Wall clock time and date at job start Tue Mar 31 2020 22:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 110.63979 * 2 1 4 4 C 1.54327 * 110.71558 * 236.86352 * 2 1 3 5 5 N 1.47023 * 107.27089 * 263.82541 * 4 2 1 6 6 C 1.34773 * 125.65197 * 180.79370 * 5 4 2 7 7 O 1.21604 * 120.00405 * 174.71533 * 6 5 4 8 8 C 1.47438 * 119.99688 * 354.71790 * 6 5 4 9 9 C 1.38744 * 120.33389 * 315.62131 * 8 6 5 10 10 C 1.38869 * 120.72126 * 180.02562 * 9 8 6 11 11 C 1.36353 * 121.06158 * 359.95126 * 10 9 8 12 12 C 1.40442 * 120.08535 * 0.03042 * 11 10 9 13 13 C 1.40800 * 121.26764 * 179.97438 * 12 11 10 14 14 C 1.36638 * 118.15280 * 179.97438 * 13 12 11 15 15 C 1.39223 * 119.91031 * 0.02562 * 14 13 12 16 16 N 1.31232 * 121.69472 * 359.97438 * 15 14 13 17 17 C 1.33348 * 121.35385 * 359.79506 * 16 15 14 18 18 C 1.47433 * 108.70124 * 1.06412 * 5 4 2 19 19 C 1.54905 * 104.83146 * 335.86958 * 18 5 4 20 20 H 1.09002 * 111.03611 * 278.91881 * 19 18 5 21 21 C 1.53003 * 111.00145 * 155.08375 * 19 18 5 22 22 N 1.46496 * 109.47045 * 72.80546 * 21 19 18 23 23 C 1.36939 * 119.99915 * 179.97438 * 22 21 19 24 24 H 1.07999 * 119.99680 * 359.97438 * 23 22 21 25 25 C 1.38810 * 119.99954 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99748 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 120.00230 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47269 * 89.99841 * 27 25 23 29 29 H 1.48494 * 109.47365 * 209.99611 * 27 25 23 30 30 H 1.48504 * 109.47131 * 329.99933 * 27 25 23 31 31 H 1.09008 * 109.47291 * 181.68200 * 1 2 3 32 32 H 1.09001 * 109.47012 * 301.68340 * 1 2 3 33 33 H 1.09003 * 109.47483 * 61.68815 * 1 2 3 34 34 H 1.09003 * 109.87891 * 144.41650 * 4 2 1 35 35 H 1.08994 * 109.88990 * 23.24536 * 4 2 1 36 36 H 1.07997 * 119.63666 * 359.97278 * 9 8 6 37 37 H 1.07995 * 119.46829 * 179.97438 * 10 9 8 38 38 H 1.07999 * 119.95392 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.92799 * 359.97438 * 13 12 11 40 40 H 1.08005 * 120.04175 * 179.97438 * 14 13 12 41 41 H 1.08001 * 119.15528 * 179.97438 * 15 14 13 42 42 H 1.09000 * 110.36709 * 94.70877 * 18 5 4 43 43 H 1.09002 * 110.36285 * 217.02830 * 18 5 4 44 44 H 1.09004 * 109.46556 * 192.80521 * 21 19 18 45 45 H 1.08994 * 109.46974 * 312.79978 * 21 19 18 46 46 H 0.97000 * 120.00473 * 359.97438 * 22 21 19 47 47 H 0.97001 * 120.00020 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0199 0.0000 4 6 2.0759 -0.7891 -1.2087 5 7 2.3715 -2.1518 -0.7429 6 6 2.8808 -3.1464 -1.4965 7 8 3.1756 -4.2086 -0.9829 8 6 3.0805 -2.9467 -2.9435 9 6 2.0951 -2.3409 -3.7098 10 6 2.2745 -2.1492 -5.0734 11 6 3.4204 -2.5486 -5.6953 12 6 4.4436 -3.1657 -4.9573 13 6 5.6366 -3.5884 -5.5740 14 6 6.5901 -4.1811 -4.7952 15 6 6.3652 -4.3519 -3.4319 16 7 5.2514 -3.9562 -2.8620 17 6 4.2835 -3.3669 -3.5650 18 6 2.0126 -2.2521 0.6835 19 6 2.0789 -0.7976 1.2123 20 1 3.1059 -0.5094 1.4369 21 6 1.1815 -0.6184 2.4385 22 7 1.7913 -1.2851 3.5916 23 6 1.1642 -1.2581 4.8087 24 1 0.2203 -0.7450 4.9185 25 6 1.7419 -1.8902 5.9012 26 7 1.1393 -1.8638 7.0711 27 14 3.3749 -2.7770 5.7115 28 1 4.4866 -1.8313 5.9854 29 1 3.4388 -3.9075 6.6722 30 1 3.4976 -3.2973 4.3260 31 1 -0.3634 -1.0273 0.0302 32 1 -0.3633 0.5398 0.8745 33 1 -0.3634 0.4874 -0.9047 34 1 2.9868 -0.3179 -1.5782 35 1 1.3262 -0.8220 -1.9992 36 1 1.1783 -2.0156 -3.2407 37 1 1.4941 -1.6758 -5.6506 38 1 3.5412 -2.3903 -6.7568 39 1 5.7938 -3.4480 -6.6333 40 1 7.5167 -4.5173 -5.2368 41 1 7.1270 -4.8223 -2.8279 42 1 1.0039 -2.6502 0.7938 43 1 2.7293 -2.8810 1.2117 44 1 1.0662 0.4442 2.6521 45 1 0.2037 -1.0573 2.2402 46 1 2.6393 -1.7456 3.4931 47 1 1.5431 -2.3052 7.8347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569843680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:49 Heat of formation + Delta-G solvation = 18.487138 kcal Electronic energy + Delta-G solvation = -28961.078259 eV Core-core repulsion = 25108.112150 eV Total energy + Delta-G solvation = -3852.966109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.09707 -41.05850 -39.16210 -37.94665 -36.61925 -34.61694 -34.17402 -33.14456 -31.67460 -31.44912 -30.52748 -27.74585 -27.31843 -25.65720 -24.85763 -24.51583 -23.76999 -22.81833 -20.77656 -20.61556 -19.53640 -19.32487 -18.45507 -17.94391 -17.42371 -17.08541 -16.64081 -16.42140 -15.97267 -15.76154 -15.62516 -15.32339 -15.10966 -14.83139 -14.65344 -14.56685 -14.30017 -14.06997 -13.92272 -13.75788 -13.68188 -13.21653 -13.11857 -12.99176 -12.84385 -12.77468 -12.61333 -12.29938 -12.22890 -11.87224 -11.70293 -11.60048 -11.55599 -11.47194 -11.13640 -10.99161 -10.33924 -9.82919 -9.75287 -9.31582 -9.28522 -8.06438 -5.38341 -0.80033 -0.19578 0.75944 1.32790 1.35536 1.41491 1.63471 1.83821 2.06140 2.43246 3.08082 3.19170 3.25983 3.29561 3.45512 3.55665 3.70110 3.75572 3.83134 3.92205 3.97795 4.02212 4.11032 4.18892 4.25416 4.38992 4.45175 4.49588 4.52713 4.62677 4.66380 4.74638 4.79458 4.87962 4.89309 4.98607 5.00578 5.06818 5.13425 5.18710 5.22344 5.26713 5.29938 5.36064 5.51452 5.55530 5.73805 5.82374 6.18406 6.42422 6.98650 7.04440 7.06752 7.81900 7.98211 9.15102 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015463 B = 0.002858 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.397612 B = 9794.578569 C =11242.432532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.116 0.884 4 C 0.102 3.898 5 N -0.614 5.614 6 C 0.570 3.430 7 O -0.573 6.573 8 C -0.142 4.142 9 C -0.050 4.050 10 C -0.123 4.123 11 C -0.058 4.058 12 C -0.127 4.127 13 C -0.046 4.046 14 C -0.177 4.177 15 C 0.120 3.880 16 N -0.522 5.522 17 C 0.129 3.871 18 C 0.118 3.882 19 C -0.099 4.099 20 H 0.078 0.922 21 C 0.170 3.830 22 N -0.764 5.764 23 C -0.228 4.228 24 H 0.066 0.934 25 C -0.059 4.059 26 N -0.980 5.980 27 Si 0.945 3.055 28 H -0.275 1.275 29 H -0.294 1.294 30 H -0.267 1.267 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.154 0.846 37 H 0.177 0.823 38 H 0.178 0.822 39 H 0.186 0.814 40 H 0.175 0.825 41 H 0.168 0.832 42 H 0.067 0.933 43 H 0.039 0.961 44 H 0.042 0.958 45 H 0.035 0.965 46 H 0.361 0.639 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 4.149 -38.737 39.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 H 0.135 0.865 4 C -0.019 4.019 5 N -0.347 5.347 6 C 0.360 3.640 7 O -0.453 6.453 8 C -0.145 4.145 9 C -0.070 4.070 10 C -0.141 4.141 11 C -0.076 4.076 12 C -0.129 4.129 13 C -0.071 4.071 14 C -0.196 4.196 15 C -0.051 4.051 16 N -0.230 5.230 17 C 0.007 3.993 18 C -0.005 4.005 19 C -0.119 4.119 20 H 0.097 0.903 21 C 0.044 3.956 22 N -0.409 5.409 23 C -0.359 4.359 24 H 0.083 0.917 25 C -0.251 4.251 26 N -0.631 5.631 27 Si 0.773 3.227 28 H -0.201 1.201 29 H -0.221 1.221 30 H -0.193 1.193 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.171 0.829 37 H 0.194 0.806 38 H 0.195 0.805 39 H 0.203 0.797 40 H 0.193 0.807 41 H 0.185 0.815 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.193 0.807 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.166 3.516 -37.461 38.128 hybrid contribution 1.203 -1.117 0.659 1.769 sum 7.370 2.399 -36.803 37.610 Atomic orbital electron populations 1.21873 0.92914 1.01937 1.03455 1.22222 0.97400 0.99718 0.90836 0.86549 1.22550 1.01465 0.79961 0.97949 1.48493 1.62877 1.12603 1.10752 1.18239 0.76084 0.82643 0.86988 1.90774 1.51551 1.28312 1.74623 1.19692 0.96520 1.06163 0.92164 1.21807 0.97402 0.92566 0.95221 1.21290 0.99274 1.00337 0.93164 1.21688 0.91215 0.93091 1.01608 1.19162 0.98379 1.02648 0.92684 1.22028 0.90327 0.92614 1.02172 1.22272 1.02471 1.00867 0.93996 1.23529 0.93291 0.93618 0.94665 1.68060 1.02529 1.11351 1.41096 1.18898 0.92917 0.96312 0.91209 1.22137 0.99595 0.98016 0.80756 1.22520 1.00348 0.93691 0.95336 0.90319 1.20786 0.94722 0.95980 0.84132 1.42874 1.25051 1.65870 1.07098 1.19069 1.03386 1.27106 0.86348 0.91652 1.25372 1.02039 1.02323 0.95335 1.69852 1.41634 1.50674 1.00968 0.85558 0.81168 0.78543 0.77406 1.20096 1.22065 1.19263 0.93658 0.92096 0.89331 0.90586 0.87940 0.82872 0.80560 0.80452 0.79694 0.80746 0.81484 0.91515 0.94199 0.94027 0.94692 0.80673 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.91 71.98 0.57 -2.01 16 2 C -0.08 -1.63 3.47 -9.61 -0.03 -1.66 16 3 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.10 1.95 5.49 86.73 0.48 2.43 16 5 N -0.61 -18.29 3.33 -815.63 -2.71 -21.00 16 6 C 0.57 19.97 7.18 86.67 0.62 20.59 16 7 O -0.57 -26.23 16.58 -4.04 -0.07 -26.29 16 8 C -0.14 -3.78 5.42 -19.86 -0.11 -3.89 16 9 C -0.05 -0.80 8.40 22.54 0.19 -0.61 16 10 C -0.12 -1.09 9.93 21.98 0.22 -0.87 16 11 C -0.06 -0.52 9.75 22.37 0.22 -0.30 16 12 C -0.13 -2.11 5.74 -21.29 -0.12 -2.23 16 13 C -0.05 -0.49 9.90 22.52 0.22 -0.27 16 14 C -0.18 -2.23 10.03 22.13 0.22 -2.01 16 15 C 0.12 2.59 11.15 85.02 0.95 3.53 16 16 N -0.52 -16.29 9.26 -187.97 -1.74 -18.03 16 17 C 0.13 3.48 6.59 40.61 0.27 3.74 16 18 C 0.12 4.07 6.03 86.85 0.52 4.59 16 19 C -0.10 -2.99 2.91 -9.40 -0.03 -3.02 16 20 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 21 C 0.17 6.33 4.54 86.38 0.39 6.72 16 22 N -0.76 -37.30 5.35 -343.46 -1.84 -39.14 16 23 C -0.23 -13.40 10.47 84.03 0.88 -12.52 16 24 H 0.07 4.11 8.06 -2.91 -0.02 4.08 16 25 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 26 N -0.98 -64.58 13.97 21.65 0.30 -64.28 16 27 Si 0.94 48.95 27.74 68.60 1.90 50.86 16 28 H -0.27 -13.73 7.11 99.48 0.71 -13.03 16 29 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 30 H -0.27 -13.32 6.52 99.48 0.65 -12.67 16 31 H 0.04 0.94 7.35 -2.38 -0.02 0.92 16 32 H 0.06 1.21 7.12 -2.39 -0.02 1.19 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.32 5.41 -2.39 -0.01 1.30 16 36 H 0.15 1.83 6.09 -2.91 -0.02 1.82 16 37 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 38 H 0.18 0.03 8.06 -2.91 -0.02 0.00 16 39 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 40 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 41 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.07 2.35 7.48 -2.39 -0.02 2.33 16 43 H 0.04 1.67 7.99 -2.39 -0.02 1.65 16 44 H 0.04 1.51 8.05 -2.39 -0.02 1.49 16 45 H 0.04 1.32 6.94 -2.39 -0.02 1.30 16 46 H 0.36 17.61 5.53 -92.71 -0.51 17.10 16 47 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -92.15 378.53 2.19 -89.95 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.42 Total: 18.88 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.93 Total: 9.07 kcal Atomic # 7 Polarization: -136.47 SS G_CDS: -5.99 Total: -142.46 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.07 Total: -26.29 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.90 Total: 50.86 kcal Total: -92.15 2.19 -89.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569843680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.439 kcal (2) G-P(sol) polarization free energy of solvation -92.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds