Wall clock time and date at job start Tue Mar 31 2020 22:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.79621 * 2 1 4 4 C 1.54942 * 110.73745 * 123.29240 * 2 1 3 5 5 N 1.48121 * 103.25159 * 155.71261 * 4 2 1 6 6 C 1.34782 * 127.03230 * 140.67281 * 5 4 2 7 7 O 1.21538 * 120.00128 * 176.25294 * 6 5 4 8 8 C 1.47886 * 119.99629 * 356.25442 * 6 5 4 9 9 C 1.40606 * 119.72829 * 214.39186 * 8 6 5 10 10 C 1.35842 * 120.95455 * 179.71251 * 9 8 6 11 11 C 1.40495 * 119.87790 * 0.56098 * 10 9 8 12 12 C 1.40483 * 121.84243 * 179.70051 * 11 10 9 13 13 N 1.31221 * 119.94184 * 180.02562 * 12 11 10 14 14 C 1.32557 * 122.80214 * 359.97438 * 13 12 11 15 15 C 1.36223 * 121.84503 * 0.02562 * 14 13 12 16 16 C 1.40756 * 118.67533 * 359.97438 * 15 14 13 17 17 C 1.38529 * 119.73565 * 34.66680 * 8 6 5 18 18 C 1.47476 * 105.93212 * 320.70899 * 5 4 2 19 19 C 1.54001 * 107.08746 * 25.44754 * 18 5 4 20 20 H 1.09007 * 110.32521 * 239.80107 * 19 18 5 21 21 C 1.53002 * 110.32761 * 117.68834 * 19 18 5 22 22 N 1.46503 * 109.46881 * 67.83874 * 21 19 18 23 23 C 1.36936 * 119.99798 * 179.97438 * 22 21 19 24 24 H 1.07999 * 120.00248 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00282 * 179.97438 * 23 22 21 26 26 N 1.31623 * 119.99765 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00552 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.46787 * 0.02562 * 27 25 23 29 29 H 1.48495 * 109.47165 * 119.99692 * 27 25 23 30 30 H 1.48494 * 109.47435 * 240.00545 * 27 25 23 31 31 H 1.08996 * 109.47570 * 183.28848 * 1 2 3 32 32 H 1.09005 * 109.47266 * 303.29112 * 1 2 3 33 33 H 1.09000 * 109.47359 * 63.28728 * 1 2 3 34 34 H 1.08999 * 110.65997 * 37.27194 * 4 2 1 35 35 H 1.09000 * 110.80357 * 274.21628 * 4 2 1 36 36 H 1.07998 * 119.51903 * 0.02562 * 9 8 6 37 37 H 1.07996 * 120.06357 * 180.28219 * 10 9 8 38 38 H 1.08000 * 120.03485 * 0.04093 * 12 11 10 39 39 H 1.08000 * 119.07301 * 179.97438 * 14 13 12 40 40 H 1.07999 * 120.65989 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.36240 * 0.02562 * 17 8 6 42 42 H 1.09007 * 109.91318 * 266.08824 * 18 5 4 43 43 H 1.09001 * 110.07413 * 144.89935 * 18 5 4 44 44 H 1.08995 * 109.47002 * 187.83685 * 21 19 18 45 45 H 1.08994 * 109.47116 * 307.84055 * 21 19 18 46 46 H 0.96998 * 120.00524 * 359.97438 * 22 21 19 47 47 H 0.97002 * 120.00054 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7954 1.2112 5 7 3.4279 -1.2100 0.7622 6 6 4.5538 -1.2472 1.5021 7 8 5.5841 -1.6752 1.0198 8 6 4.5356 -0.7672 2.9008 9 6 5.6688 -0.1273 3.4331 10 6 5.6772 0.3285 4.7128 11 6 4.5454 0.1515 5.5262 12 6 4.5114 0.6008 6.8568 13 7 3.4346 0.4152 7.5835 14 6 2.3496 -0.1878 7.1184 15 6 2.2808 -0.6600 5.8425 16 6 3.3976 -0.4980 5.0012 17 6 3.4044 -0.9568 3.6776 18 6 3.2874 -1.5728 -0.6603 19 6 2.0775 -0.7936 -1.2087 20 1 1.3209 -1.4834 -1.5829 21 6 2.5195 0.1622 -2.3187 22 7 2.9556 -0.6112 -3.4840 23 6 3.3975 0.0344 -4.6078 24 1 3.4250 1.1137 -4.6350 25 6 3.8112 -0.6983 -5.7119 26 7 3.7783 -2.0137 -5.6786 27 14 4.4134 0.1824 -7.2452 28 1 4.3523 1.6504 -7.0290 29 1 5.8152 -0.2179 -7.5276 30 1 3.5519 -0.1849 -8.3976 31 1 -0.3634 -1.0259 0.0589 32 1 -0.3634 0.5641 0.8591 33 1 -0.3634 0.4619 -0.9180 34 1 1.4558 -1.6668 1.4130 35 1 2.1457 -0.1593 2.0938 36 1 6.5433 0.0083 2.8141 37 1 6.5538 0.8221 5.1056 38 1 5.3706 1.0987 7.2814 39 1 1.4966 -0.3090 7.7697 40 1 1.3868 -1.1480 5.4833 41 1 2.5373 -1.4531 3.2673 42 1 3.1124 -2.6446 -0.7546 43 1 4.1876 -1.2942 -1.2082 44 1 1.6842 0.8033 -2.6000 45 1 3.3453 0.7771 -1.9611 46 1 2.9313 -1.5806 -3.4596 47 1 4.0677 -2.5257 -6.4500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569851467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:53 Heat of formation + Delta-G solvation = 15.433542 kcal Electronic energy + Delta-G solvation = -28571.456486 eV Core-core repulsion = 24718.357963 eV Total energy + Delta-G solvation = -3853.098523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.07021 -41.13036 -39.33141 -37.96550 -36.51652 -34.49800 -33.90894 -33.10706 -32.46343 -31.02169 -30.26241 -27.70407 -27.22169 -25.84588 -25.01931 -24.52807 -23.42754 -22.54001 -21.37229 -20.81989 -19.31772 -18.94270 -18.44185 -18.06152 -17.40542 -16.90231 -16.71873 -16.51175 -15.98278 -15.74766 -15.42129 -15.26890 -15.17439 -15.10833 -14.68157 -14.56586 -14.25264 -14.06081 -13.82301 -13.69691 -13.51573 -13.28289 -13.19280 -13.04570 -12.87658 -12.80863 -12.54514 -12.17746 -12.09542 -11.97377 -11.86167 -11.55185 -11.40041 -11.24265 -11.17970 -10.98772 -10.48941 -10.21794 -9.83626 -9.10757 -9.03590 -7.98323 -5.27311 -0.82373 -0.32629 0.81476 1.39240 1.44158 1.45786 1.55445 1.72790 2.16759 2.52966 3.03753 3.19040 3.35236 3.44086 3.48169 3.54705 3.65028 3.71010 3.77259 3.82431 4.01242 4.04414 4.15563 4.19339 4.32060 4.39525 4.45852 4.52221 4.56547 4.61065 4.63463 4.73515 4.74547 4.82221 4.87179 4.90983 4.98849 5.04242 5.06834 5.18261 5.19074 5.23634 5.27556 5.36673 5.45709 5.54510 5.58935 5.72299 6.24088 6.37812 6.91274 6.99338 7.30392 8.05431 8.28556 9.25319 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.002351 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.235693 B =11906.133789 C =12681.028667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 H 0.079 0.921 4 C 0.093 3.907 5 N -0.610 5.610 6 C 0.562 3.438 7 O -0.585 6.585 8 C -0.111 4.111 9 C -0.098 4.098 10 C -0.074 4.074 11 C -0.111 4.111 12 C 0.144 3.856 13 N -0.507 5.507 14 C 0.065 3.935 15 C -0.142 4.142 16 C -0.045 4.045 17 C -0.070 4.070 18 C 0.116 3.884 19 C -0.091 4.091 20 H 0.094 0.906 21 C 0.163 3.837 22 N -0.745 5.745 23 C -0.245 4.245 24 H 0.074 0.926 25 C -0.076 4.076 26 N -0.968 5.968 27 Si 0.973 3.027 28 H -0.266 1.266 29 H -0.295 1.295 30 H -0.289 1.289 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.171 0.829 38 H 0.191 0.809 39 H 0.178 0.822 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.031 0.969 45 H 0.005 0.995 46 H 0.374 0.626 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 5.064 29.705 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 H 0.098 0.902 4 C -0.028 4.028 5 N -0.341 5.341 6 C 0.353 3.647 7 O -0.466 6.466 8 C -0.115 4.115 9 C -0.117 4.117 10 C -0.093 4.093 11 C -0.113 4.113 12 C -0.028 4.028 13 N -0.216 5.216 14 C -0.078 4.078 15 C -0.162 4.162 16 C -0.050 4.050 17 C -0.088 4.088 18 C -0.007 4.007 19 C -0.111 4.111 20 H 0.113 0.887 21 C 0.037 3.963 22 N -0.387 5.387 23 C -0.377 4.377 24 H 0.092 0.908 25 C -0.268 4.268 26 N -0.619 5.619 27 Si 0.802 3.198 28 H -0.191 1.191 29 H -0.223 1.223 30 H -0.216 1.216 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.144 0.856 37 H 0.188 0.812 38 H 0.208 0.792 39 H 0.195 0.805 40 H 0.188 0.812 41 H 0.181 0.819 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.023 0.977 46 H 0.206 0.794 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.060 5.238 30.286 31.536 hybrid contribution 0.953 -0.600 -2.576 2.811 sum -6.108 4.638 27.709 28.751 Atomic orbital electron populations 1.21717 0.91282 1.03262 1.02947 1.22287 0.97953 0.98863 0.91941 0.90230 1.23319 0.80872 1.00246 0.98344 1.48804 1.09409 1.64584 1.11319 1.18546 0.81769 0.78033 0.86378 1.90794 1.32923 1.48957 1.73938 1.19833 0.96817 1.02567 0.92325 1.20925 0.96954 0.97113 0.96669 1.21164 0.98245 0.97893 0.92041 1.19399 0.95001 1.00149 0.96736 1.23681 0.96616 0.93946 0.88516 1.67461 1.00945 1.14084 1.39062 1.22672 0.96314 0.94179 0.94599 1.22263 0.98802 1.00596 0.94514 1.18331 0.94862 0.97730 0.94056 1.21838 0.97144 0.97393 0.92421 1.21983 0.98904 0.99126 0.80719 1.22277 0.95975 0.97512 0.95324 0.88748 1.20822 0.95745 0.93352 0.86383 1.42583 1.78065 1.05598 1.12497 1.19639 1.34069 0.91637 0.92377 0.90840 1.25586 1.03329 0.96263 1.01671 1.69820 1.55401 1.05529 1.31154 0.85075 0.77054 0.78155 0.79495 1.19053 1.22279 1.21592 0.91165 0.89940 0.92744 0.87466 0.87341 0.85614 0.81193 0.79190 0.80514 0.81214 0.81880 0.91560 0.93875 0.95081 0.97691 0.79360 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.16 71.98 0.66 -1.29 16 2 C -0.09 -1.84 3.21 -9.58 -0.03 -1.87 16 3 H 0.08 1.74 7.87 -2.39 -0.02 1.72 16 4 C 0.09 1.61 4.74 86.73 0.41 2.02 16 5 N -0.61 -17.07 3.29 -812.76 -2.67 -19.74 16 6 C 0.56 17.84 7.58 86.80 0.66 18.49 16 7 O -0.59 -24.57 17.15 -3.84 -0.07 -24.63 16 8 C -0.11 -2.60 5.61 -20.08 -0.11 -2.71 16 9 C -0.10 -2.08 9.49 22.29 0.21 -1.87 16 10 C -0.07 -1.10 9.77 22.26 0.22 -0.88 16 11 C -0.11 -1.68 5.75 -21.26 -0.12 -1.80 16 12 C 0.14 1.87 11.04 85.33 0.94 2.81 16 13 N -0.51 -7.85 10.29 -195.50 -2.01 -9.86 16 14 C 0.06 0.77 11.07 84.11 0.93 1.70 16 15 C -0.14 -1.53 9.88 22.42 0.22 -1.31 16 16 C -0.04 -0.68 5.74 -21.29 -0.12 -0.80 16 17 C -0.07 -1.15 7.53 22.79 0.17 -0.98 16 18 C 0.12 3.94 6.35 86.53 0.55 4.49 16 19 C -0.09 -2.74 2.62 -9.91 -0.03 -2.76 16 20 H 0.09 2.75 7.85 -2.38 -0.02 2.73 16 21 C 0.16 6.52 5.33 86.38 0.46 6.98 16 22 N -0.74 -38.55 5.38 -343.46 -1.85 -40.40 16 23 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 24 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 25 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 26 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 27 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 29 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 30 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 31 H 0.07 0.88 8.10 -2.39 -0.02 0.87 16 32 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 1.30 7.92 -2.39 -0.02 1.28 16 35 H 0.11 1.42 5.58 -2.39 -0.01 1.41 16 36 H 0.13 2.90 7.96 -2.91 -0.02 2.87 16 37 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 40 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 41 H 0.16 1.91 5.68 -2.91 -0.02 1.89 16 42 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.04 1.89 7.56 -2.39 -0.02 1.87 16 44 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.37 20.52 7.56 -92.71 -0.70 19.82 16 47 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -80.73 385.55 2.32 -78.40 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.29 Total: 24.27 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 6.33 Total: 2.96 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -6.25 Total: -130.33 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.07 Total: -24.63 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -80.73 2.32 -78.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569851467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.835 kcal (2) G-P(sol) polarization free energy of solvation -80.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds