Wall clock time and date at job start Tue Mar 31 2020 22:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 N 1.46504 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99458 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00538 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99842 * 180.02562 * 7 6 5 10 10 N 1.31616 * 119.99572 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00006 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47260 * 59.99736 * 11 9 7 13 13 H 1.48499 * 109.47067 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47125 * 299.99686 * 11 9 7 15 15 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 16 16 C 1.34773 * 119.99910 * 275.00232 * 15 2 1 17 17 O 1.21517 * 120.00533 * 359.97438 * 16 15 2 18 18 C 1.48184 * 120.00229 * 179.97438 * 16 15 2 19 19 C 1.39096 * 119.67167 * 180.02562 * 18 16 15 20 20 C 1.39725 * 118.91636 * 179.97438 * 19 18 16 21 21 C 1.48373 * 120.87216 * 179.97438 * 20 19 18 22 22 C 1.39358 * 120.11918 * 359.72432 * 21 20 19 23 23 C 1.38010 * 119.87138 * 179.72066 * 22 21 20 24 24 C 1.38323 * 120.12598 * 0.55223 * 23 22 21 25 25 C 1.38324 * 120.24348 * 359.72160 * 24 23 22 26 26 C 1.38016 * 120.12758 * 0.02562 * 25 24 23 27 27 C 1.39724 * 118.25495 * 359.97438 * 20 19 18 28 28 C 1.38316 * 119.21911 * 0.02562 * 27 20 19 29 29 N 1.31581 * 121.02331 * 359.73962 * 28 27 20 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 34 34 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 35 35 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 36 36 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 37 37 H 0.96992 * 120.00104 * 0.02562 * 6 5 4 38 38 H 0.97004 * 119.99275 * 180.02562 * 10 9 7 39 39 H 0.96995 * 120.00293 * 94.99410 * 15 2 1 40 40 H 1.07999 * 120.53830 * 359.97438 * 19 18 16 41 41 H 1.08003 * 120.06025 * 359.97438 * 22 21 20 42 42 H 1.07998 * 119.93724 * 180.28172 * 23 22 21 43 43 H 1.07996 * 119.88229 * 179.74357 * 24 23 22 44 44 H 1.08007 * 119.93947 * 179.97438 * 25 24 23 45 45 H 1.07994 * 120.06943 * 180.02562 * 26 25 24 46 46 H 1.08000 * 120.39147 * 179.97438 * 27 20 19 47 47 H 1.08003 * 119.49016 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3045 -2.5095 7 6 5.3953 -1.3414 -2.7788 8 1 6.0938 -0.8606 -2.1099 9 6 5.8581 -1.9959 -3.9122 10 7 5.0069 -2.5813 -4.7275 11 14 7.6888 -2.0455 -4.2799 12 1 8.4002 -2.7167 -3.1625 13 1 7.9207 -2.7999 -5.5378 14 1 8.2010 -0.6600 -4.4316 15 7 2.0184 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8585 1.1609 2.4117 18 6 2.6404 -0.7169 3.5672 19 6 2.7700 -0.0164 4.7619 20 6 3.2362 -0.6908 5.8934 21 6 3.3916 0.0140 7.1897 22 6 3.0772 1.3679 7.2917 23 6 3.2182 2.0171 8.5014 24 6 3.6814 1.3293 9.6085 25 6 4.0003 -0.0132 9.5116 26 6 3.8583 -0.6738 8.3082 27 6 3.5521 -2.0464 5.7720 28 6 3.3948 -2.6693 4.5471 29 7 2.9490 -2.0065 3.5015 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7517 -1.7715 -1.2055 34 1 1.6055 -0.2618 -2.1370 35 1 3.8532 0.4369 -1.3573 36 1 3.9995 -1.0729 -0.4259 37 1 3.4259 -1.7360 -3.1104 38 1 5.3303 -3.0390 -5.5193 39 1 2.2490 -1.6317 1.1527 40 1 2.5145 1.0316 4.8141 41 1 2.7200 1.9070 6.4266 42 1 2.9706 3.0651 8.5827 43 1 3.7942 1.8422 10.5522 44 1 4.3620 -0.5453 10.3791 45 1 4.1072 -1.7220 8.2336 46 1 3.9157 -2.6012 6.6243 47 1 3.6381 -3.7170 4.4482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568693856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:23 Heat of formation + Delta-G solvation = 7.593114 kcal Electronic energy + Delta-G solvation = -27450.743186 eV Core-core repulsion = 23597.304677 eV Total energy + Delta-G solvation = -3853.438509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.83717 -40.56194 -39.58547 -37.89847 -36.15036 -34.86513 -33.61791 -32.90657 -32.08018 -31.51079 -30.57690 -29.43492 -26.26944 -25.75553 -25.17856 -23.69658 -23.08402 -22.69445 -21.93516 -21.39396 -19.44393 -19.00606 -18.20359 -17.65160 -17.00814 -16.73110 -16.71143 -16.36581 -16.28264 -15.57933 -15.50915 -15.38807 -15.25759 -15.14895 -14.89915 -14.74691 -14.32547 -14.24708 -14.13319 -13.83116 -13.57833 -13.14155 -13.11467 -12.91373 -12.87766 -12.39928 -12.31770 -12.22068 -12.03043 -11.97304 -11.84810 -11.66572 -11.47139 -11.39915 -10.95654 -10.64201 -10.38832 -10.08371 -9.91082 -9.39447 -9.02633 -7.96993 -5.26289 -0.59624 -0.28700 0.44906 0.80060 1.45523 1.48881 1.55245 1.67574 2.01977 2.54282 2.69209 3.01869 3.07793 3.34465 3.35804 3.58066 3.63706 3.86145 3.91515 4.00806 4.03073 4.05477 4.13540 4.24790 4.35125 4.41682 4.52265 4.53850 4.54734 4.62028 4.64906 4.68473 4.74670 4.83269 4.94777 4.99576 5.03592 5.10705 5.18631 5.24264 5.30469 5.44904 5.45932 5.50390 5.54004 5.56910 5.59491 6.01430 6.25124 6.36143 6.74837 7.07950 7.31606 8.06043 8.31562 9.25935 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.002121 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.297510 B =13198.137209 C =14327.490597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.148 3.852 3 H 0.074 0.926 4 C -0.118 4.118 5 C 0.154 3.846 6 N -0.744 5.744 7 C -0.251 4.251 8 H 0.069 0.931 9 C -0.074 4.074 10 N -0.966 5.966 11 Si 0.975 3.025 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.694 5.694 16 C 0.567 3.433 17 O -0.569 6.569 18 C 0.064 3.936 19 C -0.118 4.118 20 C -0.009 4.009 21 C -0.075 4.075 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.105 4.105 27 C -0.133 4.133 28 C 0.101 3.899 29 N -0.479 5.479 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.008 0.992 36 H 0.017 0.983 37 H 0.376 0.624 38 H 0.253 0.747 39 H 0.415 0.585 40 H 0.143 0.857 41 H 0.122 0.878 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.150 0.850 46 H 0.180 0.820 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 2.575 32.497 33.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.093 0.907 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.387 5.387 7 C -0.383 4.383 8 H 0.087 0.913 9 C -0.266 4.266 10 N -0.616 5.616 11 Si 0.803 3.197 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.206 1.206 15 N -0.344 5.344 16 C 0.352 3.648 17 O -0.448 6.448 18 C -0.073 4.073 19 C -0.139 4.139 20 C -0.017 4.017 21 C -0.075 4.075 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.122 4.122 27 C -0.152 4.152 28 C -0.058 4.058 29 N -0.191 5.191 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.026 0.974 36 H 0.035 0.965 37 H 0.209 0.791 38 H 0.062 0.938 39 H 0.252 0.748 40 H 0.161 0.839 41 H 0.140 0.860 42 H 0.158 0.842 43 H 0.165 0.835 44 H 0.170 0.830 45 H 0.168 0.832 46 H 0.197 0.803 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.264 3.041 31.683 32.647 hybrid contribution 0.916 0.015 -0.242 0.948 sum -6.348 3.056 31.441 32.221 Atomic orbital electron populations 1.22083 0.93153 1.03016 1.02755 1.20976 0.95230 0.96544 0.82913 0.90740 1.21898 0.94570 1.01744 0.97400 1.20738 0.93559 0.94193 0.88736 1.42519 1.04502 1.65276 1.26383 1.19547 0.85259 1.27988 1.05482 0.91319 1.25582 1.02197 1.01100 0.97727 1.69802 1.34651 1.41653 1.15495 0.85203 0.79912 0.77603 0.76988 1.20368 1.21678 1.20560 1.45977 1.64710 1.14967 1.08734 1.18180 0.77372 0.85774 0.83436 1.90731 1.52445 1.16257 1.85391 1.20894 1.01437 0.91249 0.93690 1.22189 0.98092 1.01839 0.91780 1.19324 0.95731 0.94176 0.92484 1.18744 1.02763 0.93990 0.92047 1.21484 0.99469 0.93987 0.98911 1.21394 0.99590 1.01160 0.92468 1.21671 0.97128 0.94993 0.99344 1.21495 0.99518 0.94997 0.98134 1.21542 0.97801 1.01136 0.91766 1.22819 0.98169 0.93720 1.00483 1.23371 0.93580 1.01606 0.87243 1.67514 1.10311 1.07380 1.33932 0.89902 0.91286 0.93016 0.90451 0.89477 0.97371 0.96540 0.79146 0.93843 0.74801 0.83944 0.86005 0.84158 0.83463 0.82985 0.83228 0.80264 0.78558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.48 71.98 0.68 -2.93 16 2 C 0.15 4.28 2.57 44.99 0.12 4.39 16 3 H 0.07 2.41 7.58 -2.39 -0.02 2.39 16 4 C -0.12 -3.79 4.87 30.59 0.15 -3.64 16 5 C 0.15 6.52 6.15 86.38 0.53 7.06 16 6 N -0.74 -39.20 5.60 -343.44 -1.92 -41.12 16 7 C -0.25 -14.60 9.99 84.04 0.84 -13.76 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 10 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 11 Si 0.97 47.08 29.55 68.60 2.03 49.11 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 14 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 15 N -0.69 -20.40 4.52 -445.08 -2.01 -22.41 16 16 C 0.57 17.90 7.78 86.89 0.68 18.58 16 17 O -0.57 -20.58 15.98 -3.77 -0.06 -20.64 16 18 C 0.06 1.76 6.75 41.85 0.28 2.04 16 19 C -0.12 -2.86 9.02 22.84 0.21 -2.65 16 20 C -0.01 -0.18 5.91 -19.86 -0.12 -0.29 16 21 C -0.08 -1.24 5.88 -20.04 -0.12 -1.36 16 22 C -0.12 -2.01 9.45 22.49 0.21 -1.80 16 23 C -0.13 -1.66 10.03 22.24 0.22 -1.43 16 24 C -0.11 -1.14 10.04 22.31 0.22 -0.91 16 25 C -0.12 -1.16 10.03 22.24 0.22 -0.94 16 26 C -0.10 -1.20 9.45 22.49 0.21 -0.99 16 27 C -0.13 -1.88 9.50 22.65 0.22 -1.66 16 28 C 0.10 1.73 11.17 84.75 0.95 2.68 16 29 N -0.48 -11.85 9.53 -185.18 -1.76 -13.61 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.02 0.72 7.75 -2.39 -0.02 0.70 16 37 H 0.38 20.61 7.67 -92.71 -0.71 19.90 16 38 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 39 H 0.41 11.75 7.93 -92.71 -0.74 11.01 16 40 H 0.14 3.48 5.92 -2.91 -0.02 3.47 16 41 H 0.12 2.09 6.30 -2.91 -0.02 2.07 16 42 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 43 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 44 H 0.15 0.59 8.06 -2.91 -0.02 0.57 16 45 H 0.15 0.91 6.29 -2.91 -0.02 0.89 16 46 H 0.18 1.07 6.33 -2.91 -0.02 1.06 16 47 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -75.43 396.12 2.08 -73.35 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.44 Total: 36.23 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 5.97 Total: -1.48 kcal Atomic # 7 Polarization: -131.15 SS G_CDS: -5.42 Total: -136.57 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -75.43 2.08 -73.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568693856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.942 kcal (2) G-P(sol) polarization free energy of solvation -75.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds