Wall clock time and date at job start Tue Mar 31 2020 22:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.37489 * 2 1 4 4 C 1.53999 * 110.32957 * 237.80609 * 2 1 3 5 5 N 1.47480 * 107.08844 * 242.41897 * 4 2 1 6 6 C 1.34777 * 127.03570 * 154.51713 * 5 4 2 7 7 O 1.21287 * 120.00008 * 180.02562 * 6 5 4 8 8 C 1.50695 * 120.00065 * 0.02562 * 6 5 4 9 9 H 1.09005 * 110.49067 * 42.70474 * 8 6 5 10 10 C 1.54098 * 110.55014 * 280.00289 * 8 6 5 11 11 N 1.47056 * 103.86466 * 241.40431 * 10 8 6 12 12 C 1.33948 * 109.17577 * 0.02562 * 11 10 8 13 13 O 1.21588 * 123.04183 * 180.02562 * 12 11 10 14 14 N 1.33945 * 113.91908 * 359.97438 * 12 11 10 15 15 C 1.48120 * 105.93344 * 334.77582 * 5 4 2 16 16 C 1.54601 * 103.41914 * 39.02184 * 15 5 4 17 17 H 1.09006 * 110.57321 * 81.16905 * 16 15 5 18 18 N 1.46892 * 110.98957 * 204.37392 * 16 15 5 19 19 C 1.46903 * 111.00418 * 268.65341 * 18 16 15 20 20 C 1.50697 * 109.47605 * 179.97438 * 19 18 16 21 21 O 1.21294 * 119.99943 * 0.02562 * 20 19 18 22 22 N 1.34779 * 120.00062 * 180.02562 * 20 19 18 23 23 C 1.37101 * 119.99607 * 180.02562 * 22 20 19 24 24 H 1.07997 * 120.00219 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99341 * 180.02562 * 23 22 20 26 26 N 1.31407 * 120.00178 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99699 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47079 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47540 * 119.99628 * 27 25 23 30 30 H 1.48500 * 109.46847 * 240.00053 * 27 25 23 31 31 H 1.08992 * 109.47177 * 180.73809 * 1 2 3 32 32 H 1.08999 * 109.47294 * 300.74053 * 1 2 3 33 33 H 1.09003 * 109.46574 * 60.73502 * 1 2 3 34 34 H 1.09001 * 109.91457 * 123.05332 * 4 2 1 35 35 H 1.08999 * 110.07318 * 1.87258 * 4 2 1 36 36 H 1.08998 * 110.55044 * 122.81015 * 10 8 6 37 37 H 1.09000 * 110.67594 * 0.05921 * 10 8 6 38 38 H 0.96996 * 125.41090 * 179.73319 * 11 10 8 39 39 H 0.97001 * 125.41137 * 180.02562 * 14 12 11 40 40 H 1.08996 * 110.66398 * 157.50585 * 15 5 4 41 41 H 1.09004 * 110.66464 * 280.62990 * 15 5 4 42 42 H 1.00904 * 110.99962 * 32.60840 * 18 16 15 43 43 H 1.08996 * 109.47277 * 300.00398 * 19 18 16 44 44 H 1.09005 * 109.46850 * 59.99812 * 19 18 16 45 45 H 0.96998 * 119.99789 * 0.02562 * 22 20 19 46 46 H 0.97008 * 120.00130 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0650 -0.7694 -1.2220 5 7 2.8276 -1.9225 -0.7083 6 6 3.0612 -3.0886 -1.3423 7 8 3.7090 -3.9566 -0.7962 8 6 2.5177 -3.3142 -2.7296 9 1 2.6543 -2.4232 -3.3424 10 6 1.0287 -3.7067 -2.6700 11 7 0.9942 -5.0499 -3.2674 12 6 2.2357 -5.4054 -3.6230 13 8 2.4962 -6.4728 -4.1437 14 7 3.1641 -4.4782 -3.3539 15 6 3.2788 -1.5392 0.6494 16 6 2.0671 -0.7723 1.2271 17 1 1.3173 -1.4684 1.6035 18 7 2.4878 0.1574 2.2836 19 6 2.4315 -0.4851 3.6035 20 6 2.8696 0.4968 4.6594 21 8 3.1963 1.6214 4.3436 22 7 2.8985 0.1254 5.9547 23 6 3.2967 1.0189 6.9152 24 1 3.5876 2.0202 6.6340 25 6 3.3270 0.6357 8.2505 26 7 2.9736 -0.5828 8.5926 27 14 3.8688 1.8533 9.5595 28 1 4.2121 3.1484 8.9191 29 1 2.7653 2.0586 10.5318 30 1 5.0602 1.3207 10.2680 31 1 -0.3633 -1.0275 0.0132 32 1 -0.3634 0.5253 0.8833 33 1 -0.3632 0.5024 -0.8966 34 1 2.7181 -0.1245 -1.8100 35 1 1.2355 -1.1174 -1.8376 36 1 0.4262 -3.0120 -3.2552 37 1 0.6800 -3.7380 -1.6377 38 1 0.1993 -5.5939 -3.3817 39 1 4.1122 -4.5612 -3.5413 40 1 3.4934 -2.4247 1.2477 41 1 4.1523 -0.8893 0.5953 42 1 3.4102 0.5221 2.0981 43 1 1.4103 -0.8070 3.8076 44 1 3.0943 -1.3503 3.6150 45 1 2.6376 -0.7741 6.2071 46 1 2.9951 -0.8505 9.5248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565775418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:11 Heat of formation + Delta-G solvation = -107.343608 kcal Electronic energy + Delta-G solvation = -29352.677472 eV Core-core repulsion = 25083.405669 eV Total energy + Delta-G solvation = -4269.271803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.42740 -40.96368 -40.10767 -39.04062 -37.37846 -36.21744 -35.54993 -34.04152 -33.47092 -33.21816 -31.13146 -29.56268 -27.69072 -27.28074 -25.94341 -24.69163 -23.24849 -22.85407 -21.48060 -20.95712 -20.62089 -19.90877 -18.91464 -18.66083 -17.75189 -17.50238 -17.14739 -17.04673 -16.86456 -16.38367 -16.13304 -15.92766 -15.65368 -15.30994 -15.12344 -15.08267 -14.56667 -14.52853 -14.29910 -14.17800 -13.92701 -13.74502 -13.51846 -13.39242 -13.19949 -12.96004 -12.89641 -12.82159 -12.40861 -12.11714 -11.96456 -11.85266 -11.63001 -11.60449 -11.51537 -11.33906 -10.60417 -10.34452 -10.02237 -9.90591 -9.85936 -9.29467 -8.47316 -5.95992 1.31447 1.36422 1.41945 1.52861 1.56131 1.87679 2.04525 2.07753 2.28745 2.87412 3.00796 3.20109 3.25506 3.27460 3.48482 3.67209 3.78687 3.93628 3.98144 4.26356 4.28165 4.30168 4.34616 4.42894 4.54471 4.59130 4.60382 4.65554 4.79443 4.80826 4.88900 4.97149 5.04401 5.26038 5.40474 5.42606 5.57176 5.87022 5.90210 6.09352 6.17394 6.25086 6.35363 6.44281 6.58906 6.95810 7.12094 7.48334 7.55840 8.10337 8.70226 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022451 B = 0.001968 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.866754 B =14222.432075 C =14836.016250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.091 0.909 4 C 0.099 3.901 5 N -0.606 5.606 6 C 0.516 3.484 7 O -0.581 6.581 8 C 0.112 3.888 9 H 0.163 0.837 10 C 0.103 3.897 11 N -0.729 5.729 12 C 0.694 3.306 13 O -0.639 6.639 14 N -0.716 5.716 15 C 0.074 3.926 16 C 0.082 3.918 17 H 0.092 0.908 18 N -0.659 5.659 19 C 0.064 3.936 20 C 0.439 3.561 21 O -0.621 6.621 22 N -0.575 5.575 23 C -0.331 4.331 24 H 0.081 0.919 25 C -0.015 4.015 26 N -0.921 5.921 27 Si 0.993 3.007 28 H -0.272 1.272 29 H -0.271 1.271 30 H -0.273 1.273 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.148 0.852 37 H 0.090 0.910 38 H 0.441 0.559 39 H 0.434 0.566 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.348 0.652 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.548 -1.913 -25.486 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.109 0.891 4 C -0.023 4.023 5 N -0.340 5.340 6 C 0.304 3.696 7 O -0.460 6.460 8 C 0.003 3.997 9 H 0.180 0.820 10 C -0.021 4.021 11 N -0.392 5.392 12 C 0.393 3.607 13 O -0.521 6.521 14 N -0.377 5.377 15 C -0.051 4.051 16 C -0.029 4.029 17 H 0.110 0.890 18 N -0.290 5.290 19 C -0.069 4.069 20 C 0.226 3.774 21 O -0.507 6.507 22 N -0.212 5.212 23 C -0.461 4.461 24 H 0.099 0.901 25 C -0.215 4.215 26 N -0.562 5.562 27 Si 0.817 3.183 28 H -0.196 1.196 29 H -0.196 1.196 30 H -0.198 1.198 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.166 0.834 37 H 0.109 0.891 38 H 0.285 0.715 39 H 0.276 0.724 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.167 0.833 43 H 0.123 0.877 44 H 0.078 0.922 45 H 0.229 0.771 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.497 -2.000 -25.458 26.913 hybrid contribution 1.454 -0.946 1.442 2.256 sum -7.043 -2.946 -24.016 25.201 Atomic orbital electron populations 1.21789 0.92615 1.02381 1.02652 1.22068 0.97571 0.99878 0.91531 0.89065 1.22673 0.96838 0.86079 0.96688 1.48705 1.53225 1.15048 1.16985 1.21079 0.80049 0.80121 0.88394 1.90778 1.42351 1.44342 1.68490 1.22136 0.93622 0.93272 0.90704 0.82018 1.22626 0.92773 0.84853 1.01877 1.45052 1.07978 1.20537 1.65604 1.16195 0.82894 0.82960 0.78694 1.90965 1.83286 1.25335 1.52470 1.44908 1.10596 1.17791 1.64407 1.23192 0.98469 0.99508 0.83953 1.22820 0.95654 0.92705 0.91730 0.88956 1.60227 1.34287 1.34902 0.99601 1.21590 1.02739 0.93993 0.88568 1.20841 0.83127 0.89518 0.83876 1.90494 1.54808 1.23461 1.81939 1.41965 1.59159 1.14621 1.05455 1.19707 1.43028 0.95986 0.87366 0.90134 1.26060 0.97031 0.98658 0.99740 1.69680 1.48250 1.18708 1.19608 0.84865 0.78136 0.77855 0.77454 1.19607 1.19638 1.19805 0.91787 0.93847 0.90001 0.88731 0.86525 0.83402 0.89133 0.71536 0.72418 0.92119 0.90575 0.83251 0.87675 0.92150 0.77072 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.90 71.98 0.64 -0.56 16 2 C -0.09 -0.99 3.34 -9.91 -0.03 -1.02 16 3 H 0.09 1.19 8.05 -2.39 -0.02 1.18 16 4 C 0.10 0.51 6.25 86.53 0.54 1.05 16 5 N -0.61 -7.93 3.29 -810.09 -2.67 -10.60 16 6 C 0.52 8.61 7.02 87.66 0.62 9.23 16 7 O -0.58 -16.64 16.77 -3.05 -0.05 -16.69 16 8 C 0.11 0.94 3.39 44.51 0.15 1.09 16 9 H 0.16 -0.03 7.89 -2.38 -0.02 -0.05 16 10 C 0.10 0.42 7.06 86.64 0.61 1.03 16 11 N -0.73 -8.31 6.37 -477.35 -3.04 -11.35 16 12 C 0.69 14.50 8.92 179.57 1.60 16.11 16 13 O -0.64 -20.02 18.05 -3.99 -0.07 -20.09 16 14 N -0.72 -11.39 5.60 -460.35 -2.58 -13.96 16 15 C 0.07 1.38 6.66 86.61 0.58 1.95 16 16 C 0.08 1.46 2.92 46.01 0.13 1.59 16 17 H 0.09 1.66 7.54 -2.38 -0.02 1.64 16 18 N -0.66 -17.46 5.95 -489.92 -2.92 -20.38 16 19 C 0.06 2.01 6.03 85.56 0.52 2.52 16 20 C 0.44 20.01 7.82 87.66 0.69 20.70 16 21 O -0.62 -32.90 15.78 -3.07 -0.05 -32.95 16 22 N -0.57 -28.92 5.29 -306.98 -1.62 -30.54 16 23 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 24 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 25 C -0.02 -0.81 5.50 84.93 0.47 -0.35 16 26 N -0.92 -49.56 13.05 21.66 0.28 -49.28 16 27 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 29 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 30 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 31 H 0.06 0.43 8.13 -2.39 -0.02 0.41 16 32 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.12 -0.25 6.68 -2.39 -0.02 -0.27 16 36 H 0.15 -0.75 8.14 -2.39 -0.02 -0.77 16 37 H 0.09 0.41 7.73 -2.39 -0.02 0.39 16 38 H 0.44 3.58 8.96 -92.71 -0.83 2.74 16 39 H 0.43 6.86 8.96 -92.71 -0.83 6.03 16 40 H 0.06 1.44 7.85 -2.39 -0.02 1.42 16 41 H 0.08 1.44 7.78 -2.39 -0.02 1.42 16 42 H 0.35 9.81 7.92 -89.69 -0.71 9.10 16 43 H 0.11 2.99 8.08 -2.39 -0.02 2.97 16 44 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 46 H 0.28 13.94 8.31 -92.70 -0.77 13.17 16 Total: -1.00 -86.89 384.15 -5.41 -92.30 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -2.04 Total: 33.34 kcal Atomic # 6 Polarization: 28.29 SS G_CDS: 7.32 Total: 35.61 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -12.55 Total: -136.11 kcal Atomic # 8 Polarization: -69.56 SS G_CDS: -0.17 Total: -69.73 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -86.89 -5.41 -92.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565775418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.044 kcal (2) G-P(sol) polarization free energy of solvation -86.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds