Wall clock time and date at job start Tue Mar 31 2020 23:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47271 * 2 1 4 4 N 1.46902 * 109.47293 * 239.99232 * 2 1 3 5 5 C 1.46900 * 110.99537 * 85.00246 * 4 2 1 6 6 C 1.50697 * 109.46915 * 180.02562 * 5 4 2 7 7 O 1.21293 * 120.00244 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00165 * 180.02562 * 6 5 4 9 9 C 1.37098 * 120.00483 * 180.02562 * 8 6 5 10 10 H 1.07999 * 119.99408 * 359.97438 * 9 8 6 11 11 C 1.38943 * 120.00507 * 179.97438 * 9 8 6 12 12 N 1.31420 * 119.99856 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00417 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47002 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.46868 * 119.99938 * 13 11 9 16 16 H 1.48499 * 109.47336 * 240.00326 * 13 11 9 17 17 C 1.53006 * 109.46712 * 119.99817 * 2 1 3 18 18 H 1.09001 * 109.47077 * 185.00513 * 17 2 1 19 19 C 1.52995 * 109.47238 * 64.99746 * 17 2 1 20 20 N 1.46503 * 109.46923 * 304.99701 * 17 2 1 21 21 C 1.34777 * 120.00198 * 205.00314 * 20 17 2 22 22 O 1.21738 * 119.99586 * 354.46849 * 21 20 17 23 23 C 1.46375 * 120.00185 * 174.47074 * 21 20 17 24 24 C 1.36718 * 126.82621 * 5.07683 * 23 21 20 25 25 N 1.33225 * 107.96169 * 179.87436 * 24 23 21 26 26 C 1.31536 * 109.76038 * 0.40397 * 25 24 23 27 27 O 1.35211 * 125.49191 * 179.77308 * 26 25 24 28 28 N 1.34940 * 109.01593 * 359.75053 * 26 25 24 29 29 C 1.46505 * 126.54314 * 179.97438 * 28 26 25 30 30 H 1.08996 * 109.47389 * 300.00801 * 1 2 3 31 31 H 1.09005 * 109.46827 * 60.00490 * 1 2 3 32 32 H 1.08996 * 109.47337 * 180.02562 * 1 2 3 33 33 H 1.00899 * 110.99998 * 321.05576 * 4 2 1 34 34 H 1.09000 * 109.47184 * 299.99971 * 5 4 2 35 35 H 1.09003 * 109.47229 * 60.00179 * 5 4 2 36 36 H 0.97001 * 119.99634 * 359.97438 * 8 6 5 37 37 H 0.96994 * 119.99766 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47408 * 299.99931 * 19 17 2 39 39 H 1.09005 * 109.46774 * 60.00253 * 19 17 2 40 40 H 1.09005 * 109.46927 * 180.02562 * 19 17 2 41 41 H 0.97003 * 120.00184 * 25.00501 * 20 17 2 42 42 H 1.07993 * 126.01927 * 359.97438 * 24 23 21 43 43 H 0.96701 * 113.99652 * 269.97103 * 27 26 25 44 44 H 1.09000 * 109.47010 * 269.58923 * 29 28 26 45 45 H 1.08996 * 109.47031 * 29.59424 * 29 28 26 46 46 H 1.09006 * 109.46894 * 149.59110 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6927 -1.1993 5 6 2.0825 0.2224 -2.3468 6 6 2.5874 -0.5221 -3.5559 7 8 2.8678 -1.6991 -3.4700 8 7 2.7284 0.1200 -4.7324 9 6 3.1872 -0.5573 -5.8325 10 1 3.4361 -1.6055 -5.7562 11 6 3.3320 0.1045 -7.0456 12 7 3.0297 1.3801 -7.1383 13 14 3.9579 -0.8182 -8.5443 14 1 4.2255 -2.2325 -8.1787 15 1 2.9336 -0.7704 -9.6183 16 1 5.2116 -0.1857 -9.0273 17 6 2.0399 -0.7213 1.2493 18 1 3.1262 -0.6443 1.2954 19 6 1.6351 -2.1954 1.1881 20 7 1.4557 -0.1035 2.4424 21 6 2.0910 -0.1935 3.6276 22 8 3.0969 -0.8718 3.7291 23 6 1.5717 0.5242 4.7928 24 6 0.4101 1.2418 4.8625 25 7 0.3041 1.7334 6.0962 26 6 1.3468 1.3697 6.8108 27 8 1.5647 1.6971 8.1045 28 7 2.1637 0.6166 6.0450 29 6 3.4333 0.0123 6.4564 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.4495 -1.4980 -1.4099 34 1 1.0871 0.6161 -2.5525 35 1 2.7590 1.0460 -2.1182 36 1 2.5045 1.0614 -4.8010 37 1 3.1311 1.8422 -7.9850 38 1 0.5488 -2.2723 1.1422 39 1 2.0698 -2.6550 0.3004 40 1 1.9980 -2.7091 2.0784 41 1 0.6116 0.3703 2.3794 42 1 -0.2978 1.3838 4.0594 43 1 2.0583 2.5200 8.2241 44 1 4.2489 0.7062 6.2525 45 1 3.4019 -0.2080 7.5234 46 1 3.5937 -0.9108 5.8993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505670677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:09 Heat of formation + Delta-G solvation = -39.790561 kcal Electronic energy + Delta-G solvation = -28844.110840 eV Core-core repulsion = 24577.768358 eV Total energy + Delta-G solvation = -4266.342483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.68881 -40.00025 -38.50783 -37.85368 -37.31631 -34.90346 -34.28039 -33.81006 -31.59841 -31.16154 -29.58907 -28.84591 -27.52816 -26.43182 -24.90782 -24.09849 -23.15102 -22.07478 -20.63654 -19.92208 -19.35184 -19.10562 -18.04481 -17.83056 -17.04938 -16.40221 -16.06098 -15.88533 -15.62297 -15.11863 -14.98024 -14.76512 -14.56171 -14.45325 -14.07667 -13.93367 -13.77421 -13.31518 -13.26062 -13.15200 -12.95019 -12.67832 -12.38683 -12.27225 -12.19936 -11.93662 -11.56764 -11.44594 -11.08290 -11.02214 -10.89295 -10.72375 -10.35303 -10.28652 -10.23953 -10.17570 -9.53484 -9.40361 -8.91579 -8.50412 -8.11410 -7.97665 -6.43366 -3.84128 0.75546 1.69807 2.18902 2.87449 2.97972 3.15455 3.26296 3.31393 3.33580 3.88744 4.07541 4.20522 4.31102 4.32802 4.55540 4.67987 4.74043 4.74931 4.84802 5.05315 5.12762 5.15332 5.24345 5.31643 5.33346 5.50658 5.58458 5.63833 5.72873 5.81824 5.88563 5.90788 5.95471 5.99740 6.03824 6.23403 6.30290 6.37564 6.98193 7.09232 7.18209 7.32374 7.54199 7.58356 7.86594 8.04915 8.59351 9.16524 9.52570 10.03725 10.74408 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029659 B = 0.001730 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.841415 B =16179.150873 C =16383.788021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.077 3.923 3 H 0.084 0.916 4 N -0.658 5.658 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.104 0.896 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.158 3.842 18 H 0.098 0.902 19 C -0.164 4.164 20 N -0.710 5.710 21 C 0.596 3.404 22 O -0.540 6.540 23 C -0.076 4.076 24 C 0.053 3.947 25 N -0.487 5.487 26 C 0.395 3.605 27 O -0.440 6.440 28 N -0.427 5.427 29 C 0.063 3.937 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.354 0.646 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.400 0.600 42 H 0.185 0.815 43 H 0.406 0.594 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 3.754 26.164 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.034 4.034 3 H 0.102 0.898 4 N -0.291 5.291 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.200 5.200 9 C -0.428 4.428 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.054 3.946 18 H 0.116 0.884 19 C -0.222 4.222 20 N -0.363 5.363 21 C 0.382 3.618 22 O -0.418 6.418 23 C -0.193 4.193 24 C -0.102 4.102 25 N -0.215 5.215 26 C 0.096 3.904 27 O -0.241 6.241 28 N -0.119 5.119 29 C -0.079 4.079 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.174 0.826 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.236 0.764 42 H 0.202 0.798 43 H 0.263 0.737 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.292 2.596 26.859 27.323 hybrid contribution -0.257 0.647 -1.245 1.427 sum -4.548 3.243 25.614 26.216 Atomic orbital electron populations 1.22632 0.97251 1.02868 1.02184 1.21729 0.92737 0.98230 0.90719 0.89781 1.60013 1.57714 1.09137 1.02239 1.21707 1.00034 0.95662 0.90728 1.19792 0.85223 0.88248 0.84167 1.90530 1.55268 1.16265 1.84595 1.41868 1.57775 1.12442 1.07953 1.19756 1.39894 0.96466 0.86701 0.87837 1.25266 0.97658 0.95785 0.99278 1.69621 1.48760 1.08838 1.27099 0.85798 0.78239 0.79648 0.80652 1.19206 1.20785 1.20747 1.20950 0.99390 0.92585 0.81684 0.88422 1.22188 1.01236 0.95441 1.03375 1.45845 1.25682 1.57051 1.07718 1.16573 0.83290 0.80206 0.81737 1.90831 1.25625 1.40923 1.84383 1.20638 0.99620 1.11675 0.87329 1.22542 0.95758 0.97145 0.94717 1.70310 1.21615 1.25382 1.04194 1.20233 0.88307 0.96771 0.85121 1.84814 1.77397 1.46751 1.15112 1.45663 1.18574 1.38565 1.09136 1.22343 0.81957 1.01189 1.02413 0.92432 0.91804 0.91504 0.82565 0.93675 0.89531 0.77476 0.91927 0.92715 0.89852 0.92400 0.76395 0.79770 0.73684 0.89952 0.89169 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 8.68 37.16 0.32 -1.25 16 2 C 0.08 0.81 2.64 -67.71 -0.18 0.63 16 3 H 0.08 0.86 7.80 -51.93 -0.40 0.45 16 4 N -0.66 -9.56 5.23 -107.99 -0.56 -10.13 16 5 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 6 C 0.44 10.05 7.82 -10.99 -0.09 9.97 16 7 O -0.58 -15.41 15.78 5.55 0.09 -15.33 16 8 N -0.56 -13.98 5.29 -10.97 -0.06 -14.04 16 9 C -0.30 -8.23 9.68 -14.94 -0.14 -8.37 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 13 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.16 1.69 2.59 -67.93 -0.18 1.51 16 18 H 0.10 1.29 7.66 -51.93 -0.40 0.89 16 19 C -0.16 -1.80 8.86 37.16 0.33 -1.48 16 20 N -0.71 -6.16 4.97 -55.20 -0.27 -6.44 16 21 C 0.60 6.37 7.73 -12.99 -0.10 6.27 16 22 O -0.54 -7.39 14.54 5.15 0.07 -7.31 16 23 C -0.08 -0.73 6.92 -81.98 -0.57 -1.30 16 24 C 0.05 0.46 11.36 -17.50 -0.20 0.26 16 25 N -0.49 -5.06 11.22 -14.62 -0.16 -5.22 16 26 C 0.40 3.61 9.01 -89.60 -0.81 2.80 16 27 O -0.44 -2.86 13.52 -17.33 -0.23 -3.09 16 28 N -0.43 -3.83 3.20 -122.12 -0.39 -4.22 16 29 C 0.06 0.42 10.69 59.85 0.64 1.06 16 30 H 0.06 0.33 6.29 -51.93 -0.33 0.01 16 31 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 32 H 0.07 0.56 6.55 -51.93 -0.34 0.22 16 33 H 0.35 5.33 7.39 -39.29 -0.29 5.04 16 34 H 0.05 0.65 7.44 -51.93 -0.39 0.27 16 35 H 0.09 1.32 8.06 -51.93 -0.42 0.90 16 36 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 37 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 39 H 0.08 1.04 7.13 -51.93 -0.37 0.67 16 40 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.40 2.42 5.51 -40.82 -0.22 2.20 16 42 H 0.19 0.94 7.45 -52.49 -0.39 0.55 16 43 H 0.41 0.50 9.06 45.56 0.41 0.91 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.09 0.42 8.12 -51.93 -0.42 0.00 16 46 H 0.11 0.92 6.43 -51.93 -0.33 0.58 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -35.68 383.58 -6.43 -42.11 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -5.30 Total: 14.20 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: -1.09 Total: 11.39 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -0.73 Total: -63.59 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.07 Total: -25.73 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.68 -6.43 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505670677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.316 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds