Wall clock time and date at job start Tue Mar 31 2020 23:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47271 * 2 1 4 4 N 1.46902 * 109.47293 * 239.99232 * 2 1 3 5 5 C 1.46900 * 110.99537 * 85.00246 * 4 2 1 6 6 C 1.50697 * 109.46915 * 180.02562 * 5 4 2 7 7 O 1.21293 * 120.00244 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00165 * 180.02562 * 6 5 4 9 9 C 1.37098 * 120.00483 * 180.02562 * 8 6 5 10 10 H 1.07999 * 119.99408 * 359.97438 * 9 8 6 11 11 C 1.38943 * 120.00507 * 179.97438 * 9 8 6 12 12 N 1.31420 * 119.99856 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00417 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47002 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.46868 * 119.99938 * 13 11 9 16 16 H 1.48499 * 109.47336 * 240.00326 * 13 11 9 17 17 C 1.53006 * 109.46712 * 119.99817 * 2 1 3 18 18 H 1.09001 * 109.47077 * 185.00513 * 17 2 1 19 19 C 1.52995 * 109.47238 * 64.99746 * 17 2 1 20 20 N 1.46503 * 109.46923 * 304.99701 * 17 2 1 21 21 C 1.34777 * 120.00198 * 205.00314 * 20 17 2 22 22 O 1.21738 * 119.99586 * 354.46849 * 21 20 17 23 23 C 1.46375 * 120.00185 * 174.47074 * 21 20 17 24 24 C 1.36718 * 126.82621 * 5.07683 * 23 21 20 25 25 N 1.33225 * 107.96169 * 179.87436 * 24 23 21 26 26 C 1.31536 * 109.76038 * 0.40397 * 25 24 23 27 27 O 1.35211 * 125.49191 * 179.77308 * 26 25 24 28 28 N 1.34940 * 109.01593 * 359.75053 * 26 25 24 29 29 C 1.46505 * 126.54314 * 179.97438 * 28 26 25 30 30 H 1.08996 * 109.47389 * 300.00801 * 1 2 3 31 31 H 1.09005 * 109.46827 * 60.00490 * 1 2 3 32 32 H 1.08996 * 109.47337 * 180.02562 * 1 2 3 33 33 H 1.00899 * 110.99998 * 321.05576 * 4 2 1 34 34 H 1.09000 * 109.47184 * 299.99971 * 5 4 2 35 35 H 1.09003 * 109.47229 * 60.00179 * 5 4 2 36 36 H 0.97001 * 119.99634 * 359.97438 * 8 6 5 37 37 H 0.96994 * 119.99766 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47408 * 299.99931 * 19 17 2 39 39 H 1.09005 * 109.46774 * 60.00253 * 19 17 2 40 40 H 1.09005 * 109.46927 * 180.02562 * 19 17 2 41 41 H 0.97003 * 120.00184 * 25.00501 * 20 17 2 42 42 H 1.07993 * 126.01927 * 359.97438 * 24 23 21 43 43 H 0.96701 * 113.99652 * 269.97103 * 27 26 25 44 44 H 1.09000 * 109.47010 * 269.58923 * 29 28 26 45 45 H 1.08996 * 109.47031 * 29.59424 * 29 28 26 46 46 H 1.09006 * 109.46894 * 149.59110 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6927 -1.1993 5 6 2.0825 0.2224 -2.3468 6 6 2.5874 -0.5221 -3.5559 7 8 2.8678 -1.6991 -3.4700 8 7 2.7284 0.1200 -4.7324 9 6 3.1872 -0.5573 -5.8325 10 1 3.4361 -1.6055 -5.7562 11 6 3.3320 0.1045 -7.0456 12 7 3.0297 1.3801 -7.1383 13 14 3.9579 -0.8182 -8.5443 14 1 4.2255 -2.2325 -8.1787 15 1 2.9336 -0.7704 -9.6183 16 1 5.2116 -0.1857 -9.0273 17 6 2.0399 -0.7213 1.2493 18 1 3.1262 -0.6443 1.2954 19 6 1.6351 -2.1954 1.1881 20 7 1.4557 -0.1035 2.4424 21 6 2.0910 -0.1935 3.6276 22 8 3.0969 -0.8718 3.7291 23 6 1.5717 0.5242 4.7928 24 6 0.4101 1.2418 4.8625 25 7 0.3041 1.7334 6.0962 26 6 1.3468 1.3697 6.8108 27 8 1.5647 1.6971 8.1045 28 7 2.1637 0.6166 6.0450 29 6 3.4333 0.0123 6.4564 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.4495 -1.4980 -1.4099 34 1 1.0871 0.6161 -2.5525 35 1 2.7590 1.0460 -2.1182 36 1 2.5045 1.0614 -4.8010 37 1 3.1311 1.8422 -7.9850 38 1 0.5488 -2.2723 1.1422 39 1 2.0698 -2.6550 0.3004 40 1 1.9980 -2.7091 2.0784 41 1 0.6116 0.3703 2.3794 42 1 -0.2978 1.3838 4.0594 43 1 2.0583 2.5200 8.2241 44 1 4.2489 0.7062 6.2525 45 1 3.4019 -0.2080 7.5234 46 1 3.5937 -0.9108 5.8993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505670677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:07 Heat of formation + Delta-G solvation = -72.090735 kcal Electronic energy + Delta-G solvation = -28845.511481 eV Core-core repulsion = 24577.768358 eV Total energy + Delta-G solvation = -4267.743123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.33605 -40.86713 -40.11781 -38.60392 -38.25491 -36.07731 -35.58588 -34.96287 -33.26756 -32.46364 -30.43753 -29.62248 -28.10092 -27.94644 -26.03112 -25.44284 -24.01788 -22.69691 -21.40538 -21.13045 -20.76845 -19.91520 -19.69283 -18.71554 -17.77015 -17.56019 -17.19119 -16.91602 -16.63748 -16.37289 -16.12137 -15.83600 -15.62227 -15.53046 -15.24410 -15.07910 -14.73422 -14.59531 -14.09930 -13.88734 -13.72679 -13.67422 -13.49062 -13.30780 -13.20040 -13.10816 -13.02172 -12.86043 -12.52721 -12.38668 -12.10991 -11.85845 -11.79148 -11.49530 -11.45050 -11.01829 -10.90480 -10.35300 -10.20807 -9.99150 -9.57235 -9.27368 -8.45453 -5.93635 0.08678 1.07991 1.37466 1.42933 1.53514 1.56772 2.08191 2.09595 2.22727 2.31414 2.80003 3.01328 3.22391 3.53691 3.58754 3.78721 3.82853 3.91213 3.94839 4.25453 4.26816 4.30841 4.33104 4.48782 4.50995 4.58152 4.61184 4.66556 4.77015 4.89901 4.92610 5.02031 5.06465 5.26694 5.30680 5.42979 5.45430 5.48753 5.52709 5.91643 6.12605 6.41385 6.44333 6.55352 6.62349 6.68693 7.11289 7.14958 7.59137 8.14647 8.72104 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029659 B = 0.001730 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.841415 B =16179.150873 C =16383.788021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.083 3.917 3 H 0.094 0.906 4 N -0.676 5.676 5 C 0.068 3.932 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.574 5.574 9 C -0.332 4.332 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.991 3.009 14 H -0.274 1.274 15 H -0.270 1.270 16 H -0.272 1.272 17 C 0.166 3.834 18 H 0.069 0.931 19 C -0.157 4.157 20 N -0.693 5.693 21 C 0.597 3.403 22 O -0.577 6.577 23 C -0.099 4.099 24 C 0.065 3.935 25 N -0.517 5.517 26 C 0.400 3.600 27 O -0.443 6.443 28 N -0.432 5.432 29 C 0.063 3.937 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.349 0.651 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.415 0.585 42 H 0.217 0.783 43 H 0.428 0.572 44 H 0.093 0.907 45 H 0.110 0.890 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 5.206 26.971 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.027 4.027 3 H 0.112 0.888 4 N -0.309 5.309 5 C -0.065 4.065 6 C 0.225 3.775 7 O -0.510 6.510 8 N -0.212 5.212 9 C -0.462 4.462 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.815 3.185 14 H -0.199 1.199 15 H -0.196 1.196 16 H -0.198 1.198 17 C 0.061 3.939 18 H 0.087 0.913 19 C -0.216 4.216 20 N -0.347 5.347 21 C 0.384 3.616 22 O -0.458 6.458 23 C -0.215 4.215 24 C -0.090 4.090 25 N -0.246 5.246 26 C 0.100 3.900 27 O -0.247 6.247 28 N -0.125 5.125 29 C -0.078 4.078 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.169 0.831 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.231 0.769 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.255 0.745 42 H 0.234 0.766 43 H 0.290 0.710 44 H 0.112 0.888 45 H 0.128 0.872 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.606 4.107 27.689 28.548 hybrid contribution 0.154 0.206 -1.355 1.380 sum -5.452 4.313 26.333 27.236 Atomic orbital electron populations 1.22590 0.94873 1.03376 1.03698 1.21724 0.94542 0.97952 0.88497 0.88821 1.59944 1.58913 1.09257 1.02751 1.21544 1.01406 0.95174 0.88336 1.20951 0.83334 0.88026 0.85201 1.90501 1.56572 1.18433 1.85468 1.41935 1.58414 1.12609 1.08202 1.19690 1.42022 0.95915 0.88542 0.90401 1.26008 0.97314 0.96625 1.01343 1.69674 1.48795 1.09602 1.28046 0.84890 0.78149 0.78025 0.77395 1.19899 1.19568 1.19752 1.20679 0.97922 0.92631 0.82626 0.91317 1.22103 1.02282 0.95436 1.01754 1.45590 1.25982 1.56562 1.06537 1.16761 0.82777 0.79711 0.82360 1.90819 1.27355 1.42623 1.84993 1.20552 1.00554 1.12955 0.87400 1.23087 0.95503 0.95459 0.94913 1.70346 1.22460 1.26682 1.05097 1.20379 0.87955 0.96096 0.85565 1.84772 1.77884 1.48370 1.13712 1.45813 1.19041 1.38585 1.09053 1.22411 0.81652 1.00490 1.03263 0.89334 0.91874 0.91541 0.83075 0.90905 0.87863 0.76933 0.91353 0.90749 0.91713 0.93755 0.74510 0.76647 0.70990 0.88826 0.87164 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 8.68 71.98 0.62 -1.86 16 2 C 0.08 1.58 2.64 44.92 0.12 1.70 16 3 H 0.09 1.65 7.80 -2.39 -0.02 1.63 16 4 N -0.68 -19.05 5.23 -495.56 -2.59 -21.64 16 5 C 0.07 2.12 5.96 85.56 0.51 2.63 16 6 C 0.44 20.13 7.82 87.66 0.69 20.82 16 7 O -0.62 -33.88 15.78 -3.07 -0.05 -33.92 16 8 N -0.57 -28.83 5.29 -306.99 -1.62 -30.46 16 9 C -0.33 -18.70 9.68 84.04 0.81 -17.89 16 10 H 0.08 4.71 7.16 -2.91 -0.02 4.68 16 11 C -0.01 -0.70 5.50 84.92 0.47 -0.24 16 12 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 13 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 17 C 0.17 3.42 2.59 44.99 0.12 3.54 16 18 H 0.07 1.85 7.66 -2.39 -0.02 1.83 16 19 C -0.16 -3.43 8.86 71.98 0.64 -2.79 16 20 N -0.69 -10.87 4.97 -446.76 -2.22 -13.09 16 21 C 0.60 12.37 7.73 86.36 0.67 13.03 16 22 O -0.58 -16.17 14.54 -4.47 -0.07 -16.24 16 23 C -0.10 -1.77 6.92 39.80 0.28 -1.50 16 24 C 0.07 0.98 11.36 84.13 0.96 1.93 16 25 N -0.52 -9.76 11.22 -313.65 -3.52 -13.28 16 26 C 0.40 6.66 9.01 179.99 1.62 8.28 16 27 O -0.44 -4.90 13.52 -84.92 -1.15 -6.05 16 28 N -0.43 -7.30 3.20 -651.99 -2.09 -9.39 16 29 C 0.06 0.80 10.69 127.77 1.37 2.17 16 30 H 0.09 0.63 6.29 -2.39 -0.02 0.62 16 31 H 0.06 0.90 7.45 -2.38 -0.02 0.89 16 32 H 0.07 0.93 6.55 -2.39 -0.02 0.91 16 33 H 0.35 10.39 7.39 -89.70 -0.66 9.73 16 34 H 0.07 1.92 7.44 -2.39 -0.02 1.90 16 35 H 0.10 2.94 8.06 -2.39 -0.02 2.92 16 36 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 37 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 38 H 0.07 1.30 6.56 -2.39 -0.02 1.29 16 39 H 0.06 1.66 7.13 -2.38 -0.02 1.64 16 40 H 0.04 1.08 8.07 -2.38 -0.02 1.06 16 41 H 0.42 3.72 5.51 -92.71 -0.51 3.21 16 42 H 0.22 1.44 7.45 -2.91 -0.02 1.41 16 43 H 0.43 0.12 9.06 -74.06 -0.67 -0.55 16 44 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.11 0.90 8.12 -2.39 -0.02 0.88 16 46 H 0.09 1.56 6.43 -2.38 -0.02 1.54 16 Total: -1.00 -79.30 383.58 -3.63 -82.93 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: -1.50 Total: 35.34 kcal Atomic # 6 Polarization: 20.97 SS G_CDS: 8.86 Total: 29.82 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -11.76 Total: -136.66 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -1.26 Total: -56.21 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -79.30 -3.63 -82.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505670677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.841 kcal (2) G-P(sol) polarization free energy of solvation -79.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds