Wall clock time and date at job start Tue Mar 31 2020 22:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.37489 * 2 1 4 4 C 1.53999 * 110.32957 * 237.80609 * 2 1 3 5 5 N 1.47480 * 107.08844 * 242.41897 * 4 2 1 6 6 C 1.34777 * 127.03570 * 154.51713 * 5 4 2 7 7 O 1.21287 * 120.00008 * 180.02562 * 6 5 4 8 8 C 1.50695 * 120.00065 * 0.02562 * 6 5 4 9 9 H 1.09005 * 110.49067 * 42.70474 * 8 6 5 10 10 C 1.54098 * 110.55014 * 280.00289 * 8 6 5 11 11 N 1.47056 * 103.86466 * 241.40431 * 10 8 6 12 12 C 1.33948 * 109.17577 * 0.02562 * 11 10 8 13 13 O 1.21588 * 123.04183 * 180.02562 * 12 11 10 14 14 N 1.33945 * 113.91908 * 359.97438 * 12 11 10 15 15 C 1.48120 * 105.93344 * 334.77582 * 5 4 2 16 16 C 1.54601 * 103.41914 * 39.02184 * 15 5 4 17 17 H 1.09006 * 110.57321 * 81.16905 * 16 15 5 18 18 N 1.46892 * 110.98957 * 204.37392 * 16 15 5 19 19 C 1.46903 * 111.00418 * 268.65341 * 18 16 15 20 20 C 1.50697 * 109.47605 * 179.97438 * 19 18 16 21 21 O 1.21294 * 119.99943 * 0.02562 * 20 19 18 22 22 N 1.34779 * 120.00062 * 180.02562 * 20 19 18 23 23 C 1.37101 * 119.99607 * 180.02562 * 22 20 19 24 24 H 1.07997 * 120.00219 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99341 * 180.02562 * 23 22 20 26 26 N 1.31407 * 120.00178 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99699 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47079 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47540 * 119.99628 * 27 25 23 30 30 H 1.48500 * 109.46847 * 240.00053 * 27 25 23 31 31 H 1.08992 * 109.47177 * 180.73809 * 1 2 3 32 32 H 1.08999 * 109.47294 * 300.74053 * 1 2 3 33 33 H 1.09003 * 109.46574 * 60.73502 * 1 2 3 34 34 H 1.09001 * 109.91457 * 123.05332 * 4 2 1 35 35 H 1.08999 * 110.07318 * 1.87258 * 4 2 1 36 36 H 1.08998 * 110.55044 * 122.81015 * 10 8 6 37 37 H 1.09000 * 110.67594 * 0.05921 * 10 8 6 38 38 H 0.96996 * 125.41090 * 179.73319 * 11 10 8 39 39 H 0.97001 * 125.41137 * 180.02562 * 14 12 11 40 40 H 1.08996 * 110.66398 * 157.50585 * 15 5 4 41 41 H 1.09004 * 110.66464 * 280.62990 * 15 5 4 42 42 H 1.00904 * 110.99962 * 32.60840 * 18 16 15 43 43 H 1.08996 * 109.47277 * 300.00398 * 19 18 16 44 44 H 1.09005 * 109.46850 * 59.99812 * 19 18 16 45 45 H 0.96998 * 119.99789 * 0.02562 * 22 20 19 46 46 H 0.97008 * 120.00130 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0650 -0.7694 -1.2220 5 7 2.8276 -1.9225 -0.7083 6 6 3.0612 -3.0886 -1.3423 7 8 3.7090 -3.9566 -0.7962 8 6 2.5177 -3.3142 -2.7296 9 1 2.6543 -2.4232 -3.3424 10 6 1.0287 -3.7067 -2.6700 11 7 0.9942 -5.0499 -3.2674 12 6 2.2357 -5.4054 -3.6230 13 8 2.4962 -6.4728 -4.1437 14 7 3.1641 -4.4782 -3.3539 15 6 3.2788 -1.5392 0.6494 16 6 2.0671 -0.7723 1.2271 17 1 1.3173 -1.4684 1.6035 18 7 2.4878 0.1574 2.2836 19 6 2.4315 -0.4851 3.6035 20 6 2.8696 0.4968 4.6594 21 8 3.1963 1.6214 4.3436 22 7 2.8985 0.1254 5.9547 23 6 3.2967 1.0189 6.9152 24 1 3.5876 2.0202 6.6340 25 6 3.3270 0.6357 8.2505 26 7 2.9736 -0.5828 8.5926 27 14 3.8688 1.8533 9.5595 28 1 4.2121 3.1484 8.9191 29 1 2.7653 2.0586 10.5318 30 1 5.0602 1.3207 10.2680 31 1 -0.3633 -1.0275 0.0132 32 1 -0.3634 0.5253 0.8833 33 1 -0.3632 0.5024 -0.8966 34 1 2.7181 -0.1245 -1.8100 35 1 1.2355 -1.1174 -1.8376 36 1 0.4262 -3.0120 -3.2552 37 1 0.6800 -3.7380 -1.6377 38 1 0.1993 -5.5939 -3.3817 39 1 4.1122 -4.5612 -3.5413 40 1 3.4934 -2.4247 1.2477 41 1 4.1523 -0.8893 0.5953 42 1 3.4102 0.5221 2.0981 43 1 1.4103 -0.8070 3.8076 44 1 3.0943 -1.3503 3.6150 45 1 2.6376 -0.7741 6.2071 46 1 2.9951 -0.8505 9.5248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565775418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:12 Heat of formation + Delta-G solvation = -72.987158 kcal Electronic energy + Delta-G solvation = -29351.187664 eV Core-core repulsion = 25083.405669 eV Total energy + Delta-G solvation = -4267.781995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.79251 -40.21615 -38.59816 -37.94780 -36.57371 -34.88885 -33.86527 -33.46621 -32.73504 -31.27220 -30.40864 -28.65180 -26.79322 -26.31081 -24.61725 -23.81094 -22.49553 -22.20943 -20.63799 -20.04356 -19.28723 -18.27347 -18.03976 -17.88547 -16.82036 -16.59877 -16.31178 -16.14536 -15.55747 -15.30837 -14.95876 -14.57178 -14.51076 -14.37529 -14.24092 -13.87523 -13.83454 -13.74553 -13.48577 -13.30014 -13.14426 -12.79362 -12.41596 -12.29608 -12.25206 -11.73393 -11.57934 -11.32629 -11.23010 -11.08314 -10.97134 -10.74131 -10.56402 -10.37485 -10.26479 -9.85616 -9.56459 -9.36465 -9.18365 -8.54478 -8.18243 -8.01045 -6.45855 -3.86928 1.97105 2.18520 2.46321 2.81717 3.13495 3.24561 3.31357 3.47264 3.68600 3.79038 3.84586 3.98478 4.17448 4.25589 4.29243 4.46943 4.58170 4.67023 4.84167 4.88127 4.95024 5.04615 5.08401 5.15910 5.21112 5.26664 5.43882 5.49553 5.56007 5.57835 5.71967 5.78635 5.89390 5.98041 6.06716 6.21470 6.53362 6.68269 6.89487 7.04406 7.06297 7.46719 7.51507 7.63825 8.01560 8.19429 8.55832 9.13379 9.49224 9.99834 10.71745 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.001968 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.866754 B =14222.432075 C =14836.016250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.099 0.901 4 C 0.098 3.902 5 N -0.614 5.614 6 C 0.519 3.481 7 O -0.520 6.520 8 C 0.108 3.892 9 H 0.117 0.883 10 C 0.105 3.895 11 N -0.738 5.738 12 C 0.706 3.294 13 O -0.582 6.582 14 N -0.715 5.715 15 C 0.073 3.927 16 C 0.080 3.920 17 H 0.092 0.908 18 N -0.651 5.651 19 C 0.048 3.952 20 C 0.440 3.560 21 O -0.584 6.584 22 N -0.562 5.562 23 C -0.300 4.300 24 H 0.104 0.896 25 C 0.022 3.978 26 N -0.900 5.900 27 Si 0.930 3.070 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.434 0.566 39 H 0.435 0.565 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.353 0.647 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 -3.019 -23.815 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.117 0.883 4 C -0.025 4.025 5 N -0.349 5.349 6 C 0.304 3.696 7 O -0.395 6.395 8 C -0.003 4.003 9 H 0.135 0.865 10 C -0.021 4.021 11 N -0.402 5.402 12 C 0.405 3.595 13 O -0.459 6.459 14 N -0.377 5.377 15 C -0.051 4.051 16 C -0.032 4.032 17 H 0.110 0.890 18 N -0.283 5.283 19 C -0.084 4.084 20 C 0.225 3.775 21 O -0.468 6.468 22 N -0.199 5.199 23 C -0.429 4.429 24 H 0.122 0.878 25 C -0.180 4.180 26 N -0.541 5.541 27 Si 0.757 3.243 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.276 0.724 39 H 0.278 0.722 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.173 0.827 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.226 0.774 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.767 -3.155 -23.780 24.925 hybrid contribution 0.943 -0.658 0.933 1.481 sum -5.824 -3.813 -22.848 23.885 Atomic orbital electron populations 1.21799 0.93636 1.01681 1.02614 1.22096 0.96824 1.00396 0.92234 0.88308 1.22430 0.95521 0.87187 0.97382 1.48690 1.53672 1.14587 1.17949 1.20396 0.80962 0.80813 0.87384 1.90795 1.39493 1.42324 1.66861 1.21796 0.93090 0.92634 0.92749 0.86526 1.22246 0.93542 0.85520 1.00817 1.45052 1.09100 1.19327 1.66721 1.15852 0.81548 0.83369 0.78747 1.91018 1.82169 1.22916 1.49804 1.44843 1.10667 1.17208 1.64993 1.23370 0.98357 1.00641 0.82740 1.22756 0.95828 0.92835 0.91790 0.89018 1.60178 1.34506 1.33771 0.99804 1.21754 1.01818 0.95595 0.89263 1.19751 0.85201 0.89038 0.83517 1.90527 1.53691 1.21354 1.81276 1.41876 1.58375 1.14786 1.04828 1.19750 1.41124 0.96123 0.85928 0.87815 1.25281 0.97446 0.96919 0.98333 1.69618 1.48044 1.17615 1.18872 0.85795 0.78144 0.80263 0.80111 1.19193 1.20719 1.20754 0.92917 0.91283 0.92496 0.90843 0.90487 0.88467 0.89398 0.72418 0.72238 0.89616 0.90418 0.82678 0.89427 0.93634 0.77440 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.90 37.16 0.33 -0.54 16 2 C -0.10 -0.67 3.34 -89.25 -0.30 -0.97 16 3 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 4 C 0.10 0.48 6.25 -2.98 -0.02 0.46 16 5 N -0.61 -4.84 3.29 -169.98 -0.56 -5.40 16 6 C 0.52 4.86 7.02 -10.99 -0.08 4.78 16 7 O -0.52 -7.42 16.77 5.55 0.09 -7.33 16 8 C 0.11 0.65 3.39 -68.21 -0.23 0.42 16 9 H 0.12 0.33 7.89 -51.93 -0.41 -0.08 16 10 C 0.10 0.45 7.06 -3.17 -0.02 0.43 16 11 N -0.74 -5.09 6.37 -64.70 -0.41 -5.50 16 12 C 0.71 7.65 8.92 -88.40 -0.79 6.87 16 13 O -0.58 -8.89 18.05 5.29 0.10 -8.79 16 14 N -0.71 -6.16 5.60 -59.33 -0.33 -6.49 16 15 C 0.07 0.71 6.66 -2.31 -0.02 0.70 16 16 C 0.08 0.77 2.92 -66.02 -0.19 0.58 16 17 H 0.09 0.91 7.54 -51.93 -0.39 0.52 16 18 N -0.65 -8.82 5.95 -106.21 -0.63 -9.45 16 19 C 0.05 0.77 6.03 -4.98 -0.03 0.74 16 20 C 0.44 9.84 7.82 -10.99 -0.09 9.75 16 21 O -0.58 -15.10 15.78 5.55 0.09 -15.01 16 22 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 16 23 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 24 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 27 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 28 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 30 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 31 H 0.05 0.29 8.13 -51.93 -0.42 -0.13 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.19 6.68 -51.93 -0.35 -0.16 16 36 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.09 0.39 7.73 -51.93 -0.40 -0.01 16 38 H 0.43 2.21 8.96 -40.82 -0.37 1.84 16 39 H 0.43 3.50 8.96 -40.82 -0.37 3.14 16 40 H 0.09 1.00 7.85 -51.93 -0.41 0.59 16 41 H 0.08 0.75 7.78 -51.93 -0.40 0.35 16 42 H 0.35 4.98 7.92 -39.29 -0.31 4.67 16 43 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -37.25 384.15 -8.51 -45.76 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -6.61 Total: 12.67 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: -1.67 Total: 15.38 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -1.27 Total: -64.15 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: 0.28 Total: -31.13 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.25 -8.51 -45.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565775418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.232 kcal (2) G-P(sol) polarization free energy of solvation -37.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds