Wall clock time and date at job start Tue Mar 31 2020 23:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47582 * 2 1 4 4 C 1.52997 * 109.47481 * 239.99697 * 2 1 3 5 5 N 1.46896 * 109.47588 * 185.18925 * 4 2 1 6 6 C 1.46895 * 111.00240 * 163.93875 * 5 4 2 7 7 C 1.46905 * 110.99462 * 287.89049 * 5 4 2 8 8 C 1.50704 * 109.46794 * 169.99970 * 7 5 4 9 9 O 1.21297 * 120.00229 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99988 * 180.02562 * 8 7 5 11 11 C 1.37099 * 119.99931 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00110 * 0.02562 * 11 10 8 13 13 C 1.38953 * 120.00143 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00204 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99660 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47032 * 90.00140 * 15 13 11 17 17 H 1.48500 * 109.47205 * 210.00064 * 15 13 11 18 18 H 1.48503 * 109.47435 * 330.00103 * 15 13 11 19 19 N 1.46500 * 109.46741 * 119.99962 * 2 1 3 20 20 C 1.34786 * 120.00237 * 274.60320 * 19 2 1 21 21 O 1.21635 * 119.99350 * 0.02562 * 20 19 2 22 22 C 1.47247 * 120.00143 * 179.72639 * 20 19 2 23 23 C 1.36247 * 126.16599 * 180.02562 * 22 20 19 24 24 N 1.36337 * 106.89069 * 180.02562 * 23 22 20 25 25 C 1.46493 * 126.20076 * 180.02562 * 24 23 22 26 26 C 1.36174 * 107.59961 * 0.02562 * 24 23 22 27 27 O 1.35457 * 125.54906 * 179.97438 * 26 24 23 28 28 N 1.30704 * 108.89567 * 359.72775 * 26 24 23 29 29 H 1.08998 * 109.46864 * 59.99617 * 1 2 3 30 30 H 1.08993 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46664 * 300.00463 * 1 2 3 32 32 H 1.09001 * 109.46953 * 305.19234 * 4 2 1 33 33 H 1.08997 * 109.46635 * 65.18312 * 4 2 1 34 34 H 1.09001 * 109.47149 * 54.89071 * 6 5 4 35 35 H 1.09002 * 109.47365 * 174.89299 * 6 5 4 36 36 H 1.08997 * 109.47243 * 294.89462 * 6 5 4 37 37 H 1.09000 * 109.47519 * 289.99545 * 7 5 4 38 38 H 1.08999 * 109.47432 * 50.00530 * 7 5 4 39 39 H 0.96995 * 120.00202 * 359.97438 * 10 8 7 40 40 H 0.97006 * 120.00242 * 180.02562 * 14 13 11 41 41 H 0.97001 * 120.00683 * 94.61059 * 19 2 1 42 42 H 1.08000 * 126.55479 * 0.03346 * 23 22 20 43 43 H 1.09003 * 109.47180 * 90.00171 * 25 24 23 44 44 H 1.08998 * 109.47533 * 209.99721 * 25 24 23 45 45 H 1.09002 * 109.47722 * 330.00030 * 25 24 23 46 46 H 0.96698 * 113.99713 * 90.00608 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5037 -0.8307 -1.1882 6 6 3.9976 -1.8271 -2.1479 7 6 4.1389 0.4750 -1.4112 8 6 5.6104 0.3772 -1.1011 9 8 6.0834 -0.6764 -0.7304 10 7 6.4007 1.4607 -1.2348 11 6 7.7395 1.3716 -0.9532 12 1 8.1610 0.4330 -0.6247 13 6 8.5545 2.4885 -1.0916 14 7 9.8378 2.4030 -0.8222 15 14 7.8259 4.1113 -1.6618 16 1 7.3760 4.8936 -0.4824 17 1 8.8554 4.8825 -2.4039 18 1 6.6672 3.8480 -2.5525 19 7 2.0183 -0.6906 1.1962 20 6 2.1546 -0.0163 2.3553 21 8 1.8717 1.1655 2.4081 22 6 2.6396 -0.7119 3.5591 23 6 2.8232 -0.1564 4.7896 24 7 3.2808 -1.1469 5.6070 25 6 3.6168 -1.0112 7.0264 26 6 3.3691 -2.2853 4.8650 27 8 3.7861 -3.4913 5.3194 28 7 2.9809 -2.0259 3.6441 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6028 -1.7186 -1.2968 33 1 1.7545 -0.1567 -2.1367 34 1 3.6344 -1.5816 -3.1458 35 1 5.0876 -1.8236 -2.1468 36 1 3.6372 -2.8156 -1.8632 37 1 4.0058 0.7709 -2.4518 38 1 3.6791 1.2187 -0.7602 39 1 6.0225 2.3033 -1.5309 40 1 10.4066 3.1828 -0.9184 41 1 2.2436 -1.6332 1.1542 42 1 2.6409 0.8719 5.0648 43 1 2.7329 -1.2167 7.6303 44 1 4.4045 -1.7196 7.2828 45 1 3.9629 0.0037 7.2226 46 1 3.0758 -4.0472 5.6681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569136020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:35 Heat of formation + Delta-G solvation = -25.130051 kcal Electronic energy + Delta-G solvation = -30024.536836 eV Core-core repulsion = 25758.830081 eV Total energy + Delta-G solvation = -4265.706755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27763 -39.52202 -38.58804 -37.50053 -36.83201 -34.63985 -34.35370 -33.71263 -31.58560 -30.99044 -29.17686 -28.15464 -27.41856 -26.90276 -24.53803 -23.73625 -22.23557 -21.60536 -20.69192 -20.08920 -19.21620 -18.70845 -18.16779 -17.63112 -16.52004 -16.13910 -16.05424 -15.75573 -15.25074 -14.91998 -14.68569 -14.53900 -14.52089 -14.28462 -14.01248 -13.69451 -13.52533 -13.15369 -13.09198 -12.86293 -12.83290 -12.40934 -12.28574 -12.13148 -12.07732 -11.86714 -11.71327 -11.48934 -11.18582 -11.03802 -10.61684 -10.51532 -10.41046 -9.96182 -9.90041 -9.86308 -9.44746 -8.87267 -8.55353 -8.45261 -8.08948 -7.88283 -6.23407 -3.73998 1.45211 2.02882 2.23845 3.09166 3.14212 3.20927 3.25961 3.58796 3.73954 3.84497 4.03854 4.17855 4.39198 4.49675 4.70000 4.71481 4.97102 5.00504 5.03194 5.16351 5.25982 5.32988 5.33777 5.45056 5.57574 5.64791 5.69732 5.70623 5.73710 5.94348 5.95352 5.99594 6.08161 6.14031 6.20095 6.33665 6.53999 6.72148 7.24248 7.31815 7.37047 7.49891 7.67053 7.89631 8.23461 8.48727 8.69266 9.04019 9.51521 9.93852 10.89958 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008784 B = 0.003534 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.013859 B = 7921.433593 C = 9401.804725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.088 0.912 4 C 0.044 3.956 5 N -0.514 5.514 6 C 0.024 3.976 7 C 0.040 3.960 8 C 0.456 3.544 9 O -0.556 6.556 10 N -0.593 5.593 11 C -0.301 4.301 12 H 0.119 0.881 13 C 0.041 3.959 14 N -0.884 5.884 15 Si 0.878 3.122 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.689 5.689 20 C 0.608 3.392 21 O -0.552 6.552 22 C -0.040 4.040 23 C 0.041 3.959 24 N -0.465 5.465 25 C 0.068 3.932 26 C 0.376 3.624 27 O -0.437 6.437 28 N -0.447 5.447 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.369 0.631 40 H 0.272 0.728 41 H 0.412 0.588 42 H 0.195 0.805 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.199 -6.600 10.685 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.106 0.894 4 C -0.085 4.085 5 N -0.238 5.238 6 C -0.124 4.124 7 C -0.091 4.091 8 C 0.241 3.759 9 O -0.437 6.437 10 N -0.233 5.233 11 C -0.430 4.430 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.525 5.525 15 Si 0.705 3.295 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.195 1.195 19 N -0.338 5.338 20 C 0.394 3.606 21 O -0.430 6.430 22 C -0.169 4.169 23 C -0.097 4.097 24 N -0.159 5.159 25 C -0.074 4.074 26 C 0.075 3.925 27 O -0.237 6.237 28 N -0.177 5.177 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.202 0.798 40 H 0.083 0.917 41 H 0.248 0.752 42 H 0.211 0.789 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -20.133 -7.042 10.770 23.894 hybrid contribution -0.701 1.511 -0.305 1.694 sum -20.834 -5.531 10.464 23.961 Atomic orbital electron populations 1.22147 0.95106 1.02125 1.02542 1.20985 0.93265 0.97743 0.84109 0.89417 1.22484 0.89021 1.00989 0.95986 1.61515 1.03212 1.07015 1.52042 1.22518 1.03852 0.94659 0.91325 1.21951 0.95262 0.92045 0.99852 1.19635 0.87034 0.84989 0.84214 1.90537 1.75206 1.28498 1.49506 1.42209 1.09219 1.10228 1.61667 1.19421 0.81107 1.00137 1.42321 0.86344 1.25013 0.95299 0.98014 0.97835 1.69624 1.03857 1.30630 1.48360 0.86691 0.79164 0.84282 0.79384 1.19595 1.20265 1.19523 1.45523 1.65495 1.14545 1.08243 1.16739 0.76729 0.85357 0.81818 1.90780 1.52277 1.14863 1.85107 1.20406 1.11108 0.90672 0.94710 1.22632 1.01750 0.94971 0.90306 1.45805 1.49456 1.09654 1.11031 1.22133 1.02544 1.05274 0.77435 1.20263 1.03825 0.82526 0.85889 1.84944 1.35786 1.21948 1.81026 1.70868 1.16136 1.14995 1.15739 0.91718 0.92399 0.91815 0.90106 0.93388 0.96806 0.88710 0.91917 0.93415 0.89335 0.79801 0.91739 0.75193 0.78856 0.90225 0.88866 0.88954 0.74474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.49 37.16 0.35 -1.26 16 2 C 0.14 1.84 2.52 -67.93 -0.17 1.67 16 3 H 0.09 1.29 6.22 -51.93 -0.32 0.96 16 4 C 0.04 0.53 4.53 -3.83 -0.02 0.52 16 5 N -0.51 -8.40 4.17 -244.37 -1.02 -9.42 16 6 C 0.02 0.38 9.19 60.06 0.55 0.94 16 7 C 0.04 0.73 5.30 -4.97 -0.03 0.70 16 8 C 0.46 10.91 7.42 -10.98 -0.08 10.82 16 9 O -0.56 -15.39 13.96 5.54 0.08 -15.32 16 10 N -0.59 -14.89 5.09 -10.96 -0.06 -14.95 16 11 C -0.30 -8.84 10.16 -14.93 -0.15 -8.99 16 12 H 0.12 3.96 7.39 -52.48 -0.39 3.57 16 13 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 14 N -0.88 -26.59 13.96 55.50 0.77 -25.82 16 15 Si 0.88 20.21 27.74 -169.99 -4.71 15.50 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -5.68 6.52 56.52 0.37 -5.31 16 19 N -0.69 -10.02 4.79 -54.93 -0.26 -10.28 16 20 C 0.61 9.90 7.78 -12.60 -0.10 9.80 16 21 O -0.55 -10.01 16.53 5.25 0.09 -9.92 16 22 C -0.04 -0.60 6.97 -83.06 -0.58 -1.18 16 23 C 0.04 0.49 11.29 -16.27 -0.18 0.31 16 24 N -0.46 -4.77 3.16 -125.77 -0.40 -5.17 16 25 C 0.07 0.37 11.11 59.84 0.66 1.03 16 26 C 0.38 4.68 9.03 -89.16 -0.81 3.87 16 27 O -0.44 -4.24 13.55 -18.06 -0.24 -4.48 16 28 N -0.45 -6.79 11.03 -11.22 -0.12 -6.91 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.85 7.99 -51.93 -0.42 0.44 16 33 H 0.05 0.52 8.05 -51.93 -0.42 0.10 16 34 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 35 H 0.09 1.88 5.79 -51.93 -0.30 1.57 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.09 1.52 6.50 -51.93 -0.34 1.18 16 39 H 0.37 8.25 5.76 -40.82 -0.24 8.02 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.41 6.01 8.31 -40.82 -0.34 5.67 16 42 H 0.19 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.40 1.52 9.06 45.56 0.41 1.94 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -39.18 389.68 -6.39 -45.57 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -5.74 Total: 16.04 kcal Atomic # 6 Polarization: 19.93 SS G_CDS: -0.64 Total: 19.29 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.09 Total: -72.55 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.08 Total: -29.72 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.71 Total: 15.50 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.18 -6.39 -45.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569136020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.439 kcal (2) G-P(sol) polarization free energy of solvation -39.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds