Wall clock time and date at job start Tue Mar 31 2020 22:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46958 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99880 * 2 1 3 5 5 C 1.52996 * 109.47132 * 184.99872 * 4 2 1 6 6 N 1.46498 * 109.47370 * 180.02562 * 5 4 2 7 7 C 1.36937 * 120.00367 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99960 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00127 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99840 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99758 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.46912 * 90.00059 * 11 9 7 13 13 H 1.48502 * 109.46917 * 209.99514 * 11 9 7 14 14 H 1.48491 * 109.47262 * 329.99900 * 11 9 7 15 15 N 1.46506 * 109.47138 * 240.00284 * 2 1 3 16 16 C 1.34776 * 119.99706 * 84.99343 * 15 2 1 17 17 O 1.21505 * 120.00188 * 0.02562 * 16 15 2 18 18 C 1.48178 * 119.99588 * 179.97438 * 16 15 2 19 19 C 1.39101 * 119.67021 * 179.97438 * 18 16 15 20 20 C 1.39721 * 118.91790 * 180.02562 * 19 18 16 21 21 C 1.48368 * 120.87102 * 179.97438 * 20 19 18 22 22 C 1.39352 * 120.12041 * 359.71935 * 21 20 19 23 23 C 1.38017 * 119.87078 * 179.79233 * 22 21 20 24 24 C 1.38316 * 120.12735 * 0.48510 * 23 22 21 25 25 C 1.38331 * 120.24762 * 359.74673 * 24 23 22 26 26 C 1.38018 * 120.11696 * 0.02562 * 25 24 23 27 27 C 1.39736 * 118.25669 * 359.97438 * 20 19 18 28 28 C 1.38315 * 119.21512 * 0.02600 * 27 20 19 29 29 N 1.31580 * 121.02558 * 359.97136 * 28 27 20 30 30 H 1.08997 * 109.47042 * 59.99975 * 1 2 3 31 31 H 1.08999 * 109.46536 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46972 * 299.99434 * 1 2 3 33 33 H 1.09002 * 109.47141 * 305.00220 * 4 2 1 34 34 H 1.08998 * 109.46882 * 65.00158 * 4 2 1 35 35 H 1.09002 * 109.47391 * 300.00195 * 5 4 2 36 36 H 1.08998 * 109.47004 * 60.00360 * 5 4 2 37 37 H 0.97001 * 119.99967 * 0.02562 * 6 5 4 38 38 H 0.97002 * 119.99600 * 180.02562 * 10 9 7 39 39 H 0.96994 * 119.99535 * 264.99907 * 15 2 1 40 40 H 1.07999 * 120.53685 * 0.02562 * 19 18 16 41 41 H 1.07994 * 120.06555 * 0.02562 * 22 21 20 42 42 H 1.08005 * 119.93705 * 180.25415 * 23 22 21 43 43 H 1.08002 * 119.88144 * 179.76364 * 24 23 22 44 44 H 1.08000 * 119.94204 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.05771 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.39126 * 180.02562 * 27 20 19 47 47 H 1.07992 * 119.49081 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0534 -1.3043 2.5094 7 6 5.3954 -1.3403 2.7793 8 1 6.0937 -0.8589 2.1108 9 6 5.8582 -1.9947 3.9127 10 7 7.1481 -2.0288 4.1723 11 14 4.6502 -2.8268 5.0693 12 1 4.4462 -4.2346 4.6429 13 1 5.1915 -2.8019 6.4519 14 1 3.3527 -2.1055 5.0326 15 7 2.0184 -0.6906 -1.1962 16 6 2.1470 -0.0181 -2.3572 17 8 1.8583 1.1609 -2.4116 18 6 2.6415 -0.7165 -3.5669 19 6 2.7710 -0.0160 -4.7617 20 6 3.2383 -0.6902 -5.8928 21 6 3.3926 0.0144 -7.1894 22 6 3.0651 1.3648 -7.2947 23 6 3.2147 2.0163 -8.5023 24 6 3.6791 1.3289 -9.6090 25 6 4.0011 -0.0129 -9.5114 26 6 3.8599 -0.6732 -8.3077 27 6 3.5564 -2.0454 -5.7709 28 6 3.3990 -2.6682 -4.5460 29 7 2.9565 -2.0046 -3.4996 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6055 -0.2617 2.1370 34 1 1.7518 -1.7714 1.2055 35 1 3.9995 -1.0727 0.4258 36 1 3.8532 0.4370 1.3573 37 1 3.4262 -1.7364 3.1101 38 1 7.4714 -2.4864 4.9641 39 1 2.2491 -1.6317 -1.1527 40 1 2.5147 1.0318 -4.8141 41 1 2.6986 1.9015 -6.4322 42 1 2.9651 3.0639 -8.5841 43 1 3.7911 1.8416 -10.5530 44 1 4.3629 -0.5449 -10.3789 45 1 4.1112 -1.7209 -8.2327 46 1 3.9208 -2.5998 -6.6231 47 1 3.6439 -3.7153 -4.4467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568693855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:20 Heat of formation + Delta-G solvation = 10.164887 kcal Electronic energy + Delta-G solvation = -27493.226873 eV Core-core repulsion = 23639.899884 eV Total energy + Delta-G solvation = -3853.326989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.83919 -40.56778 -39.58917 -37.97724 -36.25178 -34.86775 -33.76527 -32.98658 -32.18788 -31.56514 -30.58567 -29.74708 -26.25626 -25.59736 -25.17134 -23.62571 -23.06575 -22.69979 -21.99256 -21.40156 -19.78711 -19.17032 -18.20862 -17.67579 -17.01678 -16.72723 -16.66612 -16.32998 -16.31331 -15.85400 -15.58349 -15.37407 -15.22854 -15.05014 -14.88706 -14.73126 -14.35272 -14.27425 -14.13706 -13.93407 -13.74396 -13.34523 -13.14008 -12.97950 -12.96211 -12.41117 -12.24416 -12.22347 -12.01915 -11.87267 -11.84076 -11.76774 -11.47308 -11.40543 -10.99529 -10.65034 -10.39193 -10.08750 -9.91363 -9.39713 -9.32907 -8.04268 -5.39293 -0.59976 -0.29004 0.44577 0.79756 1.38153 1.43272 1.50683 1.67265 2.01925 2.48308 2.68927 3.01533 3.07554 3.26466 3.34012 3.42994 3.60828 3.85806 3.91315 3.98762 4.00005 4.04113 4.08422 4.23289 4.24506 4.39694 4.50856 4.52770 4.54395 4.58335 4.64639 4.68004 4.73102 4.82938 4.95065 4.99370 5.03318 5.10356 5.16253 5.22011 5.29711 5.44602 5.49879 5.53684 5.56604 5.59136 5.72264 6.01141 6.19124 6.35530 6.74325 7.05805 7.08014 7.80009 8.02471 9.17357 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.002085 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.158211 B =13427.110576 C =14248.052636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.073 0.927 4 C -0.123 4.123 5 C 0.155 3.845 6 N -0.756 5.756 7 C -0.241 4.241 8 H 0.048 0.952 9 C -0.068 4.068 10 N -0.985 5.985 11 Si 0.964 3.036 12 H -0.274 1.274 13 H -0.295 1.295 14 H -0.247 1.247 15 N -0.694 5.694 16 C 0.567 3.433 17 O -0.569 6.569 18 C 0.063 3.937 19 C -0.119 4.119 20 C -0.010 4.010 21 C -0.076 4.076 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.105 4.105 27 C -0.133 4.133 28 C 0.101 3.899 29 N -0.478 5.478 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.020 0.980 36 H 0.011 0.989 37 H 0.369 0.631 38 H 0.259 0.741 39 H 0.416 0.584 40 H 0.143 0.857 41 H 0.122 0.878 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.150 0.850 46 H 0.180 0.820 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.559 0.675 -30.494 33.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.092 0.908 4 C -0.161 4.161 5 C 0.029 3.971 6 N -0.402 5.402 7 C -0.372 4.372 8 H 0.066 0.934 9 C -0.259 4.259 10 N -0.635 5.635 11 Si 0.790 3.210 12 H -0.200 1.200 13 H -0.222 1.222 14 H -0.171 1.171 15 N -0.345 5.345 16 C 0.352 3.648 17 O -0.448 6.448 18 C -0.073 4.073 19 C -0.140 4.140 20 C -0.017 4.017 21 C -0.076 4.076 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.123 4.123 27 C -0.152 4.152 28 C -0.058 4.058 29 N -0.190 5.190 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.038 0.962 36 H 0.030 0.970 37 H 0.203 0.797 38 H 0.068 0.932 39 H 0.253 0.747 40 H 0.160 0.840 41 H 0.140 0.860 42 H 0.159 0.841 43 H 0.165 0.835 44 H 0.170 0.830 45 H 0.168 0.832 46 H 0.197 0.803 47 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -14.677 1.162 -29.697 33.146 hybrid contribution 0.281 -0.139 0.360 0.478 sum -14.395 1.023 -29.337 32.695 Atomic orbital electron populations 1.22082 0.92978 1.03131 1.02780 1.21002 0.95343 0.96615 0.82931 0.90848 1.21977 0.93971 1.02364 0.97744 1.20736 0.93781 0.94380 0.88221 1.42648 1.03505 1.66623 1.27420 1.19005 0.83932 1.28259 1.06029 0.93435 1.25640 0.97811 1.02012 1.00416 1.69911 1.14360 1.49737 1.29488 0.85278 0.79217 0.78908 0.77579 1.20001 1.22207 1.17121 1.45977 1.64777 1.15004 1.08729 1.18160 0.77363 0.85756 0.83477 1.90731 1.52403 1.16270 1.85387 1.20914 1.01387 0.91305 0.93727 1.22193 0.98123 1.01816 0.91840 1.19328 0.95724 0.94183 0.92509 1.18745 1.02730 0.94051 0.92042 1.21483 0.99436 0.94008 0.98925 1.21397 0.99589 1.01127 0.92502 1.21672 0.97132 0.94992 0.99338 1.21497 0.99497 0.95014 0.98136 1.21543 0.97847 1.01113 0.91764 1.22822 0.98163 0.93729 1.00531 1.23367 0.93621 1.01597 0.87220 1.67509 1.10299 1.07376 1.33859 0.93239 0.91063 0.89729 0.88670 0.89575 0.96212 0.97044 0.79694 0.93230 0.74718 0.83968 0.85999 0.84144 0.83453 0.82986 0.83247 0.80308 0.78537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.48 71.98 0.68 -2.55 16 2 C 0.15 3.88 2.57 44.99 0.12 3.99 16 3 H 0.07 2.24 7.58 -2.38 -0.02 2.23 16 4 C -0.12 -3.45 4.87 30.59 0.15 -3.30 16 5 C 0.16 6.16 6.15 86.38 0.53 6.69 16 6 N -0.76 -36.27 5.41 -343.46 -1.86 -38.13 16 7 C -0.24 -14.35 10.47 84.03 0.88 -13.47 16 8 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 9 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 10 N -0.98 -64.52 13.97 21.65 0.30 -64.22 16 11 Si 0.96 45.64 27.74 68.60 1.90 47.54 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 13 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 14 H -0.25 -10.36 6.52 99.48 0.65 -9.71 16 15 N -0.69 -19.36 4.52 -445.08 -2.01 -21.37 16 16 C 0.57 17.50 7.78 86.88 0.68 18.18 16 17 O -0.57 -20.25 15.98 -3.73 -0.06 -20.31 16 18 C 0.06 1.72 6.75 41.85 0.28 2.01 16 19 C -0.12 -2.88 9.02 22.84 0.21 -2.67 16 20 C -0.01 -0.18 5.91 -19.86 -0.12 -0.30 16 21 C -0.08 -1.26 5.88 -20.04 -0.12 -1.38 16 22 C -0.12 -2.04 9.45 22.49 0.21 -1.82 16 23 C -0.13 -1.68 10.03 22.24 0.22 -1.46 16 24 C -0.11 -1.16 10.04 22.31 0.22 -0.94 16 25 C -0.12 -1.19 10.03 22.24 0.22 -0.97 16 26 C -0.10 -1.23 9.45 22.49 0.21 -1.02 16 27 C -0.13 -1.90 9.51 22.65 0.22 -1.69 16 28 C 0.10 1.72 11.17 84.75 0.95 2.67 16 29 N -0.48 -11.66 9.53 -185.19 -1.76 -13.42 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.02 0.83 7.75 -2.39 -0.02 0.81 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.37 16.34 5.53 -92.71 -0.51 15.83 16 38 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 39 H 0.42 10.98 7.93 -92.71 -0.74 10.24 16 40 H 0.14 3.48 5.92 -2.91 -0.02 3.47 16 41 H 0.12 2.11 6.30 -2.91 -0.02 2.09 16 42 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 44 H 0.15 0.63 8.06 -2.91 -0.02 0.61 16 45 H 0.15 0.95 6.29 -2.91 -0.02 0.93 16 46 H 0.18 1.11 6.33 -2.91 -0.02 1.10 16 47 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -80.03 393.00 2.23 -77.80 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.30 Total: 33.74 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 6.01 Total: -1.64 kcal Atomic # 7 Polarization: -131.81 SS G_CDS: -5.33 Total: -137.14 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.06 Total: -20.31 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.90 Total: 47.54 kcal Total: -80.03 2.23 -77.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568693855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.968 kcal (2) G-P(sol) polarization free energy of solvation -80.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds