Wall clock time and date at job start Tue Mar 31 2020 23:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46976 * 2 1 4 4 N 1.46498 * 109.47639 * 119.99997 * 2 1 3 5 5 C 1.34771 * 120.00148 * 275.00589 * 4 2 1 6 6 O 1.21738 * 120.00094 * 354.65110 * 5 4 2 7 7 C 1.46379 * 120.00038 * 174.66059 * 5 4 2 8 8 C 1.36719 * 126.82447 * 4.95187 * 7 5 4 9 9 N 1.33229 * 107.96148 * 179.97438 * 8 7 5 10 10 C 1.31536 * 109.76338 * 0.02562 * 9 8 7 11 11 O 1.35198 * 125.49212 * 180.02562 * 10 9 8 12 12 N 1.34945 * 109.00890 * 359.76345 * 10 9 8 13 13 C 1.46511 * 126.53885 * 180.26633 * 12 10 9 14 14 C 1.53000 * 109.46987 * 240.00608 * 2 1 3 15 15 H 1.09001 * 109.47291 * 299.99501 * 14 2 1 16 16 C 1.53000 * 109.47221 * 179.97438 * 14 2 1 17 17 N 1.46904 * 109.47266 * 59.99475 * 14 2 1 18 18 C 1.46895 * 110.99856 * 204.99897 * 17 14 2 19 19 C 1.50702 * 109.47136 * 180.02562 * 18 17 14 20 20 O 1.21290 * 119.99697 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99951 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.99846 * 179.97438 * 21 19 18 23 23 H 1.08007 * 119.99724 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00181 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99905 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 119.99701 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47567 * 89.99807 * 26 24 22 28 28 H 1.48506 * 109.46807 * 209.99864 * 26 24 22 29 29 H 1.48504 * 109.47251 * 329.99578 * 26 24 22 30 30 H 1.09005 * 109.47007 * 299.99207 * 1 2 3 31 31 H 1.08996 * 109.47878 * 59.99864 * 1 2 3 32 32 H 1.09001 * 109.46976 * 180.02562 * 1 2 3 33 33 H 0.97000 * 119.99296 * 95.00302 * 4 2 1 34 34 H 1.08007 * 126.01884 * 359.94386 * 8 7 5 35 35 H 0.96705 * 113.99717 * 90.02558 * 11 10 9 36 36 H 1.09000 * 109.46872 * 273.50122 * 13 12 10 37 37 H 1.08993 * 109.47274 * 33.51037 * 13 12 10 38 38 H 1.08998 * 109.46661 * 153.51171 * 13 12 10 39 39 H 1.09001 * 109.47103 * 300.00257 * 16 14 2 40 40 H 1.09004 * 109.46624 * 59.99925 * 16 14 2 41 41 H 1.08999 * 109.47321 * 179.97438 * 16 14 2 42 42 H 1.00905 * 111.00018 * 81.04816 * 17 14 2 43 43 H 1.09001 * 109.47512 * 299.99969 * 18 17 14 44 44 H 1.09001 * 109.47240 * 59.99989 * 18 17 14 45 45 H 0.96997 * 120.00467 * 359.97438 * 21 19 18 46 46 H 0.97002 * 119.99719 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.9513 1.1828 2.3899 7 6 2.5226 -0.7323 3.5785 8 6 2.8653 -2.0516 3.6840 9 7 3.1370 -2.3044 4.9636 10 6 2.9829 -1.2094 5.6758 11 8 3.1763 -1.1070 7.0099 12 7 2.6062 -0.2033 4.8592 13 6 2.3353 1.1825 5.2500 14 6 2.0400 -0.7211 -1.2493 15 1 1.6767 -1.7488 -1.2494 16 6 3.5700 -0.7206 -1.2497 17 7 1.5502 -0.0286 -2.4487 18 6 1.4874 -0.9436 -3.5962 19 6 0.9825 -0.1992 -4.8053 20 8 0.7020 0.9777 -4.7194 21 7 0.8416 -0.8414 -5.9818 22 6 0.3817 -0.1643 -7.0816 23 1 0.1319 0.8837 -7.0051 24 6 0.2369 -0.8263 -8.2947 25 7 -0.2044 -0.1773 -9.3487 26 14 0.6682 -2.6389 -8.4268 27 1 -0.5326 -3.4572 -8.1205 28 1 1.1325 -2.9381 -9.8053 29 1 1.7476 -2.9627 -7.4597 30 1 -0.3633 0.5137 0.8901 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2492 -1.6317 1.1524 34 1 2.9077 -2.7636 2.8730 35 1 4.0795 -0.8674 7.2592 36 1 1.2966 1.2739 5.5677 37 1 2.9930 1.4632 6.0725 38 1 2.5146 1.8412 4.4003 39 1 3.9329 0.3072 -1.2498 40 1 3.9336 -1.2343 -0.3597 41 1 3.9333 -1.2347 -2.1395 42 1 2.1203 0.7769 -2.6593 43 1 2.4828 -1.3372 -3.8019 44 1 0.8111 -1.7673 -3.3675 45 1 1.0655 -1.7827 -6.0504 46 1 -0.3058 -0.6396 -10.1955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505670676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:05 Heat of formation + Delta-G solvation = -35.761165 kcal Electronic energy + Delta-G solvation = -28887.395170 eV Core-core repulsion = 24621.227415 eV Total energy + Delta-G solvation = -4266.167755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.72218 -39.99642 -38.63858 -37.89212 -37.29820 -34.98482 -34.33512 -33.88103 -31.74429 -31.45028 -29.87290 -29.10029 -27.56535 -26.51901 -24.42967 -23.95531 -22.82840 -22.08309 -20.86286 -20.54143 -19.42032 -19.15078 -18.45388 -17.89911 -16.97393 -16.61883 -16.12739 -15.95621 -15.42928 -15.24006 -15.01933 -14.85970 -14.57349 -14.24571 -14.06052 -13.96968 -13.71995 -13.37207 -13.22582 -13.19754 -13.08124 -12.71022 -12.61022 -12.40565 -12.24603 -12.05506 -11.69117 -11.66887 -11.39518 -11.17498 -10.81165 -10.75042 -10.61418 -10.32039 -10.22351 -9.99217 -9.59115 -9.45784 -8.95606 -8.62576 -8.22339 -8.17523 -6.32581 -3.84162 0.71822 1.68084 2.13814 2.83845 2.93233 3.00305 3.05262 3.13693 3.27551 3.71617 4.05432 4.09185 4.19638 4.27798 4.48398 4.56365 4.72063 4.74099 4.81324 4.92126 5.03954 5.08838 5.20286 5.34492 5.37900 5.49149 5.52480 5.56267 5.66359 5.75612 5.82767 5.86474 5.89722 5.92182 5.95934 5.99748 6.24367 6.45767 6.95065 6.99684 7.11401 7.29063 7.48674 7.56278 7.82237 8.12840 8.57798 8.93431 9.40648 9.80535 10.80498 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031375 B = 0.001805 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.214062 B =15508.365248 C =16034.949853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 H 0.094 0.906 4 N -0.708 5.708 5 C 0.598 3.402 6 O -0.541 6.541 7 C -0.077 4.077 8 C 0.054 3.946 9 N -0.487 5.487 10 C 0.395 3.605 11 O -0.439 6.439 12 N -0.427 5.427 13 C 0.064 3.936 14 C 0.077 3.923 15 H 0.083 0.917 16 C -0.185 4.185 17 N -0.657 5.657 18 C 0.050 3.950 19 C 0.449 3.551 20 O -0.564 6.564 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.400 0.600 34 H 0.186 0.814 35 H 0.405 0.595 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.355 0.645 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.785 -5.537 29.101 31.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 H 0.112 0.888 4 N -0.360 5.360 5 C 0.384 3.616 6 O -0.419 6.419 7 C -0.193 4.193 8 C -0.101 4.101 9 N -0.215 5.215 10 C 0.096 3.904 11 O -0.240 6.240 12 N -0.119 5.119 13 C -0.078 4.078 14 C -0.034 4.034 15 H 0.102 0.898 16 C -0.244 4.244 17 N -0.290 5.290 18 C -0.083 4.083 19 C 0.235 3.765 20 O -0.445 6.445 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.235 0.765 34 H 0.203 0.797 35 H 0.262 0.738 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.175 0.825 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.333 -4.626 29.635 31.129 hybrid contribution 1.626 -1.175 -0.648 2.109 sum 9.959 -5.802 28.986 31.194 Atomic orbital electron populations 1.22061 0.93930 1.02054 1.03124 1.20948 0.95017 0.97292 0.81592 0.88844 1.45678 1.67067 1.14056 1.09156 1.16537 0.77023 0.86142 0.81906 1.90822 1.51427 1.13918 1.85759 1.20621 1.17401 0.95596 0.85702 1.22554 1.00717 0.92780 0.94039 1.70316 1.22794 1.24496 1.03925 1.20250 1.02639 0.83544 0.83985 1.84837 1.36129 1.90490 1.12537 1.45672 1.49098 1.10667 1.06504 1.22340 1.03100 0.78732 1.03630 1.21756 0.92740 0.98243 0.90686 0.89849 1.22552 0.96916 1.02744 1.02228 1.59981 1.57762 1.09125 1.02126 1.21727 1.00054 0.95742 0.90771 1.19691 0.84822 0.88263 0.83754 1.90576 1.53747 1.15987 1.84221 1.42202 1.60099 1.11105 1.09568 1.19434 1.40156 0.98035 0.85785 0.86270 1.25044 0.97482 0.98405 0.95250 1.69622 1.45044 1.36541 1.00856 0.86667 0.78982 0.85165 0.78514 1.19590 1.20212 1.19556 0.93164 0.89210 0.92951 0.76503 0.79709 0.73767 0.89898 0.89596 0.86993 0.92043 0.92101 0.92171 0.82479 0.93615 0.89382 0.79714 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.33 37.16 0.35 -1.37 16 2 C 0.16 1.56 2.39 -67.93 -0.16 1.40 16 3 H 0.09 1.13 7.50 -51.93 -0.39 0.74 16 4 N -0.71 -5.68 4.37 -55.21 -0.24 -5.92 16 5 C 0.60 6.05 7.73 -12.99 -0.10 5.95 16 6 O -0.54 -7.12 14.44 5.16 0.07 -7.05 16 7 C -0.08 -0.70 6.92 -81.98 -0.57 -1.27 16 8 C 0.05 0.44 11.36 -17.49 -0.20 0.24 16 9 N -0.49 -4.90 11.22 -14.62 -0.16 -5.06 16 10 C 0.40 3.49 9.01 -89.59 -0.81 2.69 16 11 O -0.44 -2.76 13.53 -17.29 -0.23 -2.99 16 12 N -0.43 -3.68 3.20 -122.12 -0.39 -4.07 16 13 C 0.06 0.41 10.77 59.85 0.64 1.05 16 14 C 0.08 0.74 2.22 -67.71 -0.15 0.59 16 15 H 0.08 0.71 7.80 -51.93 -0.40 0.30 16 16 C -0.19 -1.57 9.00 37.16 0.33 -1.24 16 17 N -0.66 -8.94 5.11 -107.99 -0.55 -9.49 16 18 C 0.05 0.74 5.96 -4.98 -0.03 0.71 16 19 C 0.45 9.73 7.82 -10.98 -0.09 9.65 16 20 O -0.56 -14.65 15.78 5.55 0.09 -14.56 16 21 N -0.59 -13.62 5.09 -10.96 -0.06 -13.68 16 22 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 23 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 24 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.48 13.96 55.50 0.77 -24.71 16 26 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16 27 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 29 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.19 7.60 -51.93 -0.39 0.80 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 2.10 7.32 -40.82 -0.30 1.80 16 34 H 0.19 0.85 7.45 -52.48 -0.39 0.46 16 35 H 0.40 0.37 9.06 45.56 0.41 0.78 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.11 0.88 6.25 -51.93 -0.32 0.55 16 39 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.06 0.41 7.45 -51.93 -0.39 0.03 16 41 H 0.06 0.52 7.45 -51.93 -0.39 0.14 16 42 H 0.35 5.20 8.17 -39.29 -0.32 4.88 16 43 H 0.05 0.59 7.44 -51.93 -0.39 0.21 16 44 H 0.09 1.16 8.06 -51.93 -0.42 0.74 16 45 H 0.37 7.45 5.76 -40.82 -0.24 7.22 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -36.87 387.03 -6.20 -43.07 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -5.59 Total: 13.58 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -1.02 Total: 10.77 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.63 Total: -62.94 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.07 Total: -24.60 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.87 -6.20 -43.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505670676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.310 kcal (2) G-P(sol) polarization free energy of solvation -36.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds