Wall clock time and date at job start Tue Mar 31 2020 22:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.79621 * 2 1 4 4 C 1.54942 * 110.73745 * 123.29240 * 2 1 3 5 5 N 1.48121 * 103.25159 * 155.71261 * 4 2 1 6 6 C 1.34782 * 127.03230 * 140.67281 * 5 4 2 7 7 O 1.21538 * 120.00128 * 176.25294 * 6 5 4 8 8 C 1.47886 * 119.99629 * 356.25442 * 6 5 4 9 9 C 1.40606 * 119.72829 * 214.39186 * 8 6 5 10 10 C 1.35842 * 120.95455 * 179.71251 * 9 8 6 11 11 C 1.40495 * 119.87790 * 0.56098 * 10 9 8 12 12 C 1.40483 * 121.84243 * 179.70051 * 11 10 9 13 13 N 1.31221 * 119.94184 * 180.02562 * 12 11 10 14 14 C 1.32557 * 122.80214 * 359.97438 * 13 12 11 15 15 C 1.36223 * 121.84503 * 0.02562 * 14 13 12 16 16 C 1.40756 * 118.67533 * 359.97438 * 15 14 13 17 17 C 1.38529 * 119.73565 * 34.66680 * 8 6 5 18 18 C 1.47476 * 105.93212 * 320.70899 * 5 4 2 19 19 C 1.54001 * 107.08746 * 25.44754 * 18 5 4 20 20 H 1.09007 * 110.32521 * 239.80107 * 19 18 5 21 21 C 1.53002 * 110.32761 * 117.68834 * 19 18 5 22 22 N 1.46503 * 109.46881 * 67.83874 * 21 19 18 23 23 C 1.36936 * 119.99798 * 179.97438 * 22 21 19 24 24 H 1.07999 * 120.00248 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00282 * 179.97438 * 23 22 21 26 26 N 1.31623 * 119.99765 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00552 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.46787 * 0.02562 * 27 25 23 29 29 H 1.48495 * 109.47165 * 119.99692 * 27 25 23 30 30 H 1.48494 * 109.47435 * 240.00545 * 27 25 23 31 31 H 1.08996 * 109.47570 * 183.28848 * 1 2 3 32 32 H 1.09005 * 109.47266 * 303.29112 * 1 2 3 33 33 H 1.09000 * 109.47359 * 63.28728 * 1 2 3 34 34 H 1.08999 * 110.65997 * 37.27194 * 4 2 1 35 35 H 1.09000 * 110.80357 * 274.21628 * 4 2 1 36 36 H 1.07998 * 119.51903 * 0.02562 * 9 8 6 37 37 H 1.07996 * 120.06357 * 180.28219 * 10 9 8 38 38 H 1.08000 * 120.03485 * 0.04093 * 12 11 10 39 39 H 1.08000 * 119.07301 * 179.97438 * 14 13 12 40 40 H 1.07999 * 120.65989 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.36240 * 0.02562 * 17 8 6 42 42 H 1.09007 * 109.91318 * 266.08824 * 18 5 4 43 43 H 1.09001 * 110.07413 * 144.89935 * 18 5 4 44 44 H 1.08995 * 109.47002 * 187.83685 * 21 19 18 45 45 H 1.08994 * 109.47116 * 307.84055 * 21 19 18 46 46 H 0.96998 * 120.00524 * 359.97438 * 22 21 19 47 47 H 0.97002 * 120.00054 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7954 1.2112 5 7 3.4279 -1.2100 0.7622 6 6 4.5538 -1.2472 1.5021 7 8 5.5841 -1.6752 1.0198 8 6 4.5356 -0.7672 2.9008 9 6 5.6688 -0.1273 3.4331 10 6 5.6772 0.3285 4.7128 11 6 4.5454 0.1515 5.5262 12 6 4.5114 0.6008 6.8568 13 7 3.4346 0.4152 7.5835 14 6 2.3496 -0.1878 7.1184 15 6 2.2808 -0.6600 5.8425 16 6 3.3976 -0.4980 5.0012 17 6 3.4044 -0.9568 3.6776 18 6 3.2874 -1.5728 -0.6603 19 6 2.0775 -0.7936 -1.2087 20 1 1.3209 -1.4834 -1.5829 21 6 2.5195 0.1622 -2.3187 22 7 2.9556 -0.6112 -3.4840 23 6 3.3975 0.0344 -4.6078 24 1 3.4250 1.1137 -4.6350 25 6 3.8112 -0.6983 -5.7119 26 7 3.7783 -2.0137 -5.6786 27 14 4.4134 0.1824 -7.2452 28 1 4.3523 1.6504 -7.0290 29 1 5.8152 -0.2179 -7.5276 30 1 3.5519 -0.1849 -8.3976 31 1 -0.3634 -1.0259 0.0589 32 1 -0.3634 0.5641 0.8591 33 1 -0.3634 0.4619 -0.9180 34 1 1.4558 -1.6668 1.4130 35 1 2.1457 -0.1593 2.0938 36 1 6.5433 0.0083 2.8141 37 1 6.5538 0.8221 5.1056 38 1 5.3706 1.0987 7.2814 39 1 1.4966 -0.3090 7.7697 40 1 1.3868 -1.1480 5.4833 41 1 2.5373 -1.4531 3.2673 42 1 3.1124 -2.6446 -0.7546 43 1 4.1876 -1.2942 -1.2082 44 1 1.6842 0.8033 -2.6000 45 1 3.3453 0.7771 -1.9611 46 1 2.9313 -1.5806 -3.4596 47 1 4.0677 -2.5257 -6.4500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569851467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:55 Heat of formation + Delta-G solvation = 37.732485 kcal Electronic energy + Delta-G solvation = -28570.489531 eV Core-core repulsion = 24718.357963 eV Total energy + Delta-G solvation = -3852.131568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.32410 -40.13956 -38.22582 -37.12158 -34.73870 -33.54411 -32.89801 -31.74911 -31.37533 -30.18178 -28.93463 -26.71671 -25.90587 -24.80126 -24.01117 -23.20240 -22.72767 -21.24802 -20.40663 -19.61241 -18.28578 -17.70355 -17.32959 -17.07546 -16.27545 -16.12078 -15.52877 -15.29324 -14.82409 -14.65194 -14.45683 -14.27781 -13.94940 -13.80560 -13.71486 -13.41753 -13.14357 -12.98936 -12.86897 -12.77023 -12.51547 -12.37762 -12.01307 -11.82803 -11.57396 -11.40742 -11.09828 -10.89852 -10.70482 -10.61079 -10.49712 -10.34570 -10.09942 -9.97863 -9.83767 -9.67615 -9.43792 -8.89583 -8.67391 -8.49242 -6.93451 -5.76722 -3.05779 -0.16575 0.36211 1.44690 2.29013 2.78652 3.05732 3.43807 3.49289 3.51598 3.67303 3.98002 4.07415 4.13857 4.37082 4.41492 4.45511 4.57231 4.63508 4.67925 4.77216 4.87093 4.91213 5.13756 5.22242 5.24966 5.27226 5.27823 5.40768 5.46394 5.52122 5.57619 5.64831 5.67420 5.72493 5.85692 5.89053 5.96134 6.03301 6.10463 6.13704 6.18515 6.21953 6.34107 6.39260 6.40744 6.69151 6.82856 7.47511 7.55518 7.70340 8.06325 8.41756 9.53197 10.09555 10.44089 11.46112 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.002351 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.235693 B =11906.133789 C =12681.028667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.085 0.915 4 C 0.091 3.909 5 N -0.611 5.611 6 C 0.568 3.432 7 O -0.526 6.526 8 C -0.090 4.090 9 C -0.073 4.073 10 C -0.090 4.090 11 C -0.100 4.100 12 C 0.145 3.855 13 N -0.486 5.486 14 C 0.073 3.927 15 C -0.147 4.147 16 C -0.031 4.031 17 C -0.084 4.084 18 C 0.112 3.888 19 C -0.103 4.103 20 H 0.088 0.912 21 C 0.163 3.837 22 N -0.733 5.733 23 C -0.239 4.239 24 H 0.070 0.930 25 C -0.014 4.014 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.281 1.281 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.022 0.978 45 H 0.019 0.981 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 3.842 26.917 27.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.103 0.897 4 C -0.031 4.031 5 N -0.344 5.344 6 C 0.356 3.644 7 O -0.403 6.403 8 C -0.095 4.095 9 C -0.092 4.092 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.027 4.027 13 N -0.194 5.194 14 C -0.070 4.070 15 C -0.167 4.167 16 C -0.036 4.036 17 C -0.103 4.103 18 C -0.010 4.010 19 C -0.122 4.122 20 H 0.106 0.894 21 C 0.035 3.965 22 N -0.377 5.377 23 C -0.371 4.371 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.581 5.581 27 Si 0.738 3.262 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.219 1.219 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.182 0.818 39 H 0.171 0.829 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.040 0.960 45 H 0.037 0.963 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.727 3.964 27.456 28.141 hybrid contribution 0.271 -0.268 -1.859 1.898 sum -4.456 3.697 25.597 26.243 Atomic orbital electron populations 1.21735 0.93726 1.02047 1.02252 1.22299 0.96129 0.99757 0.93767 0.89650 1.23010 0.83068 0.98802 0.98268 1.48721 1.07896 1.65248 1.12489 1.17878 0.82451 0.79033 0.85018 1.90842 1.30796 1.46268 1.72358 1.20061 0.94985 1.00284 0.94152 1.20924 0.97335 0.95380 0.95544 1.20914 0.97367 0.99354 0.93364 1.19162 0.94864 1.00072 0.96165 1.23263 0.96024 0.94355 0.89011 1.67402 1.00182 1.13456 1.38376 1.22199 0.96007 0.94858 0.93958 1.21969 0.98484 1.01209 0.95042 1.18091 0.93932 0.97527 0.94054 1.21720 0.97655 0.98394 0.92505 1.22231 1.00531 0.98984 0.79229 1.22403 0.96544 0.97992 0.95256 0.89359 1.20695 0.96318 0.92791 0.86690 1.42370 1.78040 1.05705 1.11571 1.19243 1.35109 0.91273 0.91437 0.91181 1.24745 1.02271 0.95481 0.98458 1.69666 1.53835 1.04101 1.30468 0.86120 0.78181 0.78562 0.83346 1.20579 1.21838 1.21868 0.92363 0.92665 0.91626 0.90485 0.89756 0.84291 0.84149 0.81770 0.82853 0.84177 0.83834 0.91463 0.88937 0.95976 0.96290 0.78248 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.16 37.16 0.34 -0.92 16 2 C -0.10 -1.11 3.21 -88.75 -0.28 -1.40 16 3 H 0.09 1.00 7.87 -51.93 -0.41 0.60 16 4 C 0.09 0.91 4.74 -2.13 -0.01 0.90 16 5 N -0.61 -8.47 3.29 -170.86 -0.56 -9.03 16 6 C 0.57 8.62 7.58 -12.31 -0.09 8.52 16 7 O -0.53 -10.17 17.15 5.33 0.09 -10.08 16 8 C -0.09 -1.06 5.61 -104.95 -0.59 -1.65 16 9 C -0.07 -0.77 9.49 -39.55 -0.38 -1.14 16 10 C -0.09 -0.73 9.77 -39.59 -0.39 -1.12 16 11 C -0.10 -0.88 5.75 -106.78 -0.61 -1.49 16 12 C 0.15 1.15 11.04 -16.97 -0.19 0.96 16 13 N -0.49 -4.47 10.29 -13.14 -0.14 -4.60 16 14 C 0.07 0.56 11.07 -17.96 -0.20 0.36 16 15 C -0.15 -1.08 9.88 -39.36 -0.39 -1.46 16 16 C -0.03 -0.28 5.74 -106.83 -0.61 -0.89 16 17 C -0.08 -0.79 7.53 -38.78 -0.29 -1.08 16 18 C 0.11 1.81 6.35 -2.99 -0.02 1.79 16 19 C -0.10 -1.53 2.62 -89.25 -0.23 -1.77 16 20 H 0.09 1.31 7.85 -51.93 -0.41 0.91 16 21 C 0.16 3.17 5.33 -4.04 -0.02 3.15 16 22 N -0.73 -18.31 5.38 -59.91 -0.32 -18.63 16 23 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 24 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 27 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 31 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 35 H 0.08 0.71 5.58 -51.93 -0.29 0.42 16 36 H 0.14 1.46 7.96 -52.49 -0.42 1.04 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.14 1.10 5.68 -52.49 -0.30 0.80 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 1.86 7.56 -51.93 -0.39 1.46 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.38 10.05 7.56 -40.82 -0.31 9.74 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 385.55 15.07 5.81 5.81 Total: -1.00 -34.98 385.55 -10.34 -45.32 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.71 Total: 5.84 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -4.21 Total: -4.61 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.30 Total: -59.87 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.98 -10.34 -45.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569851467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.048 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds