Wall clock time and date at job start Tue Mar 31 2020 22:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 110.63979 * 2 1 4 4 C 1.54327 * 110.71558 * 236.86352 * 2 1 3 5 5 N 1.47023 * 107.27089 * 263.82541 * 4 2 1 6 6 C 1.34773 * 125.65197 * 180.79370 * 5 4 2 7 7 O 1.21604 * 120.00405 * 174.71533 * 6 5 4 8 8 C 1.47438 * 119.99688 * 354.71790 * 6 5 4 9 9 C 1.38744 * 120.33389 * 315.62131 * 8 6 5 10 10 C 1.38869 * 120.72126 * 180.02562 * 9 8 6 11 11 C 1.36353 * 121.06158 * 359.95126 * 10 9 8 12 12 C 1.40442 * 120.08535 * 0.03042 * 11 10 9 13 13 C 1.40800 * 121.26764 * 179.97438 * 12 11 10 14 14 C 1.36638 * 118.15280 * 179.97438 * 13 12 11 15 15 C 1.39223 * 119.91031 * 0.02562 * 14 13 12 16 16 N 1.31232 * 121.69472 * 359.97438 * 15 14 13 17 17 C 1.33348 * 121.35385 * 359.79506 * 16 15 14 18 18 C 1.47433 * 108.70124 * 1.06412 * 5 4 2 19 19 C 1.54905 * 104.83146 * 335.86958 * 18 5 4 20 20 H 1.09002 * 111.03611 * 278.91881 * 19 18 5 21 21 C 1.53003 * 111.00145 * 155.08375 * 19 18 5 22 22 N 1.46496 * 109.47045 * 72.80546 * 21 19 18 23 23 C 1.36939 * 119.99915 * 179.97438 * 22 21 19 24 24 H 1.07999 * 119.99680 * 359.97438 * 23 22 21 25 25 C 1.38810 * 119.99954 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99748 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 120.00230 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47269 * 89.99841 * 27 25 23 29 29 H 1.48494 * 109.47365 * 209.99611 * 27 25 23 30 30 H 1.48504 * 109.47131 * 329.99933 * 27 25 23 31 31 H 1.09008 * 109.47291 * 181.68200 * 1 2 3 32 32 H 1.09001 * 109.47012 * 301.68340 * 1 2 3 33 33 H 1.09003 * 109.47483 * 61.68815 * 1 2 3 34 34 H 1.09003 * 109.87891 * 144.41650 * 4 2 1 35 35 H 1.08994 * 109.88990 * 23.24536 * 4 2 1 36 36 H 1.07997 * 119.63666 * 359.97278 * 9 8 6 37 37 H 1.07995 * 119.46829 * 179.97438 * 10 9 8 38 38 H 1.07999 * 119.95392 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.92799 * 359.97438 * 13 12 11 40 40 H 1.08005 * 120.04175 * 179.97438 * 14 13 12 41 41 H 1.08001 * 119.15528 * 179.97438 * 15 14 13 42 42 H 1.09000 * 110.36709 * 94.70877 * 18 5 4 43 43 H 1.09002 * 110.36285 * 217.02830 * 18 5 4 44 44 H 1.09004 * 109.46556 * 192.80521 * 21 19 18 45 45 H 1.08994 * 109.46974 * 312.79978 * 21 19 18 46 46 H 0.97000 * 120.00473 * 359.97438 * 22 21 19 47 47 H 0.97001 * 120.00020 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0759 -0.7891 -1.2087 5 7 2.3715 -2.1518 -0.7429 6 6 2.8808 -3.1464 -1.4965 7 8 3.1756 -4.2086 -0.9829 8 6 3.0805 -2.9467 -2.9435 9 6 2.0951 -2.3409 -3.7098 10 6 2.2745 -2.1492 -5.0734 11 6 3.4204 -2.5486 -5.6953 12 6 4.4436 -3.1657 -4.9573 13 6 5.6366 -3.5884 -5.5740 14 6 6.5901 -4.1811 -4.7952 15 6 6.3652 -4.3519 -3.4319 16 7 5.2514 -3.9562 -2.8620 17 6 4.2835 -3.3669 -3.5650 18 6 2.0126 -2.2521 0.6835 19 6 2.0789 -0.7976 1.2123 20 1 3.1059 -0.5094 1.4369 21 6 1.1815 -0.6184 2.4385 22 7 1.7913 -1.2851 3.5916 23 6 1.1642 -1.2581 4.8087 24 1 0.2203 -0.7450 4.9185 25 6 1.7419 -1.8902 5.9012 26 7 1.1393 -1.8638 7.0711 27 14 3.3749 -2.7770 5.7115 28 1 4.4866 -1.8313 5.9854 29 1 3.4388 -3.9075 6.6722 30 1 3.4976 -3.2973 4.3260 31 1 -0.3634 -1.0273 0.0302 32 1 -0.3633 0.5398 0.8745 33 1 -0.3634 0.4874 -0.9047 34 1 2.9868 -0.3179 -1.5782 35 1 1.3262 -0.8220 -1.9992 36 1 1.1783 -2.0156 -3.2407 37 1 1.4941 -1.6758 -5.6506 38 1 3.5412 -2.3903 -6.7568 39 1 5.7938 -3.4480 -6.6333 40 1 7.5167 -4.5173 -5.2368 41 1 7.1270 -4.8223 -2.8279 42 1 1.0039 -2.6502 0.7938 43 1 2.7293 -2.8810 1.2117 44 1 1.0662 0.4442 2.6521 45 1 0.2037 -1.0573 2.2402 46 1 2.6393 -1.7456 3.4931 47 1 1.5431 -2.3052 7.8347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569843680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:50 Heat of formation + Delta-G solvation = 44.889066 kcal Electronic energy + Delta-G solvation = -28959.933385 eV Core-core repulsion = 25108.112150 eV Total energy + Delta-G solvation = -3851.821235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.32956 -40.01731 -37.98119 -37.22629 -34.81785 -33.80960 -32.82150 -31.33374 -30.97094 -30.67164 -29.18358 -26.74585 -25.89085 -24.83524 -23.87601 -23.60106 -22.43254 -21.49192 -19.63371 -19.40730 -18.76387 -17.77572 -17.27681 -17.18742 -16.52984 -15.90870 -15.47962 -15.11988 -14.89611 -14.68724 -14.43000 -14.28304 -14.04179 -13.86763 -13.56797 -13.31615 -13.17922 -12.81158 -12.72694 -12.60255 -12.47152 -12.21217 -12.05968 -11.90781 -11.71821 -11.63266 -11.27208 -10.89825 -10.86358 -10.51799 -10.47869 -10.34297 -10.04885 -10.01548 -9.55621 -9.52838 -9.18456 -8.85628 -8.67816 -8.50450 -7.19642 -5.73186 -3.08746 -0.15545 0.43874 1.44946 2.43405 2.82016 3.04686 3.43825 3.49255 3.51754 3.78515 3.92588 4.11356 4.34036 4.34462 4.47196 4.50487 4.52699 4.64482 4.67162 4.73254 4.83574 4.91350 5.03414 5.20413 5.27811 5.35401 5.41593 5.46660 5.47836 5.56831 5.58984 5.62546 5.68073 5.78171 5.80829 5.83070 5.91714 5.95768 6.06489 6.09978 6.13921 6.22234 6.33316 6.38932 6.41401 6.62908 6.75128 7.53350 7.68074 8.02246 8.22970 8.45785 9.24758 9.97551 10.16696 11.45110 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015463 B = 0.002858 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.397612 B = 9794.578569 C =11242.432532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.090 0.910 4 C 0.102 3.898 5 N -0.616 5.616 6 C 0.576 3.424 7 O -0.508 6.508 8 C -0.094 4.094 9 C -0.069 4.069 10 C -0.122 4.122 11 C -0.078 4.078 12 C -0.109 4.109 13 C -0.058 4.058 14 C -0.175 4.175 15 C 0.135 3.865 16 N -0.454 5.454 17 C 0.160 3.840 18 C 0.116 3.884 19 C -0.107 4.107 20 H 0.084 0.916 21 C 0.170 3.830 22 N -0.757 5.757 23 C -0.244 4.244 24 H 0.090 0.910 25 C 0.005 3.995 26 N -0.934 5.934 27 Si 0.882 3.118 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.275 1.275 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.161 0.839 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.032 0.968 45 H 0.033 0.967 46 H 0.361 0.639 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.955 2.203 -33.099 33.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.108 0.892 4 C -0.021 4.021 5 N -0.351 5.351 6 C 0.363 3.637 7 O -0.383 6.383 8 C -0.098 4.098 9 C -0.089 4.089 10 C -0.139 4.139 11 C -0.097 4.097 12 C -0.111 4.111 13 C -0.084 4.084 14 C -0.195 4.195 15 C -0.037 4.037 16 N -0.161 5.161 17 C 0.037 3.963 18 C -0.006 4.006 19 C -0.126 4.126 20 H 0.103 0.897 21 C 0.043 3.957 22 N -0.403 5.403 23 C -0.374 4.374 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.582 5.582 27 Si 0.712 3.288 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.201 1.201 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.740 1.511 -31.756 32.306 hybrid contribution 1.396 -0.553 -0.961 1.783 sum 7.136 0.957 -32.717 33.500 Atomic orbital electron populations 1.21862 0.93843 1.02506 1.02065 1.22182 0.96758 0.99147 0.93408 0.89162 1.22295 0.99971 0.82396 0.97442 1.48425 1.63558 1.11208 1.11864 1.17510 0.77424 0.83441 0.85276 1.90838 1.48682 1.25763 1.72992 1.19824 0.94246 1.01600 0.94158 1.21534 0.98440 0.94827 0.94081 1.20846 0.98129 1.00644 0.94326 1.21137 0.92626 0.96074 0.99829 1.18802 0.96374 1.01901 0.94023 1.21474 0.91835 0.94783 1.00289 1.21957 1.00847 1.01163 0.95492 1.23136 0.94002 0.93956 0.92622 1.68149 1.00594 1.08642 1.38669 1.18570 0.92991 0.95468 0.89280 1.22347 1.01254 0.97766 0.79189 1.22672 1.01143 0.93688 0.95115 0.89742 1.20613 0.94246 0.96299 0.84560 1.42757 1.25060 1.65451 1.07016 1.19031 1.04524 1.29104 0.84702 0.89193 1.24659 0.98371 1.00553 0.95462 1.69702 1.39695 1.48773 1.00071 0.86583 0.85078 0.79801 0.77355 1.21102 1.21680 1.20108 0.92245 0.91216 0.92799 0.91669 0.91226 0.84280 0.84703 0.84840 0.84171 0.84300 0.82175 0.90779 0.90199 0.94984 0.94877 0.80633 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 7.91 37.16 0.29 -1.20 16 2 C -0.10 -1.06 3.47 -88.79 -0.31 -1.37 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.10 1.09 5.49 -3.06 -0.02 1.07 16 5 N -0.62 -8.95 3.33 -171.77 -0.57 -9.52 16 6 C 0.58 9.49 7.18 -12.52 -0.09 9.40 16 7 O -0.51 -10.56 16.58 5.27 0.09 -10.48 16 8 C -0.09 -1.25 5.42 -104.61 -0.57 -1.82 16 9 C -0.07 -0.64 8.40 -39.16 -0.33 -0.97 16 10 C -0.12 -0.84 9.93 -40.03 -0.40 -1.23 16 11 C -0.08 -0.55 9.75 -39.43 -0.38 -0.93 16 12 C -0.11 -1.05 5.74 -106.82 -0.61 -1.67 16 13 C -0.06 -0.42 9.90 -39.19 -0.39 -0.81 16 14 C -0.17 -1.28 10.03 -39.79 -0.40 -1.68 16 15 C 0.14 1.40 11.15 -17.44 -0.19 1.21 16 16 N -0.45 -6.62 9.26 -10.76 -0.10 -6.72 16 17 C 0.16 2.13 6.59 -84.58 -0.56 1.57 16 18 C 0.12 1.90 6.03 -2.53 -0.02 1.89 16 19 C -0.11 -1.61 2.91 -88.47 -0.26 -1.87 16 20 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 21 C 0.17 3.16 4.54 -4.04 -0.02 3.15 16 22 N -0.76 -18.16 5.35 -59.91 -0.32 -18.48 16 23 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 24 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 26 N -0.93 -29.85 13.97 55.49 0.78 -29.07 16 27 Si 0.88 22.96 27.74 -169.99 -4.71 18.25 16 28 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 30 H -0.28 -6.90 6.52 56.52 0.37 -6.53 16 31 H 0.06 0.67 7.35 -51.92 -0.38 0.28 16 32 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.58 5.41 -51.93 -0.28 0.30 16 36 H 0.14 1.07 6.09 -52.49 -0.32 0.75 16 37 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 39 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 41 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.07 1.23 7.48 -51.93 -0.39 0.84 16 43 H 0.08 1.53 7.99 -51.93 -0.41 1.12 16 44 H 0.03 0.60 8.05 -51.93 -0.42 0.18 16 45 H 0.03 0.62 6.94 -51.93 -0.36 0.26 16 46 H 0.36 8.65 5.53 -40.82 -0.23 8.42 16 47 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 378.53 15.07 5.70 5.70 Total: -1.00 -37.88 378.53 -10.19 -48.07 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.56 Total: 4.57 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -4.50 Total: -2.33 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -0.22 Total: -63.79 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.71 Total: 18.25 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.88 -10.19 -48.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569843680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.961 kcal (2) G-P(sol) polarization free energy of solvation -37.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds