Wall clock time and date at job start Tue Mar 31 2020 22:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47392 * 240.00323 * 2 1 3 5 5 C 1.53001 * 109.47459 * 174.99750 * 4 2 1 6 6 N 1.46506 * 109.46948 * 180.02562 * 5 4 2 7 7 C 1.36939 * 119.99358 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00453 * 0.02562 * 7 6 5 9 9 C 1.38816 * 119.99464 * 179.97438 * 7 6 5 10 10 N 1.31625 * 120.00106 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99830 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47011 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46735 * 120.00486 * 11 9 7 14 14 H 1.48504 * 109.47074 * 240.00370 * 11 9 7 15 15 N 1.46501 * 109.47550 * 120.00155 * 2 1 3 16 16 C 1.34776 * 119.99855 * 274.99912 * 15 2 1 17 17 O 1.21562 * 120.00086 * 0.02562 * 16 15 2 18 18 C 1.47695 * 119.99670 * 179.97438 * 16 15 2 19 19 C 1.39461 * 120.20663 * 336.27457 * 18 16 15 20 20 C 1.37983 * 119.96863 * 179.97438 * 19 18 16 21 21 C 1.38486 * 120.39404 * 0.02562 * 20 19 18 22 22 C 1.38070 * 120.42505 * 359.72190 * 21 20 19 23 23 C 1.39176 * 120.01909 * 0.55562 * 22 21 20 24 24 C 1.48224 * 120.20038 * 179.71743 * 23 22 21 25 25 C 1.39822 * 120.91380 * 303.20250 * 24 23 22 26 26 C 1.37998 * 119.01260 * 180.02562 * 25 24 23 27 27 N 1.31913 * 120.88711 * 0.28103 * 26 25 24 28 28 C 1.31909 * 122.02500 * 359.42212 * 27 26 25 29 29 C 1.38003 * 120.88578 * 0.57858 * 28 27 26 30 30 H 1.08988 * 109.47460 * 59.99799 * 1 2 3 31 31 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46871 * 299.99329 * 1 2 3 33 33 H 1.08995 * 109.46947 * 295.00046 * 4 2 1 34 34 H 1.09010 * 109.47166 * 54.99683 * 4 2 1 35 35 H 1.09001 * 109.46877 * 299.99507 * 5 4 2 36 36 H 1.08996 * 109.46945 * 59.99738 * 5 4 2 37 37 H 0.96993 * 120.00242 * 0.02562 * 6 5 4 38 38 H 0.96999 * 119.99637 * 179.97438 * 10 9 7 39 39 H 0.96996 * 119.99835 * 95.00006 * 15 2 1 40 40 H 1.07997 * 120.02171 * 0.02562 * 19 18 16 41 41 H 1.07994 * 119.80437 * 179.97438 * 20 19 18 42 42 H 1.08010 * 119.78808 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.99374 * 180.30087 * 22 21 20 44 44 H 1.07997 * 120.49812 * 0.02562 * 25 24 23 45 45 H 1.07995 * 119.55713 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.55742 * 180.27427 * 28 27 26 47 47 H 1.08003 * 120.48883 * 179.70374 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 7 4.0531 -1.3032 -2.5103 7 6 5.3952 -1.3389 -2.7803 8 1 6.0937 -0.8588 -2.1110 9 6 5.8579 -1.9932 -3.9138 10 7 5.0066 -2.5788 -4.7293 11 14 7.6886 -2.0426 -4.2818 12 1 8.4271 -1.3156 -3.2181 13 1 8.1467 -3.4545 -4.3254 14 1 7.9473 -1.3974 -5.5941 15 7 2.0184 -0.6906 1.1961 16 6 2.1472 -0.0183 2.3571 17 8 1.8576 1.1611 2.4118 18 6 2.6391 -0.7147 3.5631 19 6 2.5076 -2.0984 3.6769 20 6 2.9694 -2.7441 4.8055 21 6 3.5638 -2.0261 5.8297 22 6 3.7070 -0.6564 5.7318 23 6 3.2423 0.0134 4.6038 24 6 3.3882 1.4846 4.4972 25 6 2.8563 2.3318 5.4741 26 6 3.0147 3.6957 5.3354 27 7 3.6521 4.2013 4.2970 28 6 4.1736 3.4374 3.3565 29 6 4.0611 2.0632 3.4167 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.7517 -1.7714 -1.2057 34 1 1.6054 -0.2616 -2.1371 35 1 3.8532 0.4371 -1.3575 36 1 3.9995 -1.0726 -0.4261 37 1 3.4258 -1.7341 -3.1116 38 1 5.3300 -3.0357 -5.5215 39 1 2.2491 -1.6317 1.1525 40 1 2.0454 -2.6645 2.8818 41 1 2.8659 -3.8157 4.8911 42 1 3.9222 -2.5416 6.7086 43 1 4.1760 -0.1039 6.5325 44 1 2.3294 1.9250 6.3245 45 1 2.6070 4.3582 6.0845 46 1 4.6912 3.8936 2.5257 47 1 4.4864 1.4441 2.6407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497216946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:17 Heat of formation + Delta-G solvation = 33.001696 kcal Electronic energy + Delta-G solvation = -28704.286369 eV Core-core repulsion = 24851.949658 eV Total energy + Delta-G solvation = -3852.336710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.86474 -39.63588 -38.58533 -36.52155 -34.45523 -33.66493 -32.48056 -31.41771 -31.15990 -30.27063 -29.91270 -27.90241 -24.86328 -24.04308 -23.90702 -23.22696 -22.04336 -21.47409 -20.76077 -20.42840 -18.24629 -17.26917 -17.01957 -16.39190 -16.24901 -15.90069 -15.44130 -15.31796 -14.90319 -14.81296 -14.51161 -13.97238 -13.83435 -13.73443 -13.64037 -13.48873 -13.43504 -13.31902 -12.95685 -12.85684 -12.37761 -12.09107 -11.89254 -11.76312 -11.57134 -11.24172 -11.05978 -10.83081 -10.68712 -10.58781 -10.31732 -10.03732 -9.73194 -9.63975 -9.52001 -9.37205 -9.18783 -8.96662 -8.88360 -8.83120 -6.95281 -5.79519 -3.08333 0.45687 0.80361 1.16643 1.42313 2.71408 3.11004 3.41408 3.47382 3.49467 3.51503 3.82098 4.16468 4.44249 4.47513 4.49311 4.55930 4.65432 4.83709 4.91382 4.97519 5.03391 5.06772 5.16651 5.21048 5.31625 5.35459 5.51133 5.52618 5.56329 5.68836 5.72486 5.73531 5.84285 5.89182 5.91941 5.99663 6.01972 6.07234 6.19781 6.24212 6.25174 6.30214 6.46620 6.51453 6.66725 6.77373 6.82769 7.49202 7.68070 7.97023 8.18214 8.39484 9.50738 10.08102 10.42733 11.43438 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.002855 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.124435 B = 9804.810646 C =10036.996457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.090 0.910 4 C -0.135 4.135 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.712 5.712 16 C 0.553 3.447 17 O -0.525 6.525 18 C -0.114 4.114 19 C -0.085 4.085 20 C -0.119 4.119 21 C -0.097 4.097 22 C -0.110 4.110 23 C -0.003 4.003 24 C 0.009 3.991 25 C -0.159 4.159 26 C 0.094 3.906 27 N -0.486 5.486 28 C 0.101 3.899 29 C -0.124 4.124 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.401 0.599 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 2.645 23.742 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.108 0.892 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.737 3.263 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.364 5.364 16 C 0.339 3.661 17 O -0.402 6.402 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.137 4.137 21 C -0.115 4.115 22 C -0.128 4.128 23 C -0.004 4.004 24 C 0.001 3.999 25 C -0.179 4.179 26 C -0.063 4.063 27 N -0.195 5.195 28 C -0.055 4.055 29 C -0.144 4.144 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.236 0.764 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.170 0.830 46 H 0.172 0.828 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.060 4.448 23.680 25.406 hybrid contribution 0.760 -1.818 -0.554 2.047 sum -7.300 2.630 23.126 24.393 Atomic orbital electron populations 1.22155 0.95372 1.01991 1.02358 1.20998 0.93581 0.97717 0.83517 0.89236 1.22073 0.98106 1.00780 0.96383 1.20625 0.90317 0.95624 0.90734 1.42372 1.05402 1.65006 1.25028 1.19271 0.83820 1.28425 1.05492 0.91203 1.24745 0.97728 1.00882 0.97660 1.69670 1.32709 1.40764 1.15100 0.86125 0.85064 0.77233 0.77843 1.20536 1.21844 1.21799 1.46076 1.66613 1.14192 1.09483 1.18163 0.78201 0.86653 0.83086 1.90831 1.49527 1.14991 1.84816 1.20058 1.02717 0.93800 0.95194 1.21326 0.98060 0.92692 0.98311 1.21206 0.98462 1.00466 0.93607 1.21283 0.97483 0.93853 0.98860 1.21181 1.00077 0.94594 0.96982 1.18686 0.96778 0.91640 0.93291 1.18853 0.95329 0.91495 0.94226 1.22045 1.01495 0.94657 0.99698 1.22556 0.95569 0.92796 0.95391 1.67580 1.08852 1.40907 1.02201 1.22586 0.96123 0.90211 0.96572 1.22059 0.98646 0.96556 0.97115 0.91456 0.92542 0.92426 0.91377 0.90151 0.96436 0.96454 0.78322 0.93554 0.76415 0.85016 0.85084 0.85198 0.85114 0.85156 0.83017 0.82823 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.48 37.16 0.35 -1.50 16 2 C 0.15 1.92 2.57 -67.93 -0.17 1.75 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 4 C -0.14 -2.02 4.87 -26.73 -0.13 -2.15 16 5 C 0.15 3.02 6.15 -4.04 -0.02 3.00 16 6 N -0.73 -18.38 5.60 -59.90 -0.34 -18.71 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 11 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 15 N -0.71 -8.70 4.45 -54.80 -0.24 -8.95 16 16 C 0.55 7.40 6.86 -12.40 -0.09 7.31 16 17 O -0.52 -8.46 13.13 5.31 0.07 -8.39 16 18 C -0.11 -1.32 5.86 -104.69 -0.61 -1.93 16 19 C -0.09 -0.78 9.37 -39.22 -0.37 -1.15 16 20 C -0.12 -0.91 10.02 -39.58 -0.40 -1.30 16 21 C -0.10 -0.71 10.03 -39.55 -0.40 -1.10 16 22 C -0.11 -0.96 9.64 -39.30 -0.38 -1.33 16 23 C 0.00 -0.03 5.47 -104.55 -0.57 -0.60 16 24 C 0.01 0.11 4.10 -104.61 -0.43 -0.32 16 25 C -0.16 -1.73 9.76 -39.08 -0.38 -2.11 16 26 C 0.09 1.06 11.17 -17.60 -0.20 0.87 16 27 N -0.49 -6.57 10.35 -13.34 -0.14 -6.70 16 28 C 0.10 1.33 11.17 -17.60 -0.20 1.13 16 29 C -0.12 -1.64 7.40 -39.07 -0.29 -1.93 16 30 H 0.07 0.72 8.14 -51.94 -0.42 0.30 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.22 8.14 -51.92 -0.42 0.79 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 37 H 0.38 10.02 7.67 -40.82 -0.31 9.71 16 38 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.40 4.30 7.19 -40.82 -0.29 4.01 16 40 H 0.13 0.97 7.02 -52.49 -0.37 0.60 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 46 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 47 H 0.13 1.71 7.84 -52.48 -0.41 1.30 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -34.28 395.28 -10.32 -44.60 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -6.80 Total: 10.94 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -4.53 Total: -8.72 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.01 Total: -61.73 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.07 Total: -8.39 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.28 -10.32 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497216946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.600 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds