Wall clock time and date at job start Tue Mar 31 2020 22:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47210 * 2 1 4 4 C 1.53000 * 109.47392 * 240.00323 * 2 1 3 5 5 C 1.53001 * 109.47459 * 174.99750 * 4 2 1 6 6 N 1.46506 * 109.46948 * 180.02562 * 5 4 2 7 7 C 1.36939 * 119.99358 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00453 * 0.02562 * 7 6 5 9 9 C 1.38816 * 119.99464 * 179.97438 * 7 6 5 10 10 N 1.31625 * 120.00106 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99830 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47011 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46735 * 120.00486 * 11 9 7 14 14 H 1.48504 * 109.47074 * 240.00370 * 11 9 7 15 15 N 1.46501 * 109.47550 * 120.00155 * 2 1 3 16 16 C 1.34776 * 119.99855 * 274.99912 * 15 2 1 17 17 O 1.21562 * 120.00086 * 0.02562 * 16 15 2 18 18 C 1.47695 * 119.99670 * 179.97438 * 16 15 2 19 19 C 1.39461 * 120.20663 * 336.27457 * 18 16 15 20 20 C 1.37983 * 119.96863 * 179.97438 * 19 18 16 21 21 C 1.38486 * 120.39404 * 0.02562 * 20 19 18 22 22 C 1.38070 * 120.42505 * 359.72190 * 21 20 19 23 23 C 1.39176 * 120.01909 * 0.55562 * 22 21 20 24 24 C 1.48224 * 120.20038 * 179.71743 * 23 22 21 25 25 C 1.39822 * 120.91380 * 303.20250 * 24 23 22 26 26 C 1.37998 * 119.01260 * 180.02562 * 25 24 23 27 27 N 1.31913 * 120.88711 * 0.28103 * 26 25 24 28 28 C 1.31909 * 122.02500 * 359.42212 * 27 26 25 29 29 C 1.38003 * 120.88578 * 0.57858 * 28 27 26 30 30 H 1.08988 * 109.47460 * 59.99799 * 1 2 3 31 31 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46871 * 299.99329 * 1 2 3 33 33 H 1.08995 * 109.46947 * 295.00046 * 4 2 1 34 34 H 1.09010 * 109.47166 * 54.99683 * 4 2 1 35 35 H 1.09001 * 109.46877 * 299.99507 * 5 4 2 36 36 H 1.08996 * 109.46945 * 59.99738 * 5 4 2 37 37 H 0.96993 * 120.00242 * 0.02562 * 6 5 4 38 38 H 0.96999 * 119.99637 * 179.97438 * 10 9 7 39 39 H 0.96996 * 119.99835 * 95.00006 * 15 2 1 40 40 H 1.07997 * 120.02171 * 0.02562 * 19 18 16 41 41 H 1.07994 * 119.80437 * 179.97438 * 20 19 18 42 42 H 1.08010 * 119.78808 * 180.02562 * 21 20 19 43 43 H 1.07999 * 119.99374 * 180.30087 * 22 21 20 44 44 H 1.07997 * 120.49812 * 0.02562 * 25 24 23 45 45 H 1.07995 * 119.55713 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.55742 * 180.27427 * 28 27 26 47 47 H 1.08003 * 120.48883 * 179.70374 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 7 4.0531 -1.3032 -2.5103 7 6 5.3952 -1.3389 -2.7803 8 1 6.0937 -0.8588 -2.1110 9 6 5.8579 -1.9932 -3.9138 10 7 5.0066 -2.5788 -4.7293 11 14 7.6886 -2.0426 -4.2818 12 1 8.4271 -1.3156 -3.2181 13 1 8.1467 -3.4545 -4.3254 14 1 7.9473 -1.3974 -5.5941 15 7 2.0184 -0.6906 1.1961 16 6 2.1472 -0.0183 2.3571 17 8 1.8576 1.1611 2.4118 18 6 2.6391 -0.7147 3.5631 19 6 2.5076 -2.0984 3.6769 20 6 2.9694 -2.7441 4.8055 21 6 3.5638 -2.0261 5.8297 22 6 3.7070 -0.6564 5.7318 23 6 3.2423 0.0134 4.6038 24 6 3.3882 1.4846 4.4972 25 6 2.8563 2.3318 5.4741 26 6 3.0147 3.6957 5.3354 27 7 3.6521 4.2013 4.2970 28 6 4.1736 3.4374 3.3565 29 6 4.0611 2.0632 3.4167 30 1 -0.3634 0.5138 -0.8898 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.7517 -1.7714 -1.2057 34 1 1.6054 -0.2616 -2.1371 35 1 3.8532 0.4371 -1.3575 36 1 3.9995 -1.0726 -0.4261 37 1 3.4258 -1.7341 -3.1116 38 1 5.3300 -3.0357 -5.5215 39 1 2.2491 -1.6317 1.1525 40 1 2.0454 -2.6645 2.8818 41 1 2.8659 -3.8157 4.8911 42 1 3.9222 -2.5416 6.7086 43 1 4.1760 -0.1039 6.5325 44 1 2.3294 1.9250 6.3245 45 1 2.6070 4.3582 6.0845 46 1 4.6912 3.8936 2.5257 47 1 4.4864 1.4441 2.6407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497216946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:16 Heat of formation + Delta-G solvation = 12.009812 kcal Electronic energy + Delta-G solvation = -28705.196645 eV Core-core repulsion = 24851.949658 eV Total energy + Delta-G solvation = -3853.246987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.74424 -40.59780 -39.39557 -37.81281 -36.14756 -34.55142 -33.73614 -32.84361 -32.14547 -31.26207 -30.73128 -29.43168 -26.02697 -25.49516 -24.76961 -24.17053 -23.31720 -22.65487 -21.79193 -21.43677 -19.37005 -18.88191 -18.03439 -17.39559 -17.22162 -16.79850 -16.69017 -16.22379 -16.12875 -15.75532 -15.65511 -15.48432 -15.13036 -15.03959 -14.71566 -14.60493 -14.41832 -14.31181 -14.19748 -13.79796 -13.45743 -13.12374 -12.92738 -12.90834 -12.75904 -12.61171 -12.41883 -12.25445 -12.21385 -12.01575 -11.95429 -11.66290 -11.27220 -10.97892 -10.56527 -10.45773 -10.23702 -10.00429 -9.89340 -9.63391 -9.02969 -7.98121 -5.27129 -0.32000 0.10107 0.25052 0.59896 1.46010 1.46751 1.56797 1.82315 2.14975 2.53588 2.74906 2.91985 3.35707 3.38289 3.55822 3.58361 3.71610 3.85307 3.98939 4.03622 4.08720 4.13536 4.17318 4.24568 4.34878 4.40643 4.43880 4.53320 4.62198 4.62927 4.69585 4.74061 4.82629 4.85467 4.87382 4.97539 5.08533 5.16248 5.19041 5.23779 5.30285 5.31726 5.42735 5.44696 5.46649 5.53710 5.77671 5.87126 6.24706 6.51584 7.03989 7.19274 7.31336 8.05829 8.30279 9.25338 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.002855 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.124435 B = 9804.810646 C =10036.996457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.155 3.845 3 H 0.067 0.933 4 C -0.118 4.118 5 C 0.156 3.844 6 N -0.745 5.745 7 C -0.248 4.248 8 H 0.070 0.930 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.971 3.029 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.292 1.292 15 N -0.707 5.707 16 C 0.551 3.449 17 O -0.559 6.559 18 C -0.138 4.138 19 C -0.089 4.089 20 C -0.117 4.117 21 C -0.088 4.088 22 C -0.111 4.111 23 C -0.024 4.024 24 C 0.004 3.996 25 C -0.159 4.159 26 C 0.089 3.911 27 N -0.511 5.511 28 C 0.085 3.915 29 C -0.141 4.141 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.005 0.995 36 H 0.022 0.978 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.409 0.591 40 H 0.146 0.854 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.148 0.852 44 H 0.158 0.842 45 H 0.183 0.817 46 H 0.159 0.841 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.264 1.138 26.039 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.086 0.914 4 C -0.157 4.157 5 C 0.029 3.971 6 N -0.388 5.388 7 C -0.379 4.379 8 H 0.088 0.912 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.800 3.200 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.219 1.219 15 N -0.359 5.359 16 C 0.339 3.661 17 O -0.439 6.439 18 C -0.142 4.142 19 C -0.108 4.108 20 C -0.135 4.135 21 C -0.106 4.106 22 C -0.129 4.129 23 C -0.025 4.025 24 C -0.004 4.004 25 C -0.178 4.178 26 C -0.068 4.068 27 N -0.220 5.220 28 C -0.071 4.071 29 C -0.161 4.161 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.023 0.977 36 H 0.040 0.960 37 H 0.208 0.792 38 H 0.061 0.939 39 H 0.246 0.754 40 H 0.163 0.837 41 H 0.178 0.822 42 H 0.181 0.819 43 H 0.166 0.834 44 H 0.176 0.824 45 H 0.200 0.800 46 H 0.176 0.824 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.211 2.938 26.003 27.427 hybrid contribution 0.786 -1.371 -1.167 1.965 sum -7.424 1.567 24.836 25.969 Atomic orbital electron populations 1.22063 0.93591 1.02993 1.02299 1.20802 0.94795 0.96306 0.83104 0.91446 1.21900 0.94605 1.01803 0.97353 1.20730 0.93451 0.94093 0.88791 1.42555 1.04501 1.65321 1.26395 1.19615 0.85254 1.27678 1.05385 0.91176 1.25539 1.01957 1.01163 0.97775 1.69808 1.34502 1.41867 1.15541 0.85111 0.80189 0.77142 0.77551 1.19360 1.21610 1.21943 1.46005 1.66412 1.14494 1.09004 1.18543 0.77475 0.86324 0.83787 1.90805 1.51125 1.16524 1.85441 1.20010 1.04605 0.94911 0.94645 1.21557 0.98022 0.91713 0.99500 1.21601 0.97197 1.01931 0.92758 1.21708 0.95936 0.93273 0.99665 1.21432 0.99602 0.95480 0.96432 1.18822 0.98149 0.91107 0.94433 1.19121 0.94626 0.92703 0.93952 1.22366 1.00938 0.94384 1.00132 1.23127 0.94675 0.93764 0.95230 1.67601 1.09950 1.41418 1.03071 1.22725 0.96754 0.90459 0.97120 1.22015 0.99874 0.96506 0.97707 0.90615 0.90956 0.93368 0.90150 0.90109 0.97682 0.96044 0.79198 0.93864 0.75437 0.83674 0.82239 0.81934 0.83421 0.82394 0.80010 0.82372 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.48 71.98 0.68 -2.67 16 2 C 0.15 4.07 2.57 44.99 0.12 4.19 16 3 H 0.07 2.10 7.58 -2.39 -0.02 2.08 16 4 C -0.12 -3.50 4.87 30.59 0.15 -3.35 16 5 C 0.16 6.16 6.15 86.38 0.53 6.69 16 6 N -0.74 -37.63 5.60 -343.44 -1.92 -39.55 16 7 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 9 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 10 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 11 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 14 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 15 N -0.71 -17.21 4.45 -445.56 -1.98 -19.20 16 16 C 0.55 15.00 6.86 86.74 0.60 15.59 16 17 O -0.56 -18.79 13.13 -3.91 -0.05 -18.85 16 18 C -0.14 -3.12 5.86 -19.91 -0.12 -3.24 16 19 C -0.09 -1.46 9.37 22.50 0.21 -1.25 16 20 C -0.12 -1.39 10.02 22.27 0.22 -1.16 16 21 C -0.09 -0.97 10.03 22.29 0.22 -0.74 16 22 C -0.11 -1.67 9.64 22.46 0.22 -1.46 16 23 C -0.02 -0.52 5.47 -19.82 -0.11 -0.63 16 24 C 0.00 0.11 4.10 -19.86 -0.08 0.02 16 25 C -0.16 -3.32 9.76 22.60 0.22 -3.10 16 26 C 0.09 1.96 11.17 84.62 0.95 2.90 16 27 N -0.51 -14.12 10.35 -196.11 -2.03 -16.15 16 28 C 0.08 2.37 11.17 84.63 0.95 3.32 16 29 C -0.14 -3.97 7.40 22.60 0.17 -3.81 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.02 0.84 7.75 -2.39 -0.02 0.82 16 37 H 0.38 19.87 7.67 -92.71 -0.71 19.16 16 38 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.41 8.44 7.19 -92.71 -0.67 7.78 16 40 H 0.15 1.84 7.02 -2.91 -0.02 1.82 16 41 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 43 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 44 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 45 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 46 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 47 H 0.11 3.37 7.84 -2.91 -0.02 3.35 16 Total: -1.00 -75.15 395.28 2.16 -72.99 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.39 Total: 36.39 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 6.23 Total: -5.43 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -5.65 Total: -133.21 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -75.15 2.16 -72.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497216946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.002 kcal (2) G-P(sol) polarization free energy of solvation -75.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds