Wall clock time and date at job start Tue Mar 31 2020 22:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47153 * 2 1 4 4 N 1.46494 * 109.47405 * 240.00069 * 2 1 3 5 5 C 1.34774 * 120.00511 * 84.99753 * 4 2 1 6 6 O 1.21283 * 119.99693 * 0.02562 * 5 4 2 7 7 C 1.50694 * 120.00403 * 179.72784 * 5 4 2 8 8 N 1.46505 * 109.47513 * 180.27877 * 7 5 4 9 9 C 1.36367 * 125.95901 * 269.69344 * 8 7 5 10 10 O 1.35626 * 125.99346 * 0.02731 * 9 8 7 11 11 N 1.30908 * 108.01943 * 179.88342 * 9 8 7 12 12 N 1.40113 * 107.94163 * 0.36837 * 11 9 8 13 13 C 1.30900 * 107.93734 * 359.76657 * 12 11 9 14 14 O 1.35631 * 125.98852 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46945 * 119.99782 * 2 1 3 16 16 C 1.53041 * 109.45955 * 60.06989 * 15 2 1 17 17 C 1.53195 * 109.31220 * 178.61403 * 16 15 2 18 18 N 1.46920 * 108.77629 * 54.63319 * 17 16 15 19 19 C 1.36938 * 120.63250 * 126.41045 * 18 17 16 20 20 H 1.07998 * 119.99731 * 331.81745 * 19 18 17 21 21 C 1.38809 * 120.00063 * 151.80769 * 19 18 17 22 22 N 1.31620 * 120.00203 * 343.08670 * 21 19 18 23 23 Si 1.86806 * 119.99800 * 163.08222 * 21 19 18 24 24 H 1.48503 * 109.46784 * 90.00367 * 23 21 19 25 25 H 1.48498 * 109.46924 * 210.00084 * 23 21 19 26 26 H 1.48494 * 109.47169 * 330.00566 * 23 21 19 27 27 C 1.46930 * 118.73980 * 306.39192 * 18 17 16 28 28 C 1.53041 * 109.46227 * 300.00210 * 15 2 1 29 29 H 1.09002 * 109.47420 * 300.00122 * 1 2 3 30 30 H 1.09004 * 109.46669 * 59.99842 * 1 2 3 31 31 H 1.08995 * 109.47308 * 179.97438 * 1 2 3 32 32 H 0.97004 * 120.00189 * 265.00017 * 4 2 1 33 33 H 1.09005 * 109.46823 * 300.27320 * 7 5 4 34 34 H 1.08996 * 109.47481 * 60.27481 * 7 5 4 35 35 H 0.96705 * 113.99844 * 89.99841 * 10 9 8 36 36 H 0.96700 * 114.00280 * 270.02486 * 14 13 12 37 37 H 1.09008 * 109.46136 * 180.02562 * 15 2 1 38 38 H 1.08993 * 109.49589 * 298.56339 * 16 15 2 39 39 H 1.08998 * 109.49645 * 58.66533 * 16 15 2 40 40 H 1.08998 * 109.58523 * 294.84418 * 17 16 15 41 41 H 1.09001 * 109.70408 * 174.49554 * 17 16 15 42 42 H 0.97003 * 119.99581 * 179.97438 * 22 21 19 43 43 H 1.08995 * 109.58699 * 293.82096 * 27 18 17 44 44 H 1.09007 * 109.58659 * 173.39312 * 27 18 17 45 45 H 1.09009 * 109.49538 * 301.33437 * 28 15 2 46 46 H 1.08999 * 109.49778 * 61.39931 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1586 -2.4115 7 6 2.6553 -0.7272 -3.5860 8 7 2.7097 0.2154 -4.7062 9 6 1.7061 0.4599 -5.5965 10 8 0.4831 -0.1263 -5.5996 11 7 2.1289 1.3620 -6.4457 12 7 3.4430 1.7007 -6.0970 13 6 3.7748 0.9973 -5.0440 14 8 4.9687 1.0384 -4.4019 15 6 2.0399 -0.7212 1.2493 16 6 1.5311 -2.1645 1.2482 17 6 2.0719 -2.8934 2.4823 18 7 1.7085 -2.1263 3.6816 19 6 1.0453 -2.7258 4.7189 20 1 0.3979 -3.5694 4.5302 21 6 1.2053 -2.2494 6.0128 22 7 2.2194 -1.4624 6.3036 23 14 -0.0188 -2.7251 7.3413 24 1 0.4354 -3.9711 8.0095 25 1 -0.1122 -1.6323 8.3424 26 1 -1.3523 -2.9501 6.7280 27 6 2.0705 -0.7038 3.7469 28 6 1.5296 0.0004 2.4987 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.2491 -1.6317 -1.1526 33 1 3.6538 -1.1193 -3.3924 34 1 1.9842 -1.5491 -3.8350 35 1 -0.1802 0.3446 -5.0767 36 1 5.6195 0.4085 -4.7407 37 1 3.1300 -0.7207 1.2494 38 1 0.4414 -2.1661 1.2732 39 1 1.8755 -2.6710 0.3466 40 1 3.1569 -2.9722 2.4139 41 1 1.6361 -3.8908 2.5405 42 1 2.3310 -1.1292 7.2078 43 1 3.1553 -0.6041 3.7816 44 1 1.6315 -0.2556 4.6384 45 1 1.8731 1.0349 2.4871 46 1 0.4399 -0.0210 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486450757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:24 Heat of formation + Delta-G solvation = -33.154768 kcal Electronic energy + Delta-G solvation = -30063.414476 eV Core-core repulsion = 25797.359743 eV Total energy + Delta-G solvation = -4266.054733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.38110 -41.12269 -39.51653 -39.15407 -38.06046 -36.89119 -35.37043 -34.52065 -32.89148 -31.46879 -30.69979 -30.54958 -28.82005 -27.13079 -24.98389 -23.97163 -23.87698 -23.21993 -22.38927 -21.60461 -20.23803 -19.85924 -19.73492 -18.76992 -18.45806 -17.92193 -17.34521 -16.97266 -16.54049 -16.42494 -16.24581 -15.70370 -15.63261 -15.35203 -15.10458 -14.68894 -14.57734 -14.20859 -14.08824 -13.91882 -13.76148 -13.38275 -13.36409 -13.03304 -12.96659 -12.90551 -12.61727 -12.54715 -12.44519 -12.15267 -11.96510 -11.82746 -11.65783 -11.60071 -11.57991 -11.17375 -10.96333 -10.74689 -10.55550 -10.51096 -10.17522 -8.64825 -7.86333 -5.30861 0.38935 0.72805 1.13014 1.42463 1.45982 1.48428 1.57016 2.02274 2.21556 2.51932 2.84737 3.28731 3.47598 3.54198 3.70822 3.82956 3.88483 4.05696 4.06760 4.16098 4.26038 4.38093 4.43051 4.59764 4.62491 4.67192 4.75159 4.79336 4.93892 4.97125 5.05185 5.16265 5.22950 5.24475 5.29926 5.33689 5.46098 5.46766 5.59716 5.68763 5.81858 6.19564 6.38605 6.41245 6.48060 6.78023 7.10864 7.17188 7.90426 8.40497 9.19681 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029373 B = 0.002165 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.038778 B =12930.209314 C =13221.809315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 H 0.065 0.935 4 N -0.699 5.699 5 C 0.497 3.503 6 O -0.579 6.579 7 C 0.083 3.917 8 N -0.494 5.494 9 C 0.424 3.576 10 O -0.433 6.433 11 N -0.339 5.339 12 N -0.342 5.342 13 C 0.427 3.573 14 O -0.436 6.436 15 C -0.074 4.074 16 C -0.115 4.115 17 C 0.138 3.862 18 N -0.610 5.610 19 C -0.257 4.257 20 H 0.068 0.932 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.962 3.038 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.270 1.270 27 C 0.177 3.823 28 C -0.123 4.123 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.418 0.582 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.432 0.568 36 H 0.437 0.563 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.013 0.987 41 H 0.054 0.946 42 H 0.248 0.752 43 H -0.008 1.008 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.994 -3.185 -21.950 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.083 0.917 4 N -0.352 5.352 5 C 0.283 3.717 6 O -0.458 6.458 7 C -0.043 4.043 8 N -0.214 5.214 9 C 0.113 3.887 10 O -0.236 6.236 11 N -0.183 5.183 12 N -0.187 5.187 13 C 0.116 3.884 14 O -0.240 6.240 15 C -0.093 4.093 16 C -0.153 4.153 17 C 0.012 3.988 18 N -0.334 5.334 19 C -0.388 4.388 20 H 0.085 0.915 21 C -0.249 4.249 22 N -0.583 5.583 23 Si 0.791 3.209 24 H -0.212 1.212 25 H -0.223 1.223 26 H -0.195 1.195 27 C 0.052 3.948 28 C -0.163 4.163 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.257 0.743 33 H 0.183 0.817 34 H 0.184 0.816 35 H 0.294 0.706 36 H 0.300 0.700 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.010 0.990 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.893 -1.299 -23.048 23.102 hybrid contribution -0.296 -1.194 2.730 2.995 sum 0.597 -2.493 -20.318 20.479 Atomic orbital electron populations 1.22159 0.94713 1.02935 1.01653 1.20786 0.94447 0.95946 0.83360 0.91707 1.45931 1.65925 1.14927 1.08447 1.21159 0.77728 0.87164 0.85674 1.90794 1.51740 1.17837 1.85432 1.22112 1.09394 0.91171 0.81598 1.46634 1.13225 1.35947 1.25576 1.21311 0.86098 0.92891 0.88414 1.84872 1.14062 1.50941 1.73702 1.78235 1.03636 1.12872 1.23577 1.78236 1.05378 1.22671 1.12367 1.21306 0.85497 0.90546 0.91052 1.85000 1.17563 1.63710 1.57710 1.21162 0.99909 0.95727 0.92511 1.21983 1.01007 0.94344 0.97999 1.21105 0.96249 0.94606 0.86798 1.44316 1.66921 1.05761 1.16410 1.19500 1.18807 1.14011 0.86446 0.91464 1.25772 0.98700 1.01147 0.99232 1.70181 1.29711 1.39171 1.19237 0.85358 0.79600 0.76900 0.79091 1.21220 1.22263 1.19454 1.20544 0.94714 0.84030 0.95562 1.22054 1.00691 0.98250 0.95269 0.92033 0.93152 0.90846 0.74277 0.81674 0.81586 0.70607 0.69954 0.91442 0.91787 0.88976 0.96874 0.92730 0.94288 0.98953 0.93329 0.92366 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 8.78 71.98 0.63 -2.64 16 2 C 0.16 3.36 2.40 44.99 0.11 3.47 16 3 H 0.06 1.70 7.58 -2.38 -0.02 1.68 16 4 N -0.70 -9.57 5.00 -442.55 -2.21 -11.78 16 5 C 0.50 7.83 7.86 87.66 0.69 8.52 16 6 O -0.58 -15.55 16.09 -3.04 -0.05 -15.60 16 7 C 0.08 0.59 6.49 85.63 0.56 1.15 16 8 N -0.49 -7.71 2.25 -759.28 -1.71 -9.42 16 9 C 0.42 8.18 9.15 179.72 1.65 9.82 16 10 O -0.43 -5.46 13.57 -89.38 -1.21 -6.67 16 11 N -0.34 -9.06 12.72 -173.66 -2.21 -11.27 16 12 N -0.34 -9.18 12.72 -173.66 -2.21 -11.39 16 13 C 0.43 8.33 9.15 179.72 1.65 9.97 16 14 O -0.44 -5.69 13.58 -89.44 -1.21 -6.90 16 15 C -0.07 -1.88 2.14 -10.77 -0.02 -1.90 16 16 C -0.11 -2.77 4.81 30.67 0.15 -2.62 16 17 C 0.14 4.85 6.52 86.36 0.56 5.42 16 18 N -0.61 -28.44 2.99 -699.10 -2.09 -30.53 16 19 C -0.26 -13.49 9.58 84.03 0.81 -12.68 16 20 H 0.07 3.41 7.88 -2.91 -0.02 3.39 16 21 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 22 N -0.94 -54.47 11.20 21.65 0.24 -54.23 16 23 Si 0.96 43.73 29.59 68.60 2.03 45.76 16 24 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 C 0.18 8.09 5.30 86.36 0.46 8.55 16 28 C -0.12 -4.14 4.97 30.67 0.15 -3.99 16 29 H 0.06 1.44 6.46 -2.39 -0.02 1.43 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.38 6.46 -2.39 -0.02 1.36 16 32 H 0.42 3.04 6.84 -92.71 -0.63 2.40 16 33 H 0.17 -0.04 8.14 -2.38 -0.02 -0.06 16 34 H 0.17 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.43 2.25 9.06 -74.05 -0.67 1.58 16 36 H 0.44 -0.09 9.06 -74.06 -0.67 -0.76 16 37 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.06 1.64 6.51 -2.39 -0.02 1.62 16 39 H 0.09 1.37 6.46 -2.39 -0.02 1.36 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 42 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 43 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 44 H 0.05 2.58 6.06 -2.38 -0.01 2.57 16 45 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 46 H 0.06 2.05 6.51 -2.39 -0.02 2.03 16 Total: -1.00 -85.18 375.24 -3.75 -88.93 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -0.91 Total: 2.52 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 7.80 Total: 20.58 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -10.19 Total: -128.63 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -2.48 Total: -29.17 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -85.18 -3.75 -88.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486450757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.776 kcal (2) G-P(sol) polarization free energy of solvation -85.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds