Wall clock time and date at job start Tue Mar 31 2020 23:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47292 * 2 1 4 4 C 1.53000 * 109.47274 * 240.00102 * 2 1 3 5 5 N 1.46503 * 109.47118 * 185.00095 * 4 2 1 6 6 C 1.34774 * 120.00211 * 180.02562 * 5 4 2 7 7 O 1.21557 * 119.99775 * 359.97438 * 6 5 4 8 8 C 1.47856 * 120.00255 * 180.02562 * 6 5 4 9 9 C 1.39623 * 120.49873 * 359.72707 * 8 6 5 10 10 N 1.31700 * 120.82623 * 179.70145 * 9 8 6 11 11 C 1.31811 * 122.01214 * 0.58428 * 10 9 8 12 12 C 1.39394 * 120.91815 * 359.70240 * 11 10 9 13 13 C 1.48415 * 120.46764 * 179.97438 * 12 11 10 14 14 C 1.39332 * 120.11634 * 179.74800 * 13 12 11 15 15 C 1.38024 * 119.87712 * 179.69834 * 14 13 12 16 16 C 1.38316 * 120.11586 * 0.59778 * 15 14 13 17 17 C 1.38323 * 120.24546 * 359.67468 * 16 15 14 18 18 C 1.38022 * 120.11993 * 0.02562 * 17 16 15 19 19 C 1.39514 * 119.06135 * 0.02562 * 12 11 10 20 20 N 1.46498 * 109.46837 * 119.99895 * 2 1 3 21 21 C 1.46505 * 120.00187 * 60.00427 * 20 2 1 22 22 C 1.36938 * 120.00385 * 239.99682 * 20 2 1 23 23 H 1.08004 * 119.99303 * 21.92059 * 22 20 2 24 24 C 1.38803 * 120.00691 * 201.91970 * 22 20 2 25 25 N 1.31626 * 119.99663 * 12.73338 * 24 22 20 26 26 Si 1.86797 * 120.00290 * 192.73719 * 24 22 20 27 27 H 1.48501 * 109.47398 * 60.00068 * 26 24 22 28 28 H 1.48498 * 109.47329 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47303 * 299.99975 * 26 24 22 30 30 H 1.09000 * 109.46897 * 60.00016 * 1 2 3 31 31 H 1.09004 * 109.47292 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47330 * 299.99977 * 1 2 3 33 33 H 1.09006 * 109.47165 * 304.99732 * 4 2 1 34 34 H 1.08999 * 109.47004 * 65.00195 * 4 2 1 35 35 H 0.96998 * 120.00002 * 359.97438 * 5 4 2 36 36 H 1.08002 * 119.58951 * 359.96974 * 9 8 6 37 37 H 1.08006 * 119.53993 * 179.67771 * 11 10 9 38 38 H 1.08003 * 120.06157 * 359.97438 * 14 13 12 39 39 H 1.07997 * 119.94293 * 180.31605 * 15 14 13 40 40 H 1.08003 * 119.88155 * 179.69904 * 16 15 14 41 41 H 1.08003 * 119.94184 * 179.97438 * 17 16 15 42 42 H 1.08003 * 120.06077 * 180.02562 * 18 17 16 43 43 H 1.08007 * 120.90542 * 179.97438 * 19 12 11 44 44 H 1.08996 * 109.47268 * 94.30986 * 21 20 2 45 45 H 1.08994 * 109.46974 * 214.31137 * 21 20 2 46 46 H 1.08997 * 109.46664 * 334.31039 * 21 20 2 47 47 H 0.97004 * 119.99380 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4282 -2.1911 7 8 3.5687 -1.8842 -3.1420 8 6 5.6467 -1.5348 -2.1316 9 6 6.3518 -1.0106 -1.0465 10 7 7.6638 -1.1071 -0.9840 11 6 8.3680 -1.6859 -1.9362 12 6 7.7445 -2.2307 -3.0576 13 6 8.5472 -2.8796 -4.1240 14 6 7.9160 -3.4264 -5.2393 15 6 8.6677 -4.0232 -6.2312 16 6 10.0443 -4.0899 -6.1135 17 6 10.6756 -3.5536 -5.0057 18 6 9.9341 -2.9491 -4.0109 19 6 6.3554 -2.1564 -3.1637 20 7 2.0182 -0.6906 1.1962 21 6 1.6644 -2.0932 1.4280 22 6 2.8055 -0.0252 2.0976 23 1 2.7850 1.0539 2.1393 24 6 3.6300 -0.7373 2.9578 25 7 3.8493 -2.0183 2.7489 26 14 4.4280 0.1220 4.4117 27 1 3.3738 0.6739 5.3002 28 1 5.2538 -0.8517 5.1700 29 1 5.2903 1.2270 3.9213 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6054 -1.7198 -1.2952 34 1 1.7517 -0.1582 -2.1369 35 1 3.9824 -0.4621 -0.4319 36 1 5.8143 -0.5237 -0.2462 37 1 9.4430 -1.7383 -1.8464 38 1 6.8407 -3.3795 -5.3297 39 1 8.1800 -4.4429 -7.0985 40 1 10.6284 -4.5620 -6.8895 41 1 11.7507 -3.6087 -4.9186 42 1 10.4280 -2.5303 -3.1465 43 1 5.8416 -2.5683 -4.0199 44 1 2.4538 -2.7362 1.0390 45 1 1.5487 -2.2667 2.4979 46 1 0.7273 -2.3202 0.9197 47 1 4.4252 -2.5160 3.3502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485309818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:31 Heat of formation + Delta-G solvation = 48.203397 kcal Electronic energy + Delta-G solvation = -28634.344144 eV Core-core repulsion = 24782.666628 eV Total energy + Delta-G solvation = -3851.677515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.64969 -39.28939 -38.47488 -36.71950 -33.92899 -33.42944 -32.48467 -31.83110 -31.07500 -29.44986 -29.13037 -26.21525 -26.04157 -24.38774 -24.08187 -23.06433 -22.17266 -21.68097 -19.96680 -19.37945 -18.05657 -16.98126 -16.87291 -16.58248 -16.50652 -15.42346 -15.28561 -15.18208 -14.73800 -14.52954 -14.16675 -14.03139 -13.86324 -13.70629 -13.45840 -12.99043 -12.95113 -12.81651 -12.67779 -12.30060 -12.22197 -12.11121 -11.63939 -11.57665 -11.20780 -11.11122 -10.80663 -10.74055 -10.43837 -10.34870 -10.33891 -9.93559 -9.89510 -9.82772 -9.52631 -9.27449 -9.19210 -8.62429 -8.48941 -8.28731 -6.86404 -5.79207 -3.26879 0.38762 0.90295 1.16504 1.69106 3.12374 3.35116 3.42049 3.42963 3.57290 3.62939 4.06646 4.25554 4.42465 4.43203 4.59363 4.72055 4.77133 4.86228 4.92669 5.08776 5.16802 5.26041 5.33322 5.35650 5.40163 5.46982 5.57179 5.73954 5.79989 5.88884 5.92267 6.05081 6.07846 6.12267 6.19508 6.26640 6.30697 6.35629 6.39903 6.55591 6.66059 6.72624 6.76757 6.85657 7.01868 7.36753 7.69002 7.75816 7.90165 8.06578 8.31033 8.63411 9.15905 9.78856 10.28160 11.23516 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002902 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.851120 B = 9647.363228 C =11174.570092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.107 3.893 5 N -0.691 5.691 6 C 0.558 3.442 7 O -0.557 6.557 8 C -0.174 4.174 9 C 0.148 3.852 10 N -0.480 5.480 11 C 0.127 3.873 12 C -0.115 4.115 13 C -0.034 4.034 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.122 4.122 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.012 4.012 20 N -0.594 5.594 21 C 0.163 3.837 22 C -0.265 4.265 23 H 0.068 0.932 24 C 0.008 3.992 25 N -0.900 5.900 26 Si 0.901 3.099 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.414 0.586 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.147 0.853 44 H 0.028 0.972 45 H 0.042 0.958 46 H -0.002 1.002 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.060 -1.241 -14.777 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.019 4.019 5 N -0.341 5.341 6 C 0.343 3.657 7 O -0.437 6.437 8 C -0.179 4.179 9 C -0.009 4.009 10 N -0.187 5.187 11 C -0.031 4.031 12 C -0.117 4.117 13 C -0.035 4.035 14 C -0.128 4.128 15 C -0.134 4.134 16 C -0.140 4.140 17 C -0.135 4.135 18 C -0.129 4.129 19 C -0.038 4.038 20 N -0.318 5.318 21 C 0.018 3.982 22 C -0.395 4.395 23 H 0.086 0.914 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.731 3.269 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.253 0.747 36 H 0.186 0.814 37 H 0.176 0.824 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.165 0.835 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.017 0.983 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.133 -1.328 -14.549 17.229 hybrid contribution 0.244 0.034 0.604 0.653 sum 9.377 -1.295 -13.944 16.854 Atomic orbital electron populations 1.22169 0.97394 1.01494 1.00703 1.20656 0.92716 0.95909 0.85874 0.91251 1.22015 0.79407 1.01266 0.99229 1.45781 1.08471 1.57239 1.22593 1.17935 0.86139 0.78626 0.82984 1.90713 1.69654 1.49268 1.34094 1.21047 0.95228 1.04010 0.97605 1.23305 0.89850 0.92563 0.95214 1.67735 1.08088 1.15540 1.27316 1.23077 1.00370 0.91480 0.88167 1.19681 0.93378 1.02134 0.96539 1.18611 0.92910 0.98275 0.93694 1.21317 1.00378 0.97731 0.93395 1.21107 0.94086 0.99346 0.98843 1.21228 0.94783 0.99842 0.98124 1.21086 0.99935 0.98366 0.94121 1.21223 0.92823 0.99585 0.99311 1.21738 0.92409 0.92396 0.97257 1.43951 1.57901 1.09679 1.20219 1.20759 0.93963 0.84424 0.99006 1.19166 1.17035 0.90943 1.12331 0.91449 1.24980 0.97927 0.96088 1.00182 1.70073 1.39290 1.07291 1.37707 0.86399 0.78974 0.78590 0.82939 1.21240 1.21687 1.20798 0.93546 0.92930 0.92365 0.92125 0.92575 0.74722 0.81375 0.82364 0.85449 0.85755 0.86035 0.85774 0.85525 0.83520 0.95330 0.93876 0.98320 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.18 37.16 0.34 -2.19 16 2 C 0.16 2.90 2.87 -67.93 -0.19 2.71 16 3 H 0.07 1.26 7.86 -51.93 -0.41 0.85 16 4 C 0.11 1.93 4.97 -4.04 -0.02 1.91 16 5 N -0.69 -12.92 5.34 -61.24 -0.33 -13.24 16 6 C 0.56 10.47 7.78 -12.33 -0.10 10.37 16 7 O -0.56 -11.54 16.42 5.32 0.09 -11.45 16 8 C -0.17 -2.91 5.89 -104.87 -0.62 -3.53 16 9 C 0.15 2.50 10.71 -17.09 -0.18 2.31 16 10 N -0.48 -7.74 10.33 -12.64 -0.13 -7.87 16 11 C 0.13 1.69 10.59 -17.13 -0.18 1.51 16 12 C -0.12 -1.52 5.89 -104.80 -0.62 -2.13 16 13 C -0.03 -0.39 5.88 -104.89 -0.62 -1.00 16 14 C -0.11 -1.17 9.44 -39.25 -0.37 -1.54 16 15 C -0.12 -1.04 10.03 -39.63 -0.40 -1.43 16 16 C -0.12 -1.00 10.04 -39.52 -0.40 -1.39 16 17 C -0.12 -0.98 10.03 -39.63 -0.40 -1.37 16 18 C -0.11 -1.07 9.44 -39.26 -0.37 -1.44 16 19 C -0.01 -0.18 9.07 -38.53 -0.35 -0.52 16 20 N -0.59 -13.34 2.29 -173.49 -0.40 -13.74 16 21 C 0.16 3.80 8.11 59.85 0.49 4.29 16 22 C -0.27 -6.54 9.33 -15.06 -0.14 -6.68 16 23 H 0.07 1.63 7.81 -52.48 -0.41 1.22 16 24 C 0.01 0.19 5.10 -17.43 -0.09 0.11 16 25 N -0.90 -24.26 10.64 55.49 0.59 -23.67 16 26 Si 0.90 20.72 29.57 -169.99 -5.03 15.69 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.85 6.66 -51.93 -0.35 0.51 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.18 7.84 -51.93 -0.41 0.77 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.41 8.05 5.95 -40.82 -0.24 7.81 16 36 H 0.17 2.91 6.41 -52.49 -0.34 2.58 16 37 H 0.16 1.60 6.21 -52.48 -0.33 1.27 16 38 H 0.13 1.28 6.27 -52.48 -0.33 0.95 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.13 0.98 6.23 -52.48 -0.33 0.66 16 43 H 0.15 2.03 5.99 -52.48 -0.31 1.72 16 44 H 0.03 0.73 7.42 -51.93 -0.39 0.35 16 45 H 0.04 1.10 7.20 -51.93 -0.37 0.72 16 46 H 0.00 -0.03 6.43 -51.93 -0.33 -0.37 16 47 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 385.44 15.07 5.81 5.81 Total: -1.00 -29.56 385.44 -9.82 -39.38 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.21 Total: 9.14 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -4.21 Total: -0.04 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.26 Total: -58.53 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.56 -9.82 -39.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485309818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.579 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds