 2 1 3 5 5 N 1.47019 * 107.26297 * 219.60162 * 4 2 1 6 6 C 1.34777 * 125.64846 * 178.84906 * 5 4 2 7 7 O 1.21288 * 119.99593 * 359.71594 * 6 5 4 8 8 C 1.50697 * 120.00369 * 179.71752 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 6 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.36375 * 125.96219 * 269.68798 * 11 10 9 13 13 O 1.35633 * 125.98754 * 0.03587 * 12 11 10 14 14 N 1.30915 * 108.02328 * 179.88805 * 12 11 10 15 15 N 1.40111 * 107.93737 * 0.37325 * 14 12 11 16 16 C 1.30906 * 107.94298 * 359.76349 * 15 14 12 17 17 O 1.35631 * 125.98926 * 179.97438 * 16 15 14 18 18 C 1.47423 * 108.70295 * 358.58704 * 5 4 2 19 19 C 1.54908 * 104.83544 * 24.35575 * 18 5 4 20 20 H 1.09003 * 111.00269 * 204.87870 * 19 18 5 21 21 N 1.46494 * 111.00330 * 81.06728 * 19 18 5 22 22 C 1.36936 * 120.00219 * 86.45594 * 21 19 18 23 23 H 1.07993 * 119.99798 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99937 * 179.97438 * 22 21 19 25 25 N 1.31614 * 120.00091 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99945 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46923 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.47000 * 120.00164 * 26 24 22 29 29 H 1.48495 * 109.47396 * 240.00582 * 26 24 22 30 30 H 1.08999 * 109.46996 * 296.85544 * 1 2 3 31 31 H 1.08998 * 109.46838 * 56.85251 * 1 2 3 32 32 H 1.08994 * 109.46825 * 176.85394 * 1 2 3 33 33 H 1.09000 * 109.99332 * 100.12684 * 4 2 1 34 34 H 1.09004 * 109.77824 * 338.95329 * 4 2 1 35 35 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 36 36 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 37 37 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 38 38 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 39 39 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 40 40 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 41 41 H 0.96696 * 113.99374 * 89.99965 * 13 12 11 42 42 H 0.96705 * 113.99721 * 270.02135 * 17 16 15 43 43 H 1.09002 * 110.37084 * 143.19637 * 18 5 4 44 44 H 1.09001 * 110.36684 * 265.51593 * 18 5 4 45 45 H 0.97008 * 119.99854 * 266.45225 * 21 19 18 46 46 H 0.96997 * 120.00234 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0832 -0.7863 -1.2074 5 7 3.2494 -1.5470 -0.7355 6 6 4.0004 -2.3784 -1.4846 7 8 3.7296 -2.5524 -2.6540 8 6 5.1766 -3.0919 -0.8694 9 6 5.8531 -3.9661 -1.9271 10 6 7.0468 -4.6910 -1.3022 11 7 7.6950 -5.5276 -2.3152 12 6 7.3967 -6.8299 -2.5887 13 8 6.4479 -7.5769 -1.9711 14 7 8.1845 -7.2318 -3.5540 15 7 9.0176 -6.1613 -3.9050 16 6 8.7059 -5.1418 -3.1453 17 8 9.2870 -3.9167 -3.1777 18 6 3.4652 -1.2448 0.6912 19 6 2.0790 -0.7935 1.2150 20 1 2.1821 -0.1497 2.0886 21 7 1.2295 -1.9487 1.5150 22 6 1.3001 -2.5500 2.7432 23 1 1.9824 -2.1729 3.4906 24 6 0.4948 -3.6444 3.0276 25 7 -0.3363 -4.1043 2.1165 26 14 0.5917 -4.4651 4.7028 27 1 1.5968 -3.7629 5.5407 28 1 -0.7363 -4.3990 5.3640 29 1 0.9913 -5.8855 4.5359 30 1 -0.3633 0.4642 0.9168 31 1 -0.3633 0.5619 -0.8604 32 1 -0.3633 -1.0261 -0.0564 33 1 2.3849 -0.0960 -1.9952 34 1 1.3216 -1.4701 -1.5825 35 1 4.8318 -3.7180 -0.0464 36 1 5.8903 -2.3587 -0.4938 37 1 6.1979 -3.3398 -2.7499 38 1 5.1395 -4.6993 -2.3031 39 1 7.7606 -3.9581 -0.9260 40 1 6.7016 -5.3174 -0.4798 41 1 5.5775 -7.5316 -2.3898 42 1 10.0483 -3.8268 -2.5882 43 1 3.7992 -2.1365 1.2216 44 1 4.1930 -0.4410 0.8028 45 1 0.6169 -2.2876 0.8435 46 1 -0.8988 -4.8691 2.3151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484891791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:41 Heat of formation + Delta-G solvation = -11.161468 kcal Electronic energy + Delta-G solvation = -29732.875505 eV Core-core repulsion = 25467.774473 eV Total energy + Delta-G solvation = -4265.101032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.51825 -39.92721 -38.45242 -37.85266 -37.35756 -35.85273 -33.97474 -32.82150 -32.21246 -30.59003 -29.83654 -28.01787 -27.73634 -25.77257 -23.99818 -23.05122 -22.98039 -22.08688 -21.70822 -19.35002 -19.29595 -19.01103 -18.75160 -17.60930 -17.00059 -16.93263 -16.42048 -16.19640 -15.71122 -15.54862 -14.89164 -14.57772 -14.39300 -14.11544 -13.76884 -13.31790 -13.16979 -13.08378 -12.93520 -12.82518 -12.67176 -12.37564 -12.22677 -12.09745 -11.87966 -11.65137 -11.51870 -11.21462 -11.17917 -11.03051 -10.84026 -10.76914 -10.57108 -10.34736 -10.28298 -10.02611 -9.77492 -9.70273 -9.66110 -9.14454 -8.33192 -7.14006 -5.93363 -3.23728 1.25559 1.45982 1.96475 2.83756 2.95785 3.19748 3.31268 3.36959 3.40098 3.54140 4.12255 4.36609 4.43356 4.65266 4.78222 4.82938 4.93714 4.99302 5.03614 5.06383 5.16843 5.23036 5.36829 5.43922 5.45034 5.52111 5.66574 5.75417 5.82997 5.83571 5.88182 5.92189 6.07950 6.11483 6.25120 6.27397 6.39748 6.51586 6.66178 6.73163 6.82681 7.03502 7.54022 7.62148 7.81609 8.24200 8.37962 9.36300 9.91537 10.26032 11.28531 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011205 B = 0.002834 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.173657 B = 9878.788559 C =11534.849986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.079 0.921 4 C 0.116 3.884 5 N -0.601 5.601 6 C 0.528 3.472 7 O -0.556 6.556 8 C -0.131 4.131 9 C -0.117 4.117 10 C 0.099 3.901 11 N -0.508 5.508 12 C 0.410 3.590 13 O -0.436 6.436 14 N -0.299 5.299 15 N -0.300 5.300 16 C 0.406 3.594 17 O -0.434 6.434 18 C 0.067 3.933 19 C 0.171 3.829 20 H 0.071 0.929 21 N -0.710 5.710 22 C -0.248 4.248 23 H 0.072 0.928 24 C -0.007 4.007 25 N -0.927 5.927 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.416 0.584 42 H 0.410 0.590 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.387 0.613 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.255 4.891 -4.467 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 H 0.097 0.903 4 C -0.006 4.006 5 N -0.333 5.333 6 C 0.317 3.683 7 O -0.436 6.436 8 C -0.172 4.172 9 C -0.155 4.155 10 C -0.024 4.024 11 N -0.228 5.228 12 C 0.100 3.900 13 O -0.237 6.237 14 N -0.144 5.144 15 N -0.144 5.144 16 C 0.096 3.904 17 O -0.234 6.234 18 C -0.059 4.059 19 C 0.059 3.941 20 H 0.089 0.911 21 N -0.351 5.351 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.204 4.204 25 N -0.574 5.574 26 Si 0.737 3.263 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.275 0.725 42 H 0.268 0.732 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.223 0.777 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.853 3.770 -6.032 16.468 hybrid contribution -0.954 0.345 1.980 2.225 sum 13.898 4.115 -4.052 15.050 Atomic orbital electron populations 1.21601 0.93434 1.02987 1.00973 1.22493 0.97121 0.98541 0.95138 0.90277 1.21946 0.87884 0.94340 0.96451 1.48330 1.29412 1.43761 1.11845 1.20044 0.83607 0.78773 0.85886 1.90685 1.71831 1.64342 1.16723 1.21481 0.96378 0.99782 0.99558 1.21650 0.95816 0.99421 0.98652 1.22060 0.96019 0.94612 0.89671 1.47164 1.31844 1.11496 1.32290 1.21374 0.95246 0.80152 0.93244 1.84931 1.22093 1.63230 1.53412 1.78373 1.07935 1.17552 1.10509 1.78340 1.19525 0.95402 1.21166 1.21305 0.90171 0.88005 0.90941 1.84988 1.48925 1.22951 1.66533 1.23431 1.01349 1.00692 0.80413 1.21354 0.88583 0.89934 0.94275 0.91133 1.42399 1.45367 1.32234 1.15079 1.19244 1.18672 1.09127 0.90859 0.90970 1.24758 0.98886 0.98866 0.97919 1.69665 1.27242 1.27137 1.33386 0.86152 0.77343 0.79226 0.83599 1.20493 1.21786 1.21847 0.92068 0.93650 0.91268 0.92380 0.91501 0.88006 0.88812 0.90162 0.90585 0.88365 0.87706 0.72491 0.73166 0.90115 0.92601 0.77717 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.73 37.16 0.32 -1.64 16 2 C -0.11 -1.61 3.40 -88.77 -0.30 -1.91 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.79 6.47 -3.06 -0.02 1.77 16 5 N -0.60 -9.34 3.33 -170.51 -0.57 -9.91 16 6 C 0.53 8.28 7.85 -10.99 -0.09 8.19 16 7 O -0.56 -10.60 16.31 5.55 0.09 -10.51 16 8 C -0.13 -1.42 4.71 -27.89 -0.13 -1.55 16 9 C -0.12 -1.17 4.83 -26.73 -0.13 -1.30 16 10 C 0.10 0.75 6.01 -4.04 -0.02 0.72 16 11 N -0.51 -5.02 2.76 -120.05 -0.33 -5.35 16 12 C 0.41 4.68 9.15 -88.80 -0.81 3.87 16 13 O -0.44 -4.02 13.58 -18.60 -0.25 -4.27 16 14 N -0.30 -4.22 12.72 29.66 0.38 -3.84 16 15 N -0.30 -4.13 12.72 29.66 0.38 -3.76 16 16 C 0.41 4.36 9.15 -88.81 -0.81 3.55 16 17 O -0.43 -3.31 13.58 -18.59 -0.25 -3.56 16 18 C 0.07 0.97 6.38 -2.53 -0.02 0.96 16 19 C 0.17 2.84 3.44 -65.79 -0.23 2.62 16 20 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 21 N -0.71 -15.50 4.74 -51.36 -0.24 -15.74 16 22 C -0.25 -6.11 9.98 -15.06 -0.15 -6.26 16 23 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 25 N -0.93 -26.15 13.06 55.49 0.72 -25.42 16 26 Si 0.91 20.75 29.55 -169.99 -5.02 15.72 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.23 6.37 -51.93 -0.33 0.89 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.16 7.78 -51.93 -0.40 0.76 16 35 H 0.10 1.09 7.85 -51.93 -0.41 0.69 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 38 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.42 2.05 9.06 45.56 0.41 2.47 16 42 H 0.41 0.76 9.06 45.56 0.41 1.17 16 43 H 0.08 1.24 7.48 -51.93 -0.39 0.85 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.39 9.33 6.09 -40.82 -0.25 9.08 16 46 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -35.56 388.56 -6.87 -42.43 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.14 Total: 9.62 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -2.48 Total: 8.73 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: 0.34 Total: -64.01 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.41 Total: -18.35 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.56 -6.87 -42.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484891791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.270 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds