Wall clock time and date at job start Tue Mar 31 2020 22:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 N 1.46504 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99458 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00538 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99842 * 180.02562 * 7 6 5 10 10 N 1.31616 * 119.99572 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00006 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47260 * 59.99736 * 11 9 7 13 13 H 1.48499 * 109.47067 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47125 * 299.99686 * 11 9 7 15 15 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 16 16 C 1.34773 * 119.99910 * 275.00232 * 15 2 1 17 17 O 1.21517 * 120.00533 * 359.97438 * 16 15 2 18 18 C 1.48184 * 120.00229 * 179.97438 * 16 15 2 19 19 C 1.39096 * 119.67167 * 180.02562 * 18 16 15 20 20 C 1.39725 * 118.91636 * 179.97438 * 19 18 16 21 21 C 1.48373 * 120.87216 * 179.97438 * 20 19 18 22 22 C 1.39358 * 120.11918 * 359.72432 * 21 20 19 23 23 C 1.38010 * 119.87138 * 179.72066 * 22 21 20 24 24 C 1.38323 * 120.12598 * 0.55223 * 23 22 21 25 25 C 1.38324 * 120.24348 * 359.72160 * 24 23 22 26 26 C 1.38016 * 120.12758 * 0.02562 * 25 24 23 27 27 C 1.39724 * 118.25495 * 359.97438 * 20 19 18 28 28 C 1.38316 * 119.21911 * 0.02562 * 27 20 19 29 29 N 1.31581 * 121.02331 * 359.73962 * 28 27 20 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 34 34 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 35 35 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 36 36 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 37 37 H 0.96992 * 120.00104 * 0.02562 * 6 5 4 38 38 H 0.97004 * 119.99275 * 180.02562 * 10 9 7 39 39 H 0.96995 * 120.00293 * 94.99410 * 15 2 1 40 40 H 1.07999 * 120.53830 * 359.97438 * 19 18 16 41 41 H 1.08003 * 120.06025 * 359.97438 * 22 21 20 42 42 H 1.07998 * 119.93724 * 180.28172 * 23 22 21 43 43 H 1.07996 * 119.88229 * 179.74357 * 24 23 22 44 44 H 1.08007 * 119.93947 * 179.97438 * 25 24 23 45 45 H 1.07994 * 120.06943 * 180.02562 * 26 25 24 46 46 H 1.08000 * 120.39147 * 179.97438 * 27 20 19 47 47 H 1.08003 * 119.49016 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3045 -2.5095 7 6 5.3953 -1.3414 -2.7788 8 1 6.0938 -0.8606 -2.1099 9 6 5.8581 -1.9959 -3.9122 10 7 5.0069 -2.5813 -4.7275 11 14 7.6888 -2.0455 -4.2799 12 1 8.4002 -2.7167 -3.1625 13 1 7.9207 -2.7999 -5.5378 14 1 8.2010 -0.6600 -4.4316 15 7 2.0184 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8585 1.1609 2.4117 18 6 2.6404 -0.7169 3.5672 19 6 2.7700 -0.0164 4.7619 20 6 3.2362 -0.6908 5.8934 21 6 3.3916 0.0140 7.1897 22 6 3.0772 1.3679 7.2917 23 6 3.2182 2.0171 8.5014 24 6 3.6814 1.3293 9.6085 25 6 4.0003 -0.0132 9.5116 26 6 3.8583 -0.6738 8.3082 27 6 3.5521 -2.0464 5.7720 28 6 3.3948 -2.6693 4.5471 29 7 2.9490 -2.0065 3.5015 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7517 -1.7715 -1.2055 34 1 1.6055 -0.2618 -2.1370 35 1 3.8532 0.4369 -1.3573 36 1 3.9995 -1.0729 -0.4259 37 1 3.4259 -1.7360 -3.1104 38 1 5.3303 -3.0390 -5.5193 39 1 2.2490 -1.6317 1.1527 40 1 2.5145 1.0316 4.8141 41 1 2.7200 1.9070 6.4266 42 1 2.9706 3.0651 8.5827 43 1 3.7942 1.8422 10.5522 44 1 4.3620 -0.5453 10.3791 45 1 4.1072 -1.7220 8.2336 46 1 3.9157 -2.6012 6.6243 47 1 3.6381 -3.7170 4.4482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568693856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:24 Heat of formation + Delta-G solvation = 28.751264 kcal Electronic energy + Delta-G solvation = -27449.825700 eV Core-core repulsion = 23597.304677 eV Total energy + Delta-G solvation = -3852.521023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.97867 -39.66526 -38.84700 -36.49760 -34.39872 -34.07755 -32.25113 -31.74198 -31.16228 -30.42710 -29.92072 -27.83037 -25.31484 -24.51612 -23.92727 -22.82342 -22.07591 -21.55990 -20.76155 -20.31404 -18.44454 -17.44689 -17.06341 -16.74298 -16.12297 -15.90666 -15.66624 -15.25826 -14.91775 -14.66827 -14.59595 -14.22363 -14.01359 -13.81095 -13.65553 -13.57396 -13.42862 -13.26855 -13.14048 -12.79735 -12.46436 -12.32928 -11.83519 -11.72820 -11.32739 -11.17230 -10.98589 -10.78556 -10.74766 -10.61678 -10.54505 -10.30511 -10.03636 -9.73180 -9.65507 -9.51333 -9.40811 -8.95941 -8.81360 -8.79761 -6.88189 -5.72928 -3.01236 0.10785 0.52254 0.94972 1.44607 2.66753 3.08922 3.36750 3.46864 3.50671 3.52140 3.76121 3.91661 4.05248 4.25909 4.49492 4.54200 4.60648 4.64820 4.68545 4.72684 4.93647 4.98782 5.09710 5.15274 5.27401 5.28824 5.40009 5.40792 5.58298 5.59105 5.60046 5.65136 5.76736 5.80816 5.97589 5.99382 6.05541 6.06013 6.15112 6.24914 6.28716 6.32729 6.38188 6.49294 6.57334 6.87693 6.91730 7.39253 7.69402 7.73487 8.21559 8.46262 9.57130 10.15273 10.50310 11.49971 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.002121 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.297510 B =13198.137209 C =14327.490597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.090 0.910 4 C -0.135 4.135 5 C 0.153 3.847 6 N -0.733 5.733 7 C -0.238 4.238 8 H 0.069 0.931 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.695 5.695 16 C 0.570 3.430 17 O -0.539 6.539 18 C 0.089 3.911 19 C -0.107 4.107 20 C -0.007 4.007 21 C -0.054 4.054 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.102 4.102 27 C -0.148 4.148 28 C 0.106 3.894 29 N -0.456 5.456 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.018 0.982 36 H 0.020 0.980 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.413 0.587 40 H 0.150 0.850 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.142 0.858 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 3.613 30.000 31.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.377 5.377 7 C -0.369 4.369 8 H 0.087 0.913 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 N -0.346 5.346 16 C 0.355 3.645 17 O -0.416 6.416 18 C -0.049 4.049 19 C -0.128 4.128 20 C -0.015 4.015 21 C -0.054 4.054 22 C -0.119 4.119 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.168 4.168 28 C -0.053 4.053 29 N -0.168 5.168 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.249 0.751 40 H 0.167 0.833 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.159 0.841 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.038 4.065 29.160 30.520 hybrid contribution 1.141 -0.325 0.367 1.242 sum -6.898 3.739 29.528 30.552 Atomic orbital electron populations 1.22163 0.95251 1.02149 1.02338 1.21071 0.93716 0.97750 0.83651 0.89182 1.22062 0.98097 1.00912 0.96208 1.20644 0.90386 0.95589 0.90831 1.42345 1.05334 1.64942 1.25114 1.19189 0.83871 1.28406 1.05432 0.91344 1.24742 0.97693 1.00988 0.97706 1.69652 1.32804 1.40730 1.15135 0.86256 0.85176 0.77467 0.77238 1.21306 1.21680 1.21291 1.45982 1.64826 1.14952 1.08834 1.17821 0.77955 0.86000 0.82753 1.90767 1.50994 1.15017 1.84793 1.21153 0.99194 0.90458 0.94072 1.22163 0.97375 1.01911 0.91347 1.19104 0.96426 0.93382 0.92627 1.18653 1.01140 0.93712 0.91905 1.21361 0.98618 0.93562 0.98348 1.21151 0.99516 1.00286 0.92637 1.21304 0.98341 0.94643 0.98778 1.21120 1.00266 0.94871 0.97577 1.21244 0.98597 1.00040 0.92166 1.22415 1.00200 0.94412 0.99756 1.22763 0.94584 1.00395 0.87511 1.67564 1.09237 1.07725 1.32278 0.91361 0.92406 0.92419 0.91220 0.90116 0.96459 0.96233 0.78314 0.93519 0.75062 0.83253 0.85210 0.85484 0.85780 0.85597 0.85471 0.84050 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 37.16 0.35 -1.61 16 2 C 0.14 2.04 2.57 -67.93 -0.17 1.87 16 3 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.13 -2.17 4.87 -26.73 -0.13 -2.30 16 5 C 0.15 3.19 6.15 -4.04 -0.02 3.17 16 6 N -0.73 -19.09 5.60 -59.90 -0.34 -19.42 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 10 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 11 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 15 N -0.70 -9.95 4.52 -54.64 -0.25 -10.20 16 16 C 0.57 8.58 7.78 -12.18 -0.09 8.49 16 17 O -0.54 -9.20 15.98 5.35 0.09 -9.11 16 18 C 0.09 1.18 6.75 -83.06 -0.56 0.62 16 19 C -0.11 -1.24 9.02 -38.71 -0.35 -1.59 16 20 C -0.01 -0.07 5.91 -104.61 -0.62 -0.69 16 21 C -0.05 -0.47 5.88 -104.89 -0.62 -1.08 16 22 C -0.10 -0.83 9.45 -39.25 -0.37 -1.20 16 23 C -0.12 -0.81 10.03 -39.63 -0.40 -1.21 16 24 C -0.11 -0.69 10.04 -39.52 -0.40 -1.09 16 25 C -0.12 -0.74 10.03 -39.63 -0.40 -1.14 16 26 C -0.10 -0.72 9.45 -39.25 -0.37 -1.09 16 27 C -0.15 -1.21 9.50 -39.00 -0.37 -1.58 16 28 C 0.11 1.00 11.17 -17.63 -0.20 0.80 16 29 N -0.46 -5.67 9.53 -9.88 -0.09 -5.76 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.02 0.42 7.75 -51.93 -0.40 0.02 16 37 H 0.38 10.35 7.67 -40.82 -0.31 10.04 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.41 5.73 7.93 -40.82 -0.32 5.41 16 40 H 0.15 1.64 5.92 -52.49 -0.31 1.33 16 41 H 0.13 0.99 6.30 -52.48 -0.33 0.66 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.50 8.06 -52.48 -0.42 0.07 16 45 H 0.13 0.63 6.29 -52.49 -0.33 0.30 16 46 H 0.14 0.72 6.33 -52.49 -0.33 0.39 16 47 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -34.49 396.12 -10.39 -44.88 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.51 Total: 10.93 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -4.96 Total: -7.20 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 0.05 Total: -63.34 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.49 -10.39 -44.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568693856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.634 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds