Wall clock time and date at job start Tue Mar 31 2020 22:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46958 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99880 * 2 1 3 5 5 C 1.52996 * 109.47132 * 184.99872 * 4 2 1 6 6 N 1.46498 * 109.47370 * 180.02562 * 5 4 2 7 7 C 1.36937 * 120.00367 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99960 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00127 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99840 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99758 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.46912 * 90.00059 * 11 9 7 13 13 H 1.48502 * 109.46917 * 209.99514 * 11 9 7 14 14 H 1.48491 * 109.47262 * 329.99900 * 11 9 7 15 15 N 1.46506 * 109.47138 * 240.00284 * 2 1 3 16 16 C 1.34776 * 119.99706 * 84.99343 * 15 2 1 17 17 O 1.21505 * 120.00188 * 0.02562 * 16 15 2 18 18 C 1.48178 * 119.99588 * 179.97438 * 16 15 2 19 19 C 1.39101 * 119.67021 * 179.97438 * 18 16 15 20 20 C 1.39721 * 118.91790 * 180.02562 * 19 18 16 21 21 C 1.48368 * 120.87102 * 179.97438 * 20 19 18 22 22 C 1.39352 * 120.12041 * 359.71935 * 21 20 19 23 23 C 1.38017 * 119.87078 * 179.79233 * 22 21 20 24 24 C 1.38316 * 120.12735 * 0.48510 * 23 22 21 25 25 C 1.38331 * 120.24762 * 359.74673 * 24 23 22 26 26 C 1.38018 * 120.11696 * 0.02562 * 25 24 23 27 27 C 1.39736 * 118.25669 * 359.97438 * 20 19 18 28 28 C 1.38315 * 119.21512 * 0.02600 * 27 20 19 29 29 N 1.31580 * 121.02558 * 359.97136 * 28 27 20 30 30 H 1.08997 * 109.47042 * 59.99975 * 1 2 3 31 31 H 1.08999 * 109.46536 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46972 * 299.99434 * 1 2 3 33 33 H 1.09002 * 109.47141 * 305.00220 * 4 2 1 34 34 H 1.08998 * 109.46882 * 65.00158 * 4 2 1 35 35 H 1.09002 * 109.47391 * 300.00195 * 5 4 2 36 36 H 1.08998 * 109.47004 * 60.00360 * 5 4 2 37 37 H 0.97001 * 119.99967 * 0.02562 * 6 5 4 38 38 H 0.97002 * 119.99600 * 180.02562 * 10 9 7 39 39 H 0.96994 * 119.99535 * 264.99907 * 15 2 1 40 40 H 1.07999 * 120.53685 * 0.02562 * 19 18 16 41 41 H 1.07994 * 120.06555 * 0.02562 * 22 21 20 42 42 H 1.08005 * 119.93705 * 180.25415 * 23 22 21 43 43 H 1.08002 * 119.88144 * 179.76364 * 24 23 22 44 44 H 1.08000 * 119.94204 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.05771 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.39126 * 180.02562 * 27 20 19 47 47 H 1.07992 * 119.49081 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0534 -1.3043 2.5094 7 6 5.3954 -1.3403 2.7793 8 1 6.0937 -0.8589 2.1108 9 6 5.8582 -1.9947 3.9127 10 7 7.1481 -2.0288 4.1723 11 14 4.6502 -2.8268 5.0693 12 1 4.4462 -4.2346 4.6429 13 1 5.1915 -2.8019 6.4519 14 1 3.3527 -2.1055 5.0326 15 7 2.0184 -0.6906 -1.1962 16 6 2.1470 -0.0181 -2.3572 17 8 1.8583 1.1609 -2.4116 18 6 2.6415 -0.7165 -3.5669 19 6 2.7710 -0.0160 -4.7617 20 6 3.2383 -0.6902 -5.8928 21 6 3.3926 0.0144 -7.1894 22 6 3.0651 1.3648 -7.2947 23 6 3.2147 2.0163 -8.5023 24 6 3.6791 1.3289 -9.6090 25 6 4.0011 -0.0129 -9.5114 26 6 3.8599 -0.6732 -8.3077 27 6 3.5564 -2.0454 -5.7709 28 6 3.3990 -2.6682 -4.5460 29 7 2.9565 -2.0046 -3.4996 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6055 -0.2617 2.1370 34 1 1.7518 -1.7714 1.2055 35 1 3.9995 -1.0727 0.4258 36 1 3.8532 0.4370 1.3573 37 1 3.4262 -1.7364 3.1101 38 1 7.4714 -2.4864 4.9641 39 1 2.2491 -1.6317 -1.1527 40 1 2.5147 1.0318 -4.8141 41 1 2.6986 1.9015 -6.4322 42 1 2.9651 3.0639 -8.5841 43 1 3.7911 1.8416 -10.5530 44 1 4.3629 -0.5449 -10.3789 45 1 4.1112 -1.7209 -8.2327 46 1 3.9208 -2.5998 -6.6231 47 1 3.6439 -3.7153 -4.4467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568693855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:21 Heat of formation + Delta-G solvation = 32.909922 kcal Electronic energy + Delta-G solvation = -27492.240574 eV Core-core repulsion = 23639.899884 eV Total energy + Delta-G solvation = -3852.340690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.99418 -39.69193 -38.86944 -36.61483 -34.53615 -34.11452 -32.27298 -31.78734 -31.23295 -30.60417 -29.94237 -28.25105 -25.34364 -24.52531 -23.88098 -22.79163 -22.07878 -21.39379 -20.89511 -20.37042 -18.48245 -17.59909 -17.35218 -16.82693 -16.14410 -15.95540 -15.69360 -15.29006 -14.92714 -14.65934 -14.53346 -14.23116 -14.17773 -13.89995 -13.78003 -13.60248 -13.51422 -13.29992 -13.18687 -12.60234 -12.53112 -12.43652 -12.02501 -11.73079 -11.50160 -11.32901 -11.19745 -10.88812 -10.78720 -10.72053 -10.48685 -10.34625 -10.11963 -9.75397 -9.56605 -9.52615 -9.40617 -9.02108 -8.85040 -8.80008 -7.20204 -5.73854 -3.09325 0.10184 0.51106 0.95137 1.44153 2.64244 3.04258 3.36296 3.39110 3.41563 3.46748 3.74748 3.90285 4.03823 4.25225 4.49359 4.53872 4.61400 4.63306 4.67886 4.71942 4.80895 4.94510 5.09128 5.12856 5.18487 5.27266 5.29656 5.39590 5.53467 5.58134 5.58939 5.64260 5.65966 5.67258 5.82562 5.95876 5.96324 5.99976 6.05787 6.14526 6.18320 6.23770 6.24956 6.49414 6.50410 6.76251 6.79461 7.36037 7.65480 8.02927 8.17172 8.45085 9.24345 9.96528 10.16578 11.44669 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.002085 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.158211 B =13427.110576 C =14248.052636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.242 4.242 8 H 0.089 0.911 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.887 3.113 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.697 5.697 16 C 0.572 3.428 17 O -0.537 6.537 18 C 0.089 3.911 19 C -0.107 4.107 20 C -0.007 4.007 21 C -0.054 4.054 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.102 4.102 27 C -0.147 4.147 28 C 0.107 3.893 29 N -0.457 5.457 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.026 0.974 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.413 0.587 40 H 0.150 0.850 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.142 0.858 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.789 2.480 -29.010 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.110 0.890 4 C -0.177 4.177 5 C 0.030 3.970 6 N -0.402 5.402 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.194 4.194 10 N -0.583 5.583 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.203 1.203 15 N -0.348 5.348 16 C 0.356 3.644 17 O -0.414 6.414 18 C -0.049 4.049 19 C -0.128 4.128 20 C -0.015 4.015 21 C -0.054 4.054 22 C -0.119 4.119 23 C -0.136 4.136 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.167 4.167 28 C -0.052 4.052 29 N -0.168 5.168 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.249 0.751 40 H 0.168 0.832 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.160 0.840 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.862 2.956 -28.190 31.126 hybrid contribution -0.391 -0.752 0.103 0.854 sum -13.253 2.204 -28.087 31.134 Atomic orbital electron populations 1.22166 0.95208 1.02129 1.02423 1.21040 0.93736 0.97832 0.83527 0.89001 1.22114 0.98130 1.00930 0.96545 1.20627 0.90157 0.95984 0.90267 1.42707 1.05282 1.66240 1.26003 1.19068 0.82208 1.29193 1.06763 0.89314 1.24693 0.95644 1.00789 0.98254 1.69710 1.11721 1.48275 1.28611 0.86508 0.80921 0.79791 0.81073 1.21099 1.21764 1.20348 1.45965 1.65031 1.14950 1.08832 1.17814 0.77875 0.85979 0.82731 1.90767 1.50882 1.15000 1.84771 1.21129 0.99270 0.90514 0.94033 1.22161 0.97351 1.01889 0.91357 1.19106 0.96376 0.93381 0.92639 1.18647 1.01143 0.93760 0.91884 1.21358 0.98587 0.93580 0.98357 1.21152 0.99513 1.00255 0.92669 1.21306 0.98327 0.94649 0.98766 1.21122 1.00237 0.94881 0.97584 1.21245 0.98614 1.00024 0.92150 1.22423 1.00104 0.94414 0.99777 1.22756 0.94616 1.00377 0.87486 1.67555 1.09265 1.07732 1.32291 0.92278 0.92440 0.91402 0.90161 0.91264 0.95361 0.95592 0.80717 0.93104 0.75066 0.83246 0.85220 0.85481 0.85774 0.85587 0.85467 0.84024 0.81612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.48 37.16 0.35 -1.48 16 2 C 0.14 1.93 2.57 -67.93 -0.17 1.76 16 3 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 4 C -0.14 -2.07 4.87 -26.73 -0.13 -2.20 16 5 C 0.16 3.11 6.15 -4.04 -0.02 3.08 16 6 N -0.76 -18.41 5.41 -59.91 -0.32 -18.73 16 7 C -0.24 -7.07 10.47 -15.06 -0.16 -7.22 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 9 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 10 N -0.94 -29.91 13.97 55.49 0.78 -29.13 16 11 Si 0.89 22.38 27.74 -169.99 -4.71 17.67 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 14 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 15 N -0.70 -9.55 4.52 -54.64 -0.25 -9.80 16 16 C 0.57 8.38 7.78 -12.18 -0.09 8.28 16 17 O -0.54 -8.98 15.98 5.36 0.09 -8.89 16 18 C 0.09 1.15 6.75 -83.06 -0.56 0.59 16 19 C -0.11 -1.22 9.02 -38.71 -0.35 -1.57 16 20 C -0.01 -0.07 5.91 -104.61 -0.62 -0.69 16 21 C -0.05 -0.47 5.88 -104.90 -0.62 -1.08 16 22 C -0.10 -0.83 9.45 -39.25 -0.37 -1.20 16 23 C -0.12 -0.81 10.03 -39.63 -0.40 -1.21 16 24 C -0.11 -0.69 10.04 -39.52 -0.40 -1.09 16 25 C -0.12 -0.74 10.03 -39.63 -0.40 -1.14 16 26 C -0.10 -0.72 9.45 -39.25 -0.37 -1.09 16 27 C -0.15 -1.20 9.51 -38.99 -0.37 -1.57 16 28 C 0.11 0.99 11.17 -17.63 -0.20 0.79 16 29 N -0.46 -5.57 9.53 -9.88 -0.09 -5.66 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.58 7.75 -51.93 -0.40 0.18 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.36 8.43 5.53 -40.82 -0.23 8.21 16 38 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 39 H 0.41 5.44 7.93 -40.82 -0.32 5.11 16 40 H 0.15 1.62 5.92 -52.49 -0.31 1.31 16 41 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 42 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 45 H 0.13 0.63 6.29 -52.49 -0.33 0.30 16 46 H 0.14 0.71 6.33 -52.49 -0.33 0.38 16 47 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 393.00 15.07 5.92 5.92 Total: -1.00 -35.44 393.00 -10.04 -45.47 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.47 Total: 10.21 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -4.97 Total: -7.07 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 0.11 Total: -63.32 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.44 -10.04 -45.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568693855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.382 kcal (2) G-P(sol) polarization free energy of solvation -35.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds