Wall clock time and date at job start Tue Mar 31 2020 23:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47582 * 2 1 4 4 C 1.52997 * 109.47481 * 239.99697 * 2 1 3 5 5 N 1.46896 * 109.47588 * 185.18925 * 4 2 1 6 6 C 1.46895 * 111.00240 * 163.93875 * 5 4 2 7 7 C 1.46905 * 110.99462 * 287.89049 * 5 4 2 8 8 C 1.50704 * 109.46794 * 169.99970 * 7 5 4 9 9 O 1.21297 * 120.00229 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99988 * 180.02562 * 8 7 5 11 11 C 1.37099 * 119.99931 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00110 * 0.02562 * 11 10 8 13 13 C 1.38953 * 120.00143 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00204 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99660 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47032 * 90.00140 * 15 13 11 17 17 H 1.48500 * 109.47205 * 210.00064 * 15 13 11 18 18 H 1.48503 * 109.47435 * 330.00103 * 15 13 11 19 19 N 1.46500 * 109.46741 * 119.99962 * 2 1 3 20 20 C 1.34786 * 120.00237 * 274.60320 * 19 2 1 21 21 O 1.21635 * 119.99350 * 0.02562 * 20 19 2 22 22 C 1.47247 * 120.00143 * 179.72639 * 20 19 2 23 23 C 1.36247 * 126.16599 * 180.02562 * 22 20 19 24 24 N 1.36337 * 106.89069 * 180.02562 * 23 22 20 25 25 C 1.46493 * 126.20076 * 180.02562 * 24 23 22 26 26 C 1.36174 * 107.59961 * 0.02562 * 24 23 22 27 27 O 1.35457 * 125.54906 * 179.97438 * 26 24 23 28 28 N 1.30704 * 108.89567 * 359.72775 * 26 24 23 29 29 H 1.08998 * 109.46864 * 59.99617 * 1 2 3 30 30 H 1.08993 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46664 * 300.00463 * 1 2 3 32 32 H 1.09001 * 109.46953 * 305.19234 * 4 2 1 33 33 H 1.08997 * 109.46635 * 65.18312 * 4 2 1 34 34 H 1.09001 * 109.47149 * 54.89071 * 6 5 4 35 35 H 1.09002 * 109.47365 * 174.89299 * 6 5 4 36 36 H 1.08997 * 109.47243 * 294.89462 * 6 5 4 37 37 H 1.09000 * 109.47519 * 289.99545 * 7 5 4 38 38 H 1.08999 * 109.47432 * 50.00530 * 7 5 4 39 39 H 0.96995 * 120.00202 * 359.97438 * 10 8 7 40 40 H 0.97006 * 120.00242 * 180.02562 * 14 13 11 41 41 H 0.97001 * 120.00683 * 94.61059 * 19 2 1 42 42 H 1.08000 * 126.55479 * 0.03346 * 23 22 20 43 43 H 1.09003 * 109.47180 * 90.00171 * 25 24 23 44 44 H 1.08998 * 109.47533 * 209.99721 * 25 24 23 45 45 H 1.09002 * 109.47722 * 330.00030 * 25 24 23 46 46 H 0.96698 * 113.99713 * 90.00608 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5037 -0.8307 -1.1882 6 6 3.9976 -1.8271 -2.1479 7 6 4.1389 0.4750 -1.4112 8 6 5.6104 0.3772 -1.1011 9 8 6.0834 -0.6764 -0.7304 10 7 6.4007 1.4607 -1.2348 11 6 7.7395 1.3716 -0.9532 12 1 8.1610 0.4330 -0.6247 13 6 8.5545 2.4885 -1.0916 14 7 9.8378 2.4030 -0.8222 15 14 7.8259 4.1113 -1.6618 16 1 7.3760 4.8936 -0.4824 17 1 8.8554 4.8825 -2.4039 18 1 6.6672 3.8480 -2.5525 19 7 2.0183 -0.6906 1.1962 20 6 2.1546 -0.0163 2.3553 21 8 1.8717 1.1655 2.4081 22 6 2.6396 -0.7119 3.5591 23 6 2.8232 -0.1564 4.7896 24 7 3.2808 -1.1469 5.6070 25 6 3.6168 -1.0112 7.0264 26 6 3.3691 -2.2853 4.8650 27 8 3.7861 -3.4913 5.3194 28 7 2.9809 -2.0259 3.6441 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6028 -1.7186 -1.2968 33 1 1.7545 -0.1567 -2.1367 34 1 3.6344 -1.5816 -3.1458 35 1 5.0876 -1.8236 -2.1468 36 1 3.6372 -2.8156 -1.8632 37 1 4.0058 0.7709 -2.4518 38 1 3.6791 1.2187 -0.7602 39 1 6.0225 2.3033 -1.5309 40 1 10.4066 3.1828 -0.9184 41 1 2.2436 -1.6332 1.1542 42 1 2.6409 0.8719 5.0648 43 1 2.7329 -1.2167 7.6303 44 1 4.4045 -1.7196 7.2828 45 1 3.9629 0.0037 7.2226 46 1 3.0758 -4.0472 5.6681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569136020.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:35 Heat of formation + Delta-G solvation = -61.847702 kcal Electronic energy + Delta-G solvation = -30026.129033 eV Core-core repulsion = 25758.830081 eV Total energy + Delta-G solvation = -4267.298952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.18397 -40.78676 -40.23314 -38.40511 -38.11225 -36.13601 -35.54330 -35.15151 -33.75499 -32.02385 -30.11628 -29.72501 -28.08226 -27.93954 -26.48083 -24.75455 -23.48737 -22.47969 -21.79901 -21.29240 -21.07446 -20.13293 -19.52419 -18.61680 -17.86291 -17.40620 -17.18113 -16.79931 -16.65994 -16.58293 -15.80948 -15.72675 -15.58508 -15.33088 -15.28440 -15.06239 -14.96314 -14.71158 -14.34964 -14.10564 -13.64442 -13.58388 -13.52967 -13.28612 -13.12330 -12.93770 -12.88386 -12.79692 -12.66614 -12.43020 -12.40027 -11.98632 -11.67680 -11.47222 -11.42942 -11.00925 -10.81234 -10.35048 -10.23184 -9.98352 -9.51625 -9.15717 -8.42057 -6.02124 0.50284 1.11691 1.27941 1.33976 1.40413 1.41860 1.96221 2.21557 2.25328 2.52458 2.65632 2.86833 3.13786 3.23325 3.65244 3.80628 3.85110 4.06462 4.12570 4.21492 4.33025 4.34999 4.37991 4.42341 4.49570 4.59368 4.67432 4.67722 4.74241 4.81554 4.87926 4.89008 5.09525 5.22376 5.27219 5.35523 5.52330 5.63010 5.66579 5.90210 6.03394 6.23260 6.48895 6.59743 6.63776 6.80129 6.88391 7.33203 7.39644 7.97716 8.75859 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008784 B = 0.003534 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.013859 B = 7921.433593 C = 9401.804725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.140 3.860 3 H 0.068 0.932 4 C 0.051 3.949 5 N -0.538 5.538 6 C 0.031 3.969 7 C 0.055 3.945 8 C 0.452 3.548 9 O -0.601 6.601 10 N -0.595 5.595 11 C -0.326 4.326 12 H 0.054 0.946 13 C -0.013 4.013 14 N -0.935 5.935 15 Si 0.962 3.038 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.233 1.233 19 N -0.686 5.686 20 C 0.599 3.401 21 O -0.581 6.581 22 C -0.080 4.080 23 C 0.050 3.950 24 N -0.456 5.456 25 C 0.060 3.940 26 C 0.374 3.626 27 O -0.442 6.442 28 N -0.486 5.486 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.387 0.613 40 H 0.279 0.721 41 H 0.410 0.590 42 H 0.215 0.785 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.260 -5.241 10.261 26.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.035 3.965 3 H 0.086 0.914 4 C -0.077 4.077 5 N -0.263 5.263 6 C -0.117 4.117 7 C -0.077 4.077 8 C 0.240 3.760 9 O -0.485 6.485 10 N -0.237 5.237 11 C -0.455 4.455 12 H 0.072 0.928 13 C -0.212 4.212 14 N -0.576 5.576 15 Si 0.782 3.218 16 H -0.185 1.185 17 H -0.196 1.196 18 H -0.156 1.156 19 N -0.335 5.335 20 C 0.386 3.614 21 O -0.462 6.462 22 C -0.209 4.209 23 C -0.089 4.089 24 N -0.150 5.150 25 C -0.080 4.080 26 C 0.071 3.929 27 O -0.246 6.246 28 N -0.216 5.216 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.222 0.778 40 H 0.088 0.912 41 H 0.246 0.754 42 H 0.232 0.768 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.124 0.876 46 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -23.235 -5.731 10.357 26.076 hybrid contribution 0.310 0.877 -0.038 0.931 sum -22.925 -4.854 10.318 25.604 Atomic orbital electron populations 1.22049 0.92774 1.03121 1.02868 1.21161 0.95027 0.96572 0.83735 0.91358 1.22562 0.85932 1.02711 0.96483 1.61418 1.05802 1.06145 1.52904 1.22371 1.00908 0.95599 0.92835 1.21811 0.90348 0.93599 1.01895 1.20889 0.89511 0.83742 0.81892 1.90522 1.76834 1.30292 1.50838 1.42056 1.07701 1.11543 1.62406 1.18987 0.83602 0.98516 1.44404 0.92783 1.26062 0.95399 1.02706 0.97017 1.69801 1.05914 1.32556 1.49303 0.85409 0.79524 0.77192 0.79701 1.18474 1.19574 1.15590 1.45619 1.64933 1.14402 1.08504 1.17022 0.76508 0.85218 0.82643 1.90736 1.53923 1.15860 1.85708 1.20481 1.13551 0.91271 0.95553 1.22976 1.00347 0.95900 0.89695 1.46016 1.48062 1.08412 1.12487 1.22520 1.04190 1.06437 0.74825 1.20370 1.02941 0.83723 0.85817 1.84897 1.37263 1.21402 1.81004 1.70738 1.17823 1.15402 1.17682 0.89369 0.91047 0.93464 0.87954 0.90573 0.94110 0.93414 0.90376 0.90095 0.88097 0.77771 0.91158 0.75405 0.76841 0.87354 0.88261 0.87577 0.71545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.49 71.98 0.68 -1.97 16 2 C 0.14 3.32 2.52 44.99 0.11 3.44 16 3 H 0.07 1.91 6.22 -2.39 -0.01 1.89 16 4 C 0.05 1.07 4.53 86.30 0.39 1.46 16 5 N -0.54 -16.75 4.17 -927.06 -3.87 -20.62 16 6 C 0.03 0.93 9.19 127.69 1.17 2.11 16 7 C 0.05 1.88 5.30 85.56 0.45 2.33 16 8 C 0.45 22.01 7.42 87.66 0.65 22.66 16 9 O -0.60 -35.07 13.96 -3.08 -0.04 -35.11 16 10 N -0.59 -30.14 5.09 -306.97 -1.56 -31.71 16 11 C -0.33 -20.05 10.16 84.04 0.85 -19.20 16 12 H 0.05 3.94 7.39 -2.91 -0.02 3.91 16 13 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 14 N -0.93 -58.22 13.96 21.66 0.30 -57.92 16 15 Si 0.96 40.94 27.74 68.60 1.90 42.84 16 16 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.23 -8.44 6.52 99.48 0.65 -7.80 16 19 N -0.69 -19.90 4.79 -445.95 -2.14 -22.03 16 20 C 0.60 19.94 7.78 86.61 0.67 20.61 16 21 O -0.58 -21.43 16.53 -4.14 -0.07 -21.50 16 22 C -0.08 -2.49 6.97 40.40 0.28 -2.21 16 23 C 0.05 1.20 11.29 83.53 0.94 2.15 16 24 N -0.46 -8.90 3.16 -662.75 -2.09 -10.99 16 25 C 0.06 0.52 11.11 127.77 1.42 1.94 16 26 C 0.37 9.20 9.03 179.84 1.62 10.82 16 27 O -0.44 -8.21 13.55 -87.55 -1.19 -9.40 16 28 N -0.49 -15.09 11.03 -303.16 -3.34 -18.44 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.76 7.99 -2.39 -0.02 1.74 16 33 H 0.08 1.25 8.05 -2.39 -0.02 1.23 16 34 H 0.04 1.01 8.13 -2.39 -0.02 0.99 16 35 H 0.05 1.93 5.79 -2.39 -0.01 1.91 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.08 2.27 8.12 -2.39 -0.02 2.25 16 38 H 0.10 3.26 6.50 -2.39 -0.02 3.25 16 39 H 0.39 16.58 5.76 -92.71 -0.53 16.05 16 40 H 0.28 15.84 8.31 -92.70 -0.77 15.07 16 41 H 0.41 12.06 8.31 -92.71 -0.77 11.29 16 42 H 0.21 4.00 8.06 -2.91 -0.02 3.98 16 43 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.42 2.69 9.06 -74.06 -0.67 2.01 16 Total: -1.00 -93.41 389.68 -3.36 -96.77 By element: Atomic # 1 Polarization: 45.26 SS G_CDS: -0.99 Total: 44.27 kcal Atomic # 6 Polarization: 34.10 SS G_CDS: 9.73 Total: 43.82 kcal Atomic # 7 Polarization: -149.00 SS G_CDS: -12.70 Total: -161.70 kcal Atomic # 8 Polarization: -64.71 SS G_CDS: -1.30 Total: -66.01 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.90 Total: 42.84 kcal Total: -93.41 -3.36 -96.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569136020.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.922 kcal (2) G-P(sol) polarization free energy of solvation -93.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds