Wall clock time and date at job start Tue Mar 31 2020 22:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 110.63876 * 2 1 4 4 C 1.54323 * 110.72025 * 236.85560 * 2 1 3 5 5 N 1.47027 * 107.26824 * 263.65262 * 4 2 1 6 6 C 1.34775 * 125.64438 * 181.02393 * 5 4 2 7 7 O 1.21546 * 119.99852 * 185.41203 * 6 5 4 8 8 C 1.47888 * 120.00182 * 5.41175 * 6 5 4 9 9 C 1.40594 * 119.73204 * 171.96447 * 8 6 5 10 10 C 1.35849 * 120.95537 * 179.97438 * 9 8 6 11 11 C 1.40487 * 119.87654 * 359.97438 * 10 9 8 12 12 C 1.40484 * 121.83735 * 180.02562 * 11 10 9 13 13 N 1.31211 * 119.94087 * 179.97438 * 12 11 10 14 14 C 1.32560 * 122.80534 * 0.02562 * 13 12 11 15 15 C 1.36225 * 121.84550 * 0.02562 * 14 13 12 16 16 C 1.40757 * 118.67195 * 359.97438 * 15 14 13 17 17 C 1.38533 * 119.72724 * 351.93800 * 8 6 5 18 18 C 1.47421 * 108.70438 * 1.28860 * 5 4 2 19 19 C 1.55130 * 104.72135 * 335.55112 * 18 5 4 20 20 H 1.08996 * 111.19723 * 279.18776 * 19 18 5 21 21 C 1.53008 * 110.93635 * 155.28672 * 19 18 5 22 22 N 1.46502 * 109.46511 * 72.96130 * 21 19 18 23 23 C 1.36947 * 119.99633 * 180.02562 * 22 21 19 24 24 H 1.07996 * 119.99497 * 359.97438 * 23 22 21 25 25 C 1.38806 * 119.99737 * 179.97438 * 23 22 21 26 26 N 1.31620 * 120.00354 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99789 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47203 * 59.99510 * 27 25 23 29 29 H 1.48501 * 109.47274 * 179.97438 * 27 25 23 30 30 H 1.48504 * 109.46727 * 299.99587 * 27 25 23 31 31 H 1.08996 * 109.47017 * 181.69150 * 1 2 3 32 32 H 1.09002 * 109.46840 * 301.69399 * 1 2 3 33 33 H 1.09000 * 109.46827 * 61.68862 * 1 2 3 34 34 H 1.08998 * 109.87925 * 144.23516 * 4 2 1 35 35 H 1.08999 * 110.01169 * 23.14373 * 4 2 1 36 36 H 1.08005 * 119.52147 * 359.97438 * 9 8 6 37 37 H 1.07996 * 120.06069 * 179.97438 * 10 9 8 38 38 H 1.07997 * 120.02829 * 0.23873 * 12 11 10 39 39 H 1.08000 * 119.07769 * 179.97438 * 14 13 12 40 40 H 1.07997 * 120.66184 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.36797 * 0.02562 * 17 8 6 42 42 H 1.09004 * 110.36631 * 94.48062 * 18 5 4 43 43 H 1.09003 * 110.36809 * 216.80713 * 18 5 4 44 44 H 1.09001 * 109.47148 * 192.95642 * 21 19 18 45 45 H 1.09000 * 109.47499 * 312.96165 * 21 19 18 46 46 H 0.97000 * 120.00754 * 359.97438 * 22 21 19 47 47 H 0.96995 * 120.00167 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 2.3757 -2.1507 -0.7414 6 6 2.8903 -3.1437 -1.4936 7 8 3.0064 -4.2606 -1.0285 8 6 3.3136 -2.8742 -2.8847 9 6 4.0030 -3.8635 -3.6077 10 6 4.4030 -3.6428 -4.8871 11 6 4.1272 -2.4110 -5.5039 12 6 4.5211 -2.1390 -6.8247 13 7 4.2436 -0.9757 -7.3644 14 6 3.5958 -0.0188 -6.7148 15 6 3.1718 -0.1819 -5.4306 16 6 3.4327 -1.4043 -4.7834 17 6 3.0272 -1.6493 -3.4649 18 6 2.0140 -2.2517 0.6841 19 6 2.0829 -0.7948 1.2125 20 1 3.1096 -0.5043 1.4348 21 6 1.1873 -0.6155 2.4400 22 7 1.8007 -1.2793 3.5930 23 6 1.1752 -1.2526 4.8111 24 1 0.2301 -0.7419 4.9216 25 6 1.7561 -1.8821 5.9034 26 7 2.9077 -2.5050 5.7684 27 14 0.9027 -1.8463 7.5647 28 1 -0.4320 -2.4868 7.4494 29 1 1.7220 -2.5859 8.5581 30 1 0.7395 -0.4381 8.0070 31 1 -0.3633 -1.0272 0.0303 32 1 -0.3633 0.5399 0.8744 33 1 -0.3633 0.4874 -0.9048 34 1 2.9852 -0.3162 -1.5800 35 1 1.3272 -0.8251 -1.9998 36 1 4.2177 -4.8127 -3.1392 37 1 4.9320 -4.4127 -5.4290 38 1 5.0481 -2.8883 -7.3967 39 1 3.3995 0.9167 -7.2176 40 1 2.6452 0.6105 -4.9196 41 1 2.4974 -0.8914 -2.9069 42 1 1.0050 -2.6497 0.7923 43 1 2.7297 -2.8809 1.2134 44 1 1.0704 0.4473 2.6524 45 1 0.2099 -1.0565 2.2444 46 1 2.6493 -1.7384 3.4936 47 1 3.3134 -2.9451 6.5316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569851466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:50 Heat of formation + Delta-G solvation = 33.930969 kcal Electronic energy + Delta-G solvation = -28585.592566 eV Core-core repulsion = 24733.296152 eV Total energy + Delta-G solvation = -3852.296414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.17231 -41.20191 -39.40027 -37.96611 -36.55095 -34.65060 -33.88284 -32.87312 -32.43515 -31.09702 -30.10282 -28.01493 -27.28002 -25.93949 -24.96020 -24.39635 -23.69957 -22.81271 -21.24399 -20.55982 -19.36087 -18.91740 -18.38565 -17.92566 -17.42630 -16.85501 -16.68007 -16.63511 -15.97510 -15.91035 -15.33460 -15.32325 -15.17883 -14.84049 -14.71715 -14.58786 -14.33476 -14.10333 -13.94939 -13.65174 -13.64013 -13.20847 -13.03544 -13.00357 -12.91739 -12.75499 -12.65366 -12.26028 -12.05572 -11.88540 -11.60995 -11.56028 -11.32455 -11.23509 -11.14008 -10.90534 -10.47977 -10.23025 -9.80187 -9.11110 -8.99571 -7.94882 -5.24018 -0.84339 -0.33687 0.81803 1.40789 1.46421 1.49865 1.55870 1.75859 2.26047 2.55797 3.05868 3.17058 3.37348 3.38518 3.44406 3.54223 3.66666 3.76762 3.81522 3.83241 4.02622 4.04190 4.10311 4.18703 4.29836 4.33033 4.40100 4.51430 4.57360 4.60313 4.65454 4.74459 4.75886 4.80953 4.86478 4.91662 5.02351 5.05851 5.07797 5.17693 5.20461 5.24958 5.29701 5.33266 5.49999 5.51988 5.60262 5.73486 6.26879 6.34596 6.92099 6.99110 7.32804 8.09773 8.30617 9.28629 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.002254 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.505328 B =12417.894651 C =13290.333853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.123 0.877 4 C 0.085 3.915 5 N -0.606 5.606 6 C 0.558 3.442 7 O -0.585 6.585 8 C -0.120 4.120 9 C -0.095 4.095 10 C -0.080 4.080 11 C -0.110 4.110 12 C 0.141 3.859 13 N -0.507 5.507 14 C 0.062 3.938 15 C -0.140 4.140 16 C -0.049 4.049 17 C -0.096 4.096 18 C 0.122 3.878 19 C -0.094 4.094 20 H 0.078 0.922 21 C 0.166 3.834 22 N -0.749 5.749 23 C -0.243 4.243 24 H 0.080 0.920 25 C -0.080 4.080 26 N -0.972 5.972 27 Si 0.974 3.026 28 H -0.278 1.278 29 H -0.298 1.298 30 H -0.274 1.274 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.169 0.831 38 H 0.190 0.810 39 H 0.178 0.822 40 H 0.173 0.827 41 H 0.193 0.807 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.036 0.964 45 H 0.028 0.972 46 H 0.371 0.629 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 8.270 -29.442 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.141 0.859 4 C -0.035 4.035 5 N -0.338 5.338 6 C 0.349 3.651 7 O -0.466 6.466 8 C -0.124 4.124 9 C -0.114 4.114 10 C -0.100 4.100 11 C -0.113 4.113 12 C -0.030 4.030 13 N -0.215 5.215 14 C -0.080 4.080 15 C -0.160 4.160 16 C -0.054 4.054 17 C -0.114 4.114 18 C -0.001 4.001 19 C -0.114 4.114 20 H 0.096 0.904 21 C 0.040 3.960 22 N -0.392 5.392 23 C -0.374 4.374 24 H 0.098 0.902 25 C -0.272 4.272 26 N -0.623 5.623 27 Si 0.803 3.197 28 H -0.205 1.205 29 H -0.225 1.225 30 H -0.200 1.200 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.186 0.814 38 H 0.207 0.793 39 H 0.195 0.805 40 H 0.191 0.809 41 H 0.209 0.791 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.046 0.954 46 H 0.202 0.798 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.251 8.013 -29.980 31.034 hybrid contribution -0.065 -1.171 2.463 2.728 sum -0.316 6.843 -27.517 28.357 Atomic orbital electron populations 1.21880 0.93230 1.01734 1.03492 1.22308 0.97201 1.00076 0.90831 0.85913 1.23046 1.01882 0.80595 0.97992 1.48465 1.61493 1.12710 1.11135 1.18547 0.77121 0.83262 0.86195 1.90772 1.57663 1.23759 1.74451 1.19875 1.02987 0.96856 0.92670 1.20974 0.96629 0.98828 0.94923 1.21159 0.98514 0.96441 0.93856 1.19451 0.99768 0.95399 0.96642 1.23665 0.94465 0.94243 0.90671 1.67449 1.12705 1.02127 1.39209 1.22687 0.94354 0.98477 0.92504 1.22300 1.00557 0.96822 0.96295 1.18431 0.97700 0.95115 0.94159 1.23173 0.97163 0.96764 0.94275 1.22163 0.99582 0.98291 0.80078 1.22507 1.00373 0.93284 0.95224 0.90354 1.20796 0.94530 0.95689 0.84983 1.42658 1.25209 1.65015 1.06276 1.19616 1.03005 1.27194 0.87625 0.90248 1.25613 0.98246 1.01336 1.01985 1.69825 1.19818 1.41665 1.31003 0.85200 0.77398 0.77726 0.79379 1.20454 1.22495 1.19991 0.94066 0.91977 0.89344 0.87872 0.87364 0.85454 0.81354 0.79298 0.80467 0.80918 0.79126 0.92009 0.93878 0.94658 0.95409 0.79801 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 7.92 71.99 0.57 -1.87 16 2 C -0.09 -1.50 3.46 -9.60 -0.03 -1.53 16 3 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 4 C 0.09 1.37 4.45 86.73 0.39 1.76 16 5 N -0.61 -16.47 3.32 -832.69 -2.77 -19.24 16 6 C 0.56 17.36 7.80 86.80 0.68 18.04 16 7 O -0.58 -23.86 16.63 -3.86 -0.06 -23.93 16 8 C -0.12 -2.80 5.87 -20.08 -0.12 -2.92 16 9 C -0.09 -2.05 9.49 22.29 0.21 -1.83 16 10 C -0.08 -1.23 9.77 22.26 0.22 -1.01 16 11 C -0.11 -1.73 5.75 -21.26 -0.12 -1.85 16 12 C 0.14 1.90 11.04 85.33 0.94 2.84 16 13 N -0.51 -8.01 10.29 -195.50 -2.01 -10.03 16 14 C 0.06 0.75 11.07 84.11 0.93 1.68 16 15 C -0.14 -1.51 9.88 22.42 0.22 -1.28 16 16 C -0.05 -0.76 5.74 -21.29 -0.12 -0.88 16 17 C -0.10 -1.59 8.38 22.79 0.19 -1.40 16 18 C 0.12 4.08 5.99 86.93 0.52 4.60 16 19 C -0.09 -2.75 2.93 -9.32 -0.03 -2.78 16 20 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 21 C 0.17 6.14 4.55 86.38 0.39 6.53 16 22 N -0.75 -37.79 5.55 -343.43 -1.91 -39.70 16 23 C -0.24 -13.51 9.99 84.03 0.84 -12.67 16 24 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 25 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 26 N -0.97 -60.98 13.06 21.65 0.28 -60.70 16 27 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 28 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 29 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 30 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 31 H 0.04 0.84 7.35 -2.39 -0.02 0.83 16 32 H 0.06 1.15 7.13 -2.39 -0.02 1.13 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 1.21 6.66 -2.39 -0.02 1.20 16 35 H 0.11 1.17 6.50 -2.39 -0.02 1.15 16 36 H 0.13 2.99 7.63 -2.91 -0.02 2.97 16 37 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.19 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 41 H 0.19 2.11 2.71 -9.80 -0.03 2.09 16 42 H 0.06 2.19 7.48 -2.38 -0.02 2.17 16 43 H 0.04 1.78 8.09 -2.39 -0.02 1.76 16 44 H 0.04 1.25 8.05 -2.39 -0.02 1.23 16 45 H 0.03 1.03 6.95 -2.39 -0.02 1.02 16 46 H 0.37 20.39 7.67 -92.71 -0.71 19.68 16 47 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -80.22 378.33 1.98 -78.23 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.28 Total: 25.52 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 6.14 Total: 1.23 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -6.40 Total: -129.66 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.06 Total: -23.93 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -80.22 1.98 -78.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569851466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.166 kcal (2) G-P(sol) polarization free energy of solvation -80.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds