Wall clock time and date at job start Tue Mar 31 2020 22:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 110.63795 * 2 1 4 4 C 1.54341 * 110.99964 * 236.92772 * 2 1 3 5 5 N 1.47019 * 107.26297 * 219.60162 * 4 2 1 6 6 C 1.34777 * 125.64846 * 178.84906 * 5 4 2 7 7 O 1.21288 * 119.99593 * 359.71594 * 6 5 4 8 8 C 1.50697 * 120.00369 * 179.71752 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 6 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.36375 * 125.96219 * 269.68798 * 11 10 9 13 13 O 1.35633 * 125.98754 * 0.03587 * 12 11 10 14 14 N 1.30915 * 108.02328 * 179.88805 * 12 11 10 15 15 N 1.40111 * 107.93737 * 0.37325 * 14 12 11 16 16 C 1.30906 * 107.94298 * 359.76349 * 15 14 12 17 17 O 1.35631 * 125.98926 * 179.97438 * 16 15 14 18 18 C 1.47423 * 108.70295 * 358.58704 * 5 4 2 19 19 C 1.54908 * 104.83544 * 24.35575 * 18 5 4 20 20 H 1.09003 * 111.00269 * 204.87870 * 19 18 5 21 21 N 1.46494 * 111.00330 * 81.06728 * 19 18 5 22 22 C 1.36936 * 120.00219 * 86.45594 * 21 19 18 23 23 H 1.07993 * 119.99798 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99937 * 179.97438 * 22 21 19 25 25 N 1.31614 * 120.00091 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99945 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46923 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.47000 * 120.00164 * 26 24 22 29 29 H 1.48495 * 109.47396 * 240.00582 * 26 24 22 30 30 H 1.08999 * 109.46996 * 296.85544 * 1 2 3 31 31 H 1.08998 * 109.46838 * 56.85251 * 1 2 3 32 32 H 1.08994 * 109.46825 * 176.85394 * 1 2 3 33 33 H 1.09000 * 109.99332 * 100.12684 * 4 2 1 34 34 H 1.09004 * 109.77824 * 338.95329 * 4 2 1 35 35 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 36 36 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 37 37 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 38 38 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 39 39 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 40 40 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 41 41 H 0.96696 * 113.99374 * 89.99965 * 13 12 11 42 42 H 0.96705 * 113.99721 * 270.02135 * 17 16 15 43 43 H 1.09002 * 110.37084 * 143.19637 * 18 5 4 44 44 H 1.09001 * 110.36684 * 265.51593 * 18 5 4 45 45 H 0.97008 * 119.99854 * 266.45225 * 21 19 18 46 46 H 0.96997 * 120.00234 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0832 -0.7863 -1.2074 5 7 3.2494 -1.5470 -0.7355 6 6 4.0004 -2.3784 -1.4846 7 8 3.7296 -2.5524 -2.6540 8 6 5.1766 -3.0919 -0.8694 9 6 5.8531 -3.9661 -1.9271 10 6 7.0468 -4.6910 -1.3022 11 7 7.6950 -5.5276 -2.3152 12 6 7.3967 -6.8299 -2.5887 13 8 6.4479 -7.5769 -1.9711 14 7 8.1845 -7.2318 -3.5540 15 7 9.0176 -6.1613 -3.9050 16 6 8.7059 -5.1418 -3.1453 17 8 9.2870 -3.9167 -3.1777 18 6 3.4652 -1.2448 0.6912 19 6 2.0790 -0.7935 1.2150 20 1 2.1821 -0.1497 2.0886 21 7 1.2295 -1.9487 1.5150 22 6 1.3001 -2.5500 2.7432 23 1 1.9824 -2.1729 3.4906 24 6 0.4948 -3.6444 3.0276 25 7 -0.3363 -4.1043 2.1165 26 14 0.5917 -4.4651 4.7028 27 1 1.5968 -3.7629 5.5407 28 1 -0.7363 -4.3990 5.3640 29 1 0.9913 -5.8855 4.5359 30 1 -0.3633 0.4642 0.9168 31 1 -0.3633 0.5619 -0.8604 32 1 -0.3633 -1.0261 -0.0564 33 1 2.3849 -0.0960 -1.9952 34 1 1.3216 -1.4701 -1.5825 35 1 4.8318 -3.7180 -0.0464 36 1 5.8903 -2.3587 -0.4938 37 1 6.1979 -3.3398 -2.7499 38 1 5.1395 -4.6993 -2.3031 39 1 7.7606 -3.9581 -0.9260 40 1 6.7016 -5.3174 -0.4798 41 1 5.5775 -7.5316 -2.3898 42 1 10.0483 -3.8268 -2.5882 43 1 3.7992 -2.1365 1.2216 44 1 4.1930 -0.4410 0.8028 45 1 0.6169 -2.2876 0.8435 46 1 -0.8988 -4.8691 2.3151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484891791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:39 Heat of formation + Delta-G solvation = -43.415696 kcal Electronic energy + Delta-G solvation = -29734.274154 eV Core-core repulsion = 25467.774473 eV Total energy + Delta-G solvation = -4266.499680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.32638 -41.14676 -39.14096 -39.11568 -38.05630 -36.68335 -35.62693 -34.03792 -33.29411 -32.20235 -30.69494 -29.32516 -28.81459 -26.82891 -25.76769 -23.99457 -23.84176 -23.11562 -22.60672 -20.64106 -20.26489 -19.77134 -19.66315 -19.26380 -18.05908 -17.75298 -17.46834 -17.26705 -16.82758 -16.40971 -16.16642 -16.00181 -15.55906 -15.23563 -14.96605 -14.60280 -14.42790 -14.10289 -13.93102 -13.70220 -13.53820 -13.45817 -13.32884 -13.12814 -12.98923 -12.90166 -12.84135 -12.80505 -12.38581 -12.26259 -12.05476 -12.00517 -11.93062 -11.53874 -11.46590 -11.34022 -11.13954 -11.00380 -10.83418 -10.56725 -9.62860 -8.92125 -7.89844 -5.17457 0.49202 0.72558 1.12388 1.50436 1.52409 1.60801 1.64852 2.10120 2.20893 2.59446 2.86260 3.40088 3.44313 3.48018 3.71384 3.86365 3.90165 3.97245 4.01913 4.12750 4.13795 4.24054 4.35388 4.38751 4.45114 4.57543 4.64280 4.65708 4.70903 4.83021 4.87190 4.97942 5.00522 5.01943 5.09799 5.22268 5.27965 5.30737 5.43855 5.54334 5.61903 6.21432 6.31332 6.44738 6.62821 6.78315 7.18062 7.38901 8.15085 8.36626 9.33769 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011205 B = 0.002834 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.173657 B = 9878.788559 C =11534.849986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.117 0.883 4 C 0.114 3.886 5 N -0.606 5.606 6 C 0.515 3.485 7 O -0.600 6.600 8 C -0.120 4.120 9 C -0.108 4.108 10 C 0.104 3.896 11 N -0.504 5.504 12 C 0.414 3.586 13 O -0.438 6.438 14 N -0.341 5.341 15 N -0.343 5.343 16 C 0.421 3.579 17 O -0.433 6.433 18 C 0.078 3.922 19 C 0.156 3.844 20 H 0.085 0.915 21 N -0.723 5.723 22 C -0.227 4.227 23 H 0.087 0.913 24 C -0.075 4.075 25 N -0.971 5.971 26 Si 0.964 3.036 27 H -0.259 1.259 28 H -0.303 1.303 29 H -0.301 1.301 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.133 0.867 40 H 0.117 0.883 41 H 0.432 0.568 42 H 0.436 0.564 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.372 0.628 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.533 7.248 -2.662 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.118 4.118 3 H 0.135 0.865 4 C -0.009 4.009 5 N -0.338 5.338 6 C 0.306 3.694 7 O -0.483 6.483 8 C -0.160 4.160 9 C -0.147 4.147 10 C -0.018 4.018 11 N -0.224 5.224 12 C 0.103 3.897 13 O -0.241 6.241 14 N -0.186 5.186 15 N -0.188 5.188 16 C 0.110 3.890 17 O -0.237 6.237 18 C -0.047 4.047 19 C 0.046 3.954 20 H 0.103 0.897 21 N -0.363 5.363 22 C -0.359 4.359 23 H 0.105 0.895 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.795 3.205 27 H -0.183 1.183 28 H -0.231 1.231 29 H -0.229 1.229 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.125 0.875 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.151 0.849 40 H 0.136 0.864 41 H 0.295 0.705 42 H 0.299 0.701 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.205 0.795 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.192 6.198 -4.182 18.748 hybrid contribution -1.678 -0.215 1.386 2.187 sum 15.514 5.983 -2.796 16.861 Atomic orbital electron populations 1.21532 0.94263 1.00884 1.01877 1.22477 0.96354 0.99840 0.93159 0.86453 1.21944 0.87453 0.94049 0.97420 1.48506 1.29198 1.43715 1.12373 1.20979 0.84536 0.78378 0.85533 1.90664 1.73203 1.65602 1.18800 1.21492 0.95080 1.00232 0.99228 1.21514 0.96280 0.98682 0.98187 1.22209 0.95664 0.95058 0.88841 1.47205 1.31587 1.11091 1.32500 1.21410 0.94998 0.80789 0.92495 1.84900 1.22813 1.63034 1.53397 1.78251 1.09315 1.18722 1.12273 1.78225 1.21006 0.96484 1.23065 1.21331 0.89689 0.88153 0.89851 1.84966 1.50115 1.20987 1.67595 1.23349 1.00393 1.01731 0.79254 1.21703 0.89129 0.88668 0.95875 0.89724 1.42594 1.46181 1.33580 1.13925 1.19683 1.16714 1.07749 0.91749 0.89541 1.25462 0.99850 1.00567 1.00842 1.69830 1.29145 1.27949 1.35324 0.85197 0.76941 0.77870 0.80482 1.18296 1.23132 1.22906 0.92286 0.91378 0.95027 0.91105 0.94778 0.87498 0.85102 0.91793 0.92874 0.84854 0.86442 0.70511 0.70067 0.90764 0.88297 0.79498 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 8.73 71.98 0.63 -3.05 16 2 C -0.10 -2.56 3.40 -9.60 -0.03 -2.60 16 3 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.11 3.39 6.47 86.74 0.56 3.95 16 5 N -0.61 -17.62 3.33 -811.76 -2.70 -20.32 16 6 C 0.52 15.45 7.85 87.66 0.69 16.14 16 7 O -0.60 -23.03 16.31 -3.05 -0.05 -23.08 16 8 C -0.12 -2.26 4.71 29.85 0.14 -2.12 16 9 C -0.11 -1.97 4.83 30.59 0.15 -1.82 16 10 C 0.10 1.24 6.01 86.38 0.52 1.76 16 11 N -0.50 -9.11 2.76 -755.16 -2.08 -11.19 16 12 C 0.41 9.24 9.15 179.71 1.65 10.89 16 13 O -0.44 -7.77 13.58 -89.46 -1.21 -8.98 16 14 N -0.34 -9.74 12.72 -173.64 -2.21 -11.95 16 15 N -0.34 -9.46 12.72 -173.65 -2.21 -11.66 16 16 C 0.42 8.45 9.15 179.71 1.65 10.10 16 17 O -0.43 -5.49 13.58 -89.44 -1.21 -6.70 16 18 C 0.08 1.95 6.38 86.85 0.55 2.51 16 19 C 0.16 4.76 3.44 46.38 0.16 4.92 16 20 H 0.09 2.39 8.13 -2.39 -0.02 2.37 16 21 N -0.72 -31.07 4.74 -316.39 -1.50 -32.57 16 22 C -0.23 -10.91 9.98 84.03 0.84 -10.07 16 23 H 0.09 3.84 7.83 -2.91 -0.02 3.82 16 24 C -0.08 -3.95 5.50 84.86 0.47 -3.49 16 25 N -0.97 -56.42 13.06 21.65 0.28 -56.14 16 26 Si 0.96 42.70 29.55 68.60 2.03 44.73 16 27 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 28 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 29 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.03 1.14 6.37 -2.39 -0.02 1.13 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.03 1.22 7.78 -2.39 -0.02 1.20 16 35 H 0.11 1.97 7.85 -2.39 -0.02 1.95 16 36 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 38 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 39 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.43 4.11 9.06 -74.06 -0.67 3.44 16 42 H 0.44 0.18 9.06 -74.05 -0.67 -0.49 16 43 H 0.07 2.01 7.48 -2.39 -0.02 1.99 16 44 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.37 18.32 6.09 -92.70 -0.56 17.76 16 46 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -81.25 388.56 -3.77 -85.02 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.86 Total: 25.73 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: 7.96 Total: 27.11 kcal Atomic # 7 Polarization: -133.41 SS G_CDS: -10.42 Total: -143.82 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -2.48 Total: -38.76 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -81.25 -3.77 -85.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484891791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.601 kcal (2) G-P(sol) polarization free energy of solvation -81.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds