Wall clock time and date at job start Tue Mar 31 2020 23:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47292 * 2 1 4 4 C 1.53000 * 109.47274 * 240.00102 * 2 1 3 5 5 N 1.46503 * 109.47118 * 185.00095 * 4 2 1 6 6 C 1.34774 * 120.00211 * 180.02562 * 5 4 2 7 7 O 1.21557 * 119.99775 * 359.97438 * 6 5 4 8 8 C 1.47856 * 120.00255 * 180.02562 * 6 5 4 9 9 C 1.39623 * 120.49873 * 359.72707 * 8 6 5 10 10 N 1.31700 * 120.82623 * 179.70145 * 9 8 6 11 11 C 1.31811 * 122.01214 * 0.58428 * 10 9 8 12 12 C 1.39394 * 120.91815 * 359.70240 * 11 10 9 13 13 C 1.48415 * 120.46764 * 179.97438 * 12 11 10 14 14 C 1.39332 * 120.11634 * 179.74800 * 13 12 11 15 15 C 1.38024 * 119.87712 * 179.69834 * 14 13 12 16 16 C 1.38316 * 120.11586 * 0.59778 * 15 14 13 17 17 C 1.38323 * 120.24546 * 359.67468 * 16 15 14 18 18 C 1.38022 * 120.11993 * 0.02562 * 17 16 15 19 19 C 1.39514 * 119.06135 * 0.02562 * 12 11 10 20 20 N 1.46498 * 109.46837 * 119.99895 * 2 1 3 21 21 C 1.46505 * 120.00187 * 60.00427 * 20 2 1 22 22 C 1.36938 * 120.00385 * 239.99682 * 20 2 1 23 23 H 1.08004 * 119.99303 * 21.92059 * 22 20 2 24 24 C 1.38803 * 120.00691 * 201.91970 * 22 20 2 25 25 N 1.31626 * 119.99663 * 12.73338 * 24 22 20 26 26 Si 1.86797 * 120.00290 * 192.73719 * 24 22 20 27 27 H 1.48501 * 109.47398 * 60.00068 * 26 24 22 28 28 H 1.48498 * 109.47329 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47303 * 299.99975 * 26 24 22 30 30 H 1.09000 * 109.46897 * 60.00016 * 1 2 3 31 31 H 1.09004 * 109.47292 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47330 * 299.99977 * 1 2 3 33 33 H 1.09006 * 109.47165 * 304.99732 * 4 2 1 34 34 H 1.08999 * 109.47004 * 65.00195 * 4 2 1 35 35 H 0.96998 * 120.00002 * 359.97438 * 5 4 2 36 36 H 1.08002 * 119.58951 * 359.96974 * 9 8 6 37 37 H 1.08006 * 119.53993 * 179.67771 * 11 10 9 38 38 H 1.08003 * 120.06157 * 359.97438 * 14 13 12 39 39 H 1.07997 * 119.94293 * 180.31605 * 15 14 13 40 40 H 1.08003 * 119.88155 * 179.69904 * 16 15 14 41 41 H 1.08003 * 119.94184 * 179.97438 * 17 16 15 42 42 H 1.08003 * 120.06077 * 180.02562 * 18 17 16 43 43 H 1.08007 * 120.90542 * 179.97438 * 19 12 11 44 44 H 1.08996 * 109.47268 * 94.30986 * 21 20 2 45 45 H 1.08994 * 109.46974 * 214.31137 * 21 20 2 46 46 H 1.08997 * 109.46664 * 334.31039 * 21 20 2 47 47 H 0.97004 * 119.99380 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4282 -2.1911 7 8 3.5687 -1.8842 -3.1420 8 6 5.6467 -1.5348 -2.1316 9 6 6.3518 -1.0106 -1.0465 10 7 7.6638 -1.1071 -0.9840 11 6 8.3680 -1.6859 -1.9362 12 6 7.7445 -2.2307 -3.0576 13 6 8.5472 -2.8796 -4.1240 14 6 7.9160 -3.4264 -5.2393 15 6 8.6677 -4.0232 -6.2312 16 6 10.0443 -4.0899 -6.1135 17 6 10.6756 -3.5536 -5.0057 18 6 9.9341 -2.9491 -4.0109 19 6 6.3554 -2.1564 -3.1637 20 7 2.0182 -0.6906 1.1962 21 6 1.6644 -2.0932 1.4280 22 6 2.8055 -0.0252 2.0976 23 1 2.7850 1.0539 2.1393 24 6 3.6300 -0.7373 2.9578 25 7 3.8493 -2.0183 2.7489 26 14 4.4280 0.1220 4.4117 27 1 3.3738 0.6739 5.3002 28 1 5.2538 -0.8517 5.1700 29 1 5.2903 1.2270 3.9213 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6054 -1.7198 -1.2952 34 1 1.7517 -0.1582 -2.1369 35 1 3.9824 -0.4621 -0.4319 36 1 5.8143 -0.5237 -0.2462 37 1 9.4430 -1.7383 -1.8464 38 1 6.8407 -3.3795 -5.3297 39 1 8.1800 -4.4429 -7.0985 40 1 10.6284 -4.5620 -6.8895 41 1 11.7507 -3.6087 -4.9186 42 1 10.4280 -2.5303 -3.1465 43 1 5.8416 -2.5683 -4.0199 44 1 2.4538 -2.7362 1.0390 45 1 1.5487 -2.2667 2.4979 46 1 0.7273 -2.3202 0.9197 47 1 4.4252 -2.5160 3.3502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485309818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:30 Heat of formation + Delta-G solvation = 32.595484 kcal Electronic energy + Delta-G solvation = -28635.020953 eV Core-core repulsion = 24782.666628 eV Total energy + Delta-G solvation = -3852.354325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.82863 -40.44689 -39.53586 -38.37175 -35.49751 -34.52785 -33.98011 -33.17357 -31.83849 -31.07928 -30.14560 -27.99048 -27.53688 -25.53512 -25.19635 -24.75664 -23.12148 -22.58568 -21.31960 -20.91340 -19.20208 -18.81023 -18.08421 -17.71814 -17.49808 -17.07317 -16.56637 -16.36075 -16.18502 -15.74602 -15.39071 -15.25282 -15.01911 -14.70240 -14.66115 -14.57817 -14.29980 -13.95500 -13.84892 -13.71543 -13.60476 -13.37082 -13.19933 -12.79845 -12.57278 -12.50530 -12.29226 -12.26902 -12.11464 -11.90832 -11.72597 -11.47880 -11.34937 -11.33391 -10.72613 -10.58088 -10.55067 -9.98386 -9.87830 -9.19974 -8.76261 -7.75792 -5.23644 -0.65512 -0.25481 0.48043 0.76451 1.51254 1.53505 1.58274 1.78060 2.19275 2.54595 2.65005 3.03229 3.16158 3.38199 3.42686 3.63924 3.67263 3.68849 3.73094 3.92173 4.04141 4.08699 4.20390 4.31480 4.37307 4.41609 4.57500 4.57820 4.62619 4.71186 4.81625 4.85793 4.88870 4.89858 5.01350 5.10355 5.13870 5.28231 5.32627 5.36826 5.43856 5.55915 5.59054 5.59757 5.60147 5.71435 5.77214 6.05089 6.36744 6.53371 6.72750 7.12517 7.20332 7.91856 8.37017 9.25051 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002902 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.851120 B = 9647.363228 C =11174.570092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 H 0.075 0.925 4 C 0.112 3.888 5 N -0.693 5.693 6 C 0.557 3.443 7 O -0.581 6.581 8 C -0.187 4.187 9 C 0.135 3.865 10 N -0.497 5.497 11 C 0.128 3.872 12 C -0.099 4.099 13 C -0.061 4.061 14 C -0.125 4.125 15 C -0.124 4.124 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.114 4.114 19 C -0.020 4.020 20 N -0.602 5.602 21 C 0.182 3.818 22 C -0.259 4.259 23 H 0.074 0.926 24 C -0.039 4.039 25 N -0.926 5.926 26 Si 0.955 3.045 27 H -0.286 1.286 28 H -0.303 1.303 29 H -0.274 1.274 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.410 0.590 36 H 0.155 0.845 37 H 0.195 0.805 38 H 0.123 0.877 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.151 0.849 44 H -0.002 1.002 45 H 0.015 0.985 46 H 0.023 0.977 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.583 -0.838 -16.476 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.048 3.952 3 H 0.094 0.906 4 C -0.014 4.014 5 N -0.342 5.342 6 C 0.344 3.656 7 O -0.463 6.463 8 C -0.192 4.192 9 C -0.022 4.022 10 N -0.205 5.205 11 C -0.030 4.030 12 C -0.101 4.101 13 C -0.061 4.061 14 C -0.143 4.143 15 C -0.142 4.142 16 C -0.135 4.135 17 C -0.138 4.138 18 C -0.132 4.132 19 C -0.046 4.046 20 N -0.326 5.326 21 C 0.036 3.964 22 C -0.389 4.389 23 H 0.092 0.908 24 C -0.236 4.236 25 N -0.573 5.573 26 Si 0.784 3.216 27 H -0.212 1.212 28 H -0.230 1.230 29 H -0.199 1.199 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.248 0.752 36 H 0.172 0.828 37 H 0.211 0.789 38 H 0.141 0.859 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.017 0.983 45 H 0.034 0.966 46 H 0.042 0.958 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.629 -0.886 -16.264 19.449 hybrid contribution -0.144 -0.130 0.969 0.988 sum 10.485 -1.017 -15.295 18.572 Atomic orbital electron populations 1.22056 0.94911 1.01702 1.02115 1.20863 0.94396 0.95628 0.84283 0.90632 1.21984 0.79042 1.00606 0.99754 1.45851 1.08791 1.57181 1.22415 1.18226 0.87020 0.77923 0.82462 1.90681 1.70377 1.50375 1.34910 1.20902 0.94084 1.05611 0.98632 1.23070 0.90395 0.93602 0.95141 1.67729 1.07714 1.16483 1.28542 1.23639 1.01781 0.90214 0.87355 1.19882 0.92759 1.00690 0.96817 1.18631 0.93737 1.00047 0.93733 1.21449 1.00554 0.98318 0.93946 1.21390 0.94737 0.99044 0.98985 1.21643 0.94626 0.98622 0.98571 1.21464 1.01360 0.97399 0.93534 1.21493 0.92052 0.99319 1.00316 1.21867 0.93353 0.92411 0.96933 1.44080 1.57697 1.09325 1.21462 1.20417 0.94021 0.84740 0.97179 1.19444 1.16089 0.91299 1.12084 0.90804 1.25552 0.99073 0.96576 1.02360 1.70236 1.40339 1.08438 1.38244 0.85536 0.78036 0.77523 0.80460 1.21214 1.23007 1.19948 0.90372 0.93298 0.92708 0.93600 0.90603 0.75205 0.82793 0.78885 0.85920 0.83914 0.83307 0.83029 0.83835 0.83105 0.98333 0.96629 0.95835 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 9.18 71.98 0.66 -3.79 16 2 C 0.16 5.60 2.87 44.99 0.13 5.73 16 3 H 0.08 2.64 7.86 -2.38 -0.02 2.62 16 4 C 0.11 4.00 4.97 86.38 0.43 4.43 16 5 N -0.69 -26.61 5.34 -465.95 -2.49 -29.10 16 6 C 0.56 21.62 7.78 86.79 0.68 22.29 16 7 O -0.58 -24.66 16.42 -3.90 -0.06 -24.72 16 8 C -0.19 -6.52 5.89 -20.02 -0.12 -6.64 16 9 C 0.14 4.75 10.71 85.05 0.91 5.66 16 10 N -0.50 -16.19 10.33 -193.91 -2.00 -18.19 16 11 C 0.13 3.30 10.59 84.97 0.90 4.20 16 12 C -0.10 -2.58 5.89 -19.98 -0.12 -2.69 16 13 C -0.06 -1.30 5.88 -20.04 -0.12 -1.42 16 14 C -0.12 -2.52 9.44 22.48 0.21 -2.31 16 15 C -0.12 -1.94 10.03 22.24 0.22 -1.72 16 16 C -0.12 -1.52 10.04 22.31 0.22 -1.29 16 17 C -0.12 -1.58 10.03 22.24 0.22 -1.36 16 18 C -0.11 -1.89 9.44 22.48 0.21 -1.68 16 19 C -0.02 -0.59 9.07 22.95 0.21 -0.38 16 20 N -0.60 -27.13 2.29 -702.79 -1.61 -28.74 16 21 C 0.18 8.65 8.11 127.77 1.04 9.68 16 22 C -0.26 -12.81 9.33 84.03 0.78 -12.03 16 23 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 24 C -0.04 -2.05 5.10 84.86 0.43 -1.62 16 25 N -0.93 -51.68 10.64 21.65 0.23 -51.45 16 26 Si 0.95 43.22 29.57 68.60 2.03 45.24 16 27 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 29 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.50 6.66 -2.38 -0.02 1.48 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.78 7.84 -2.38 -0.02 1.76 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.41 16.55 5.95 -92.71 -0.55 16.00 16 36 H 0.15 5.71 6.41 -2.91 -0.02 5.69 16 37 H 0.19 3.44 6.21 -2.91 -0.02 3.42 16 38 H 0.12 2.48 6.27 -2.91 -0.02 2.46 16 39 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 42 H 0.14 1.76 6.23 -2.91 -0.02 1.75 16 43 H 0.15 4.33 5.99 -2.91 -0.02 4.31 16 44 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 45 H 0.01 0.79 7.20 -2.39 -0.02 0.78 16 46 H 0.02 0.98 6.43 -2.39 -0.02 0.96 16 47 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -64.97 385.44 3.45 -61.52 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.45 Total: 30.40 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.91 Total: 15.05 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -5.87 Total: -127.48 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.06 Total: -24.72 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -64.97 3.45 -61.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485309818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.111 kcal (2) G-P(sol) polarization free energy of solvation -64.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds