Wall clock time and date at job start Tue Mar 31 2020 23:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47056 * 2 1 4 4 N 1.46906 * 109.47090 * 119.99528 * 2 1 3 5 5 C 1.46899 * 111.00254 * 275.00499 * 4 2 1 6 6 C 1.50691 * 109.47111 * 179.97438 * 5 4 2 7 7 O 1.21298 * 120.00028 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00016 * 179.97438 * 6 5 4 9 9 C 1.37100 * 119.99755 * 180.02562 * 8 6 5 10 10 H 1.08003 * 120.00394 * 359.97438 * 9 8 6 11 11 C 1.38957 * 119.99718 * 179.97438 * 9 8 6 12 12 N 1.31407 * 119.99571 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99906 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47384 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47196 * 119.99973 * 13 11 9 16 16 H 1.48500 * 109.47096 * 239.99851 * 13 11 9 17 17 C 1.52999 * 109.47579 * 240.00028 * 2 1 3 18 18 H 1.09002 * 109.46904 * 300.00065 * 17 2 1 19 19 C 1.52996 * 109.47102 * 180.02562 * 17 2 1 20 20 N 1.46492 * 109.46928 * 59.99615 * 17 2 1 21 21 C 1.34780 * 119.99991 * 204.99873 * 20 17 2 22 22 O 1.21734 * 120.00132 * 354.47608 * 21 20 17 23 23 C 1.46380 * 119.99841 * 174.46831 * 21 20 17 24 24 C 1.36713 * 126.82970 * 5.08762 * 23 21 20 25 25 N 1.33220 * 107.96438 * 179.87022 * 24 23 21 26 26 C 1.31533 * 109.76347 * 0.40243 * 25 24 23 27 27 O 1.35206 * 125.49556 * 179.77671 * 26 25 24 28 28 N 1.34950 * 109.01142 * 359.74574 * 26 25 24 29 29 C 1.46501 * 126.53975 * 179.97438 * 28 26 25 30 30 H 1.09002 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47008 * 60.00402 * 1 2 3 32 32 H 1.09004 * 109.47269 * 300.00205 * 1 2 3 33 33 H 1.00903 * 110.99632 * 38.95873 * 4 2 1 34 34 H 1.09002 * 109.47119 * 299.99994 * 5 4 2 35 35 H 1.09001 * 109.47082 * 59.99995 * 5 4 2 36 36 H 0.96997 * 119.99892 * 0.02562 * 8 6 5 37 37 H 0.97002 * 119.99594 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47110 * 299.99713 * 19 17 2 39 39 H 1.08994 * 109.47293 * 59.99773 * 19 17 2 40 40 H 1.09004 * 109.46792 * 179.97438 * 19 17 2 41 41 H 0.96996 * 120.00267 * 25.01093 * 20 17 2 42 42 H 1.08005 * 126.01525 * 359.97438 * 24 23 21 43 43 H 0.96708 * 113.99582 * 269.97265 * 27 26 25 44 44 H 1.09000 * 109.47613 * 269.57295 * 29 28 26 45 45 H 1.08998 * 109.47550 * 29.58104 * 29 28 26 46 46 H 1.09002 * 109.46515 * 149.57846 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3470 6 6 2.5872 -0.5217 3.5561 7 8 2.8668 -1.6989 3.4705 8 7 2.7280 0.1207 4.7326 9 6 3.1878 -0.5565 5.8325 10 1 3.4368 -1.6046 5.7563 11 6 3.3335 0.1059 7.0453 12 7 3.0301 1.3811 7.1380 13 14 3.9593 -0.8168 8.5441 14 1 4.2271 -2.2310 8.1787 15 1 5.2136 -0.1848 9.0264 16 1 2.9355 -0.7679 9.6186 17 6 2.0401 -0.7212 -1.2492 18 1 1.6768 -1.7489 -1.2492 19 6 3.5701 -0.7217 -1.2488 20 7 1.5517 -0.0307 -2.4453 21 6 1.4231 -0.7030 -3.6063 22 8 1.8065 -1.8556 -3.6880 23 6 0.8223 -0.0474 -4.7690 24 6 0.4354 1.2604 -4.8634 25 7 -0.0595 1.4554 -6.0848 26 6 -0.0135 0.3322 -6.7679 27 8 -0.4383 0.1698 -8.0411 28 7 0.5268 -0.6316 -5.9931 29 6 0.7567 -2.0281 -6.3715 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.4495 -1.4979 1.4101 34 1 2.7587 1.0463 2.1183 35 1 1.0869 0.6163 2.5526 36 1 2.5041 1.0619 4.8011 37 1 3.1315 1.8434 7.9847 38 1 3.9337 0.3059 -1.2486 39 1 3.9330 -1.2357 -0.3588 40 1 3.9334 -1.2360 -2.1385 41 1 1.3211 0.9105 -2.4018 42 1 0.5181 2.0049 -4.0853 43 1 -1.3666 -0.0907 -8.1158 44 1 -0.1193 -2.6235 -6.1137 45 1 0.9343 -2.0892 -7.4452 46 1 1.6261 -2.4109 -5.8370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505670675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:01 Heat of formation + Delta-G solvation = -75.049482 kcal Electronic energy + Delta-G solvation = -28837.833526 eV Core-core repulsion = 24569.962102 eV Total energy + Delta-G solvation = -4267.871424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.32787 -40.80301 -40.10607 -38.50986 -38.20646 -36.07148 -35.59771 -34.96435 -33.25533 -32.37544 -30.73039 -29.78854 -28.09750 -27.88815 -25.81144 -25.08011 -23.69789 -22.69045 -21.71696 -21.25910 -21.01836 -19.89251 -19.67785 -18.64150 -17.75608 -17.54190 -17.38850 -16.80508 -16.59368 -16.35085 -15.96165 -15.83530 -15.57865 -15.31431 -15.17139 -15.03168 -14.72072 -14.52891 -14.20385 -13.94197 -13.75138 -13.70674 -13.50520 -13.34715 -13.19165 -13.12341 -12.96903 -12.68322 -12.51376 -12.38154 -12.19778 -12.10792 -11.64580 -11.48947 -11.44215 -11.00913 -10.89905 -10.34698 -10.21981 -9.98315 -9.56773 -9.24632 -8.44906 -5.92850 0.09557 1.08592 1.37716 1.43240 1.54181 1.56902 2.09187 2.10053 2.23417 2.31916 2.80532 3.03366 3.23096 3.52704 3.61503 3.73781 3.79783 3.93192 4.07123 4.25640 4.26249 4.32042 4.35817 4.51921 4.52506 4.60470 4.62125 4.67155 4.85557 4.88592 4.94216 5.01537 5.10208 5.28292 5.31691 5.40345 5.43747 5.52891 5.53375 5.93075 6.14051 6.39579 6.43824 6.56091 6.63297 6.69693 7.12720 7.15851 7.60248 8.15992 8.72599 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.036797 B = 0.001715 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.739013 B =16318.687364 C =16732.225153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.105 0.895 4 N -0.673 5.673 5 C 0.069 3.931 6 C 0.437 3.563 7 O -0.624 6.624 8 N -0.574 5.574 9 C -0.332 4.332 10 H 0.077 0.923 11 C -0.013 4.013 12 N -0.919 5.919 13 Si 0.990 3.010 14 H -0.275 1.275 15 H -0.272 1.272 16 H -0.271 1.271 17 C 0.168 3.832 18 H 0.068 0.932 19 C -0.147 4.147 20 N -0.692 5.692 21 C 0.598 3.402 22 O -0.578 6.578 23 C -0.098 4.098 24 C 0.066 3.934 25 N -0.517 5.517 26 C 0.399 3.601 27 O -0.443 6.443 28 N -0.432 5.432 29 C 0.063 3.937 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.345 0.655 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.417 0.583 42 H 0.217 0.783 43 H 0.428 0.572 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.876 2.655 -26.861 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.123 0.877 4 N -0.305 5.305 5 C -0.063 4.063 6 C 0.225 3.775 7 O -0.511 6.511 8 N -0.212 5.212 9 C -0.462 4.462 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.200 1.200 15 H -0.197 1.197 16 H -0.196 1.196 17 C 0.063 3.937 18 H 0.086 0.914 19 C -0.206 4.206 20 N -0.344 5.344 21 C 0.386 3.614 22 O -0.459 6.459 23 C -0.214 4.214 24 C -0.089 4.089 25 N -0.247 5.247 26 C 0.100 3.900 27 O -0.248 6.248 28 N -0.125 5.125 29 C -0.078 4.078 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.164 0.836 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.255 0.745 42 H 0.234 0.766 43 H 0.290 0.710 44 H 0.112 0.888 45 H 0.128 0.872 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.526 1.934 -27.593 28.945 hybrid contribution -0.889 -0.601 1.392 1.758 sum -9.416 1.333 -26.201 27.874 Atomic orbital electron populations 1.22490 0.95556 1.02353 1.03456 1.21771 0.93712 0.98657 0.88511 0.87659 1.59937 1.58552 1.09161 1.02805 1.21540 1.01386 0.95173 0.88184 1.20975 0.83284 0.88015 0.85232 1.90508 1.56607 1.18470 1.85489 1.41931 1.58416 1.12626 1.08191 1.19684 1.42001 0.95888 0.88612 0.90473 1.25990 0.97330 0.96611 1.01294 1.69668 1.48757 1.09586 1.28032 0.84905 0.78165 0.78027 0.77450 1.19960 1.19703 1.19631 1.20660 0.94238 0.96246 0.82582 0.91390 1.21954 0.94938 1.02331 1.01328 1.45427 1.66394 1.14594 1.07949 1.16713 0.77622 0.84971 0.82123 1.90817 1.51718 1.19065 1.84255 1.20551 1.16396 0.95930 0.88508 1.23099 0.97537 0.93557 0.94739 1.70343 1.24297 1.23880 1.06131 1.20380 1.00031 0.83843 0.85796 1.84774 1.35483 1.89645 1.14863 1.45813 1.44897 1.11524 1.10280 1.22405 1.04861 0.76928 1.03601 0.93248 0.89774 0.91999 0.83601 0.87324 0.91154 0.76903 0.91360 0.91558 0.91769 0.94160 0.74479 0.76601 0.71010 0.88786 0.87239 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 9.00 71.98 0.65 -2.16 16 2 C 0.08 1.55 2.22 44.91 0.10 1.65 16 3 H 0.11 1.56 7.80 -2.39 -0.02 1.54 16 4 N -0.67 -18.71 5.11 -495.58 -2.53 -21.24 16 5 C 0.07 2.12 5.96 85.55 0.51 2.63 16 6 C 0.44 19.94 7.82 87.65 0.69 20.63 16 7 O -0.62 -33.85 15.78 -3.08 -0.05 -33.90 16 8 N -0.57 -28.61 5.29 -306.97 -1.62 -30.24 16 9 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 10 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 11 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 12 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 13 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 C 0.17 3.38 2.30 44.99 0.10 3.49 16 18 H 0.07 1.72 7.66 -2.39 -0.02 1.70 16 19 C -0.15 -3.44 9.33 71.98 0.67 -2.77 16 20 N -0.69 -10.48 4.37 -446.78 -1.95 -12.43 16 21 C 0.60 12.05 7.73 86.36 0.67 12.72 16 22 O -0.58 -15.84 14.54 -4.46 -0.06 -15.91 16 23 C -0.10 -1.72 6.92 39.80 0.28 -1.44 16 24 C 0.07 0.96 11.36 84.13 0.96 1.92 16 25 N -0.52 -9.69 11.22 -313.65 -3.52 -13.21 16 26 C 0.40 6.57 9.01 179.99 1.62 8.19 16 27 O -0.44 -4.85 13.52 -84.87 -1.15 -5.99 16 28 N -0.43 -7.16 3.20 -651.99 -2.09 -9.24 16 29 C 0.06 0.79 10.69 127.77 1.37 2.15 16 30 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.08 0.93 7.45 -2.39 -0.02 0.91 16 32 H 0.06 0.99 7.45 -2.38 -0.02 0.97 16 33 H 0.34 10.60 8.17 -89.69 -0.73 9.87 16 34 H 0.11 2.90 8.06 -2.39 -0.02 2.89 16 35 H 0.07 1.83 7.44 -2.39 -0.02 1.82 16 36 H 0.40 18.63 7.90 -92.71 -0.73 17.89 16 37 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.82 7.60 -2.39 -0.02 1.80 16 40 H 0.04 1.02 8.07 -2.38 -0.02 1.00 16 41 H 0.42 3.47 7.32 -92.71 -0.68 2.79 16 42 H 0.22 1.40 7.45 -2.91 -0.02 1.38 16 43 H 0.43 0.03 9.06 -74.05 -0.67 -0.64 16 44 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.11 0.87 8.12 -2.39 -0.02 0.85 16 46 H 0.09 1.52 6.43 -2.39 -0.02 1.51 16 Total: -1.00 -78.85 390.32 -3.53 -82.38 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -1.75 Total: 34.65 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 8.88 Total: 28.98 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -11.43 Total: -134.91 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -1.26 Total: -55.80 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -78.85 -3.53 -82.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505670675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.327 kcal (2) G-P(sol) polarization free energy of solvation -78.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds