Wall clock time and date at job start Tue Mar 31 2020 22:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.64013 * 2 1 4 4 C 1.54327 * 110.71935 * 123.13998 * 2 1 3 5 5 N 1.47024 * 107.26850 * 96.17477 * 4 2 1 6 6 C 1.34780 * 125.64493 * 178.97386 * 5 4 2 7 7 O 1.21546 * 119.99838 * 174.60273 * 6 5 4 8 8 C 1.47887 * 119.99843 * 354.60714 * 6 5 4 9 9 C 1.40602 * 119.72409 * 187.79712 * 8 6 5 10 10 C 1.35849 * 120.94603 * 179.74365 * 9 8 6 11 11 C 1.40488 * 119.88283 * 0.52990 * 10 9 8 12 12 C 1.40482 * 121.83934 * 179.71692 * 11 10 9 13 13 N 1.31219 * 119.94226 * 180.02562 * 12 11 10 14 14 C 1.32550 * 122.80254 * 359.97438 * 13 12 11 15 15 C 1.36226 * 121.84793 * 0.02562 * 14 13 12 16 16 C 1.40761 * 118.67808 * 359.97438 * 15 14 13 17 17 C 1.38530 * 119.73287 * 8.06951 * 8 6 5 18 18 C 1.47417 * 108.70468 * 358.93862 * 5 4 2 19 19 C 1.54911 * 104.83502 * 24.12745 * 18 5 4 20 20 H 1.09003 * 110.99902 * 81.06529 * 19 18 5 21 21 C 1.52999 * 111.00346 * 204.91362 * 19 18 5 22 22 N 1.46495 * 109.47377 * 287.19588 * 21 19 18 23 23 C 1.36939 * 119.99862 * 180.02562 * 22 21 19 24 24 H 1.08004 * 119.99945 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00052 * 180.02562 * 23 22 21 26 26 N 1.31617 * 119.99938 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00087 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47229 * 60.00125 * 27 25 23 29 29 H 1.48505 * 109.47067 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47023 * 299.99828 * 27 25 23 31 31 H 1.08996 * 109.47227 * 298.31275 * 1 2 3 32 32 H 1.09003 * 109.47007 * 58.31875 * 1 2 3 33 33 H 1.09003 * 109.46601 * 178.30992 * 1 2 3 34 34 H 1.08997 * 109.87778 * 215.58642 * 4 2 1 35 35 H 1.08996 * 109.88204 * 336.59578 * 4 2 1 36 36 H 1.07992 * 119.52657 * 0.02562 * 9 8 6 37 37 H 1.08006 * 120.06144 * 180.23399 * 10 9 8 38 38 H 1.07995 * 120.03209 * 0.04114 * 12 11 10 39 39 H 1.07997 * 119.07930 * 180.02562 * 14 13 12 40 40 H 1.08000 * 120.65935 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.36321 * 359.95896 * 17 8 6 42 42 H 1.08999 * 110.36766 * 142.97155 * 18 5 4 43 43 H 1.09008 * 110.36780 * 265.29071 * 18 5 4 44 44 H 1.08997 * 109.46980 * 47.20621 * 21 19 18 45 45 H 1.09004 * 109.46715 * 167.20050 * 21 19 18 46 46 H 0.97002 * 120.00342 * 0.02562 * 22 21 19 47 47 H 0.97003 * 120.00392 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2087 5 7 2.3717 -2.1519 0.7427 6 6 2.8851 -3.1452 1.4951 7 8 2.9982 -4.2629 1.0311 8 6 3.3109 -2.8752 2.8854 9 6 3.9947 -3.8671 3.6102 10 6 4.4017 -3.6439 4.8869 11 6 4.1297 -2.4108 5.5028 12 6 4.5262 -2.1382 6.8226 13 7 4.2522 -0.9736 7.3615 14 6 3.6057 -0.0160 6.7118 15 6 3.1784 -0.1800 5.4288 16 6 3.4355 -1.4037 4.7824 17 6 3.0277 -1.6491 3.4649 18 6 2.0127 -2.2520 -0.6836 19 6 2.0790 -0.7975 -1.2124 20 1 3.1061 -0.5097 -1.4366 21 6 1.1815 -0.6183 -2.4385 22 7 1.7914 -1.2849 -3.5917 23 6 1.1643 -1.2579 -4.8088 24 1 0.2203 -0.7448 -4.9186 25 6 1.7419 -1.8899 -5.9014 26 7 2.8921 -2.5155 -5.7675 27 14 0.8868 -1.8524 -7.5618 28 1 0.7276 -0.4440 -8.0049 29 1 1.7027 -2.5953 -8.5556 30 1 -0.4498 -2.4887 -7.4446 31 1 -0.3633 0.4874 0.9047 32 1 -0.3633 0.5397 -0.8746 33 1 -0.3633 -1.0273 -0.0303 34 1 2.9868 -0.3179 1.5781 35 1 1.3273 -0.8197 2.0002 36 1 4.2033 -4.8185 3.1438 37 1 4.9293 -4.4147 5.4292 38 1 5.0564 -2.8863 7.3932 39 1 3.4123 0.9205 7.2137 40 1 2.6529 0.6131 4.9177 41 1 2.4990 -0.8906 2.9067 42 1 2.7294 -2.8808 -1.2119 43 1 1.0040 -2.6502 -0.7939 44 1 0.2037 -1.0572 -2.2403 45 1 1.0663 0.4443 -2.6522 46 1 2.6395 -1.7454 -3.4932 47 1 3.2960 -2.9569 -6.5310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569851468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:58 Heat of formation + Delta-G solvation = 56.123811 kcal Electronic energy + Delta-G solvation = -28585.739630 eV Core-core repulsion = 24734.405569 eV Total energy + Delta-G solvation = -3851.334060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38892 -40.29122 -38.32510 -37.14208 -34.89023 -33.57527 -32.89198 -31.66797 -31.23972 -30.23842 -28.87297 -27.11102 -25.90314 -24.89038 -24.00888 -23.18744 -22.74790 -21.70874 -20.29241 -19.34528 -18.40356 -17.69703 -17.25817 -16.92255 -16.42189 -15.94273 -15.68933 -15.27317 -15.00317 -14.69550 -14.50628 -14.19663 -14.08251 -13.83199 -13.61856 -13.51136 -13.10921 -12.98688 -12.89580 -12.72805 -12.50489 -12.22553 -12.17945 -11.88449 -11.70518 -11.33966 -10.98531 -10.84413 -10.63662 -10.52084 -10.48455 -10.39349 -10.09587 -10.02168 -9.82239 -9.69562 -9.45071 -8.88747 -8.69599 -8.49187 -6.94718 -5.77197 -3.06825 -0.17008 0.35627 1.46103 2.25801 2.82304 3.12865 3.43538 3.47842 3.49199 3.71613 3.98058 4.06408 4.14043 4.33208 4.38703 4.45818 4.53422 4.63547 4.70205 4.74628 4.77097 4.92128 5.10001 5.15812 5.21421 5.27079 5.29157 5.33505 5.43939 5.53105 5.57477 5.69641 5.70480 5.74950 5.86726 5.88370 5.94727 5.97396 6.08641 6.12661 6.19770 6.24048 6.30973 6.37210 6.41217 6.64350 6.77611 7.40768 7.56204 7.67767 8.03894 8.40957 9.52104 10.08807 10.42782 11.45358 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023195 B = 0.002254 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.882425 B =12418.263484 C =13290.308375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.092 0.908 4 C 0.091 3.909 5 N -0.608 5.608 6 C 0.565 3.435 7 O -0.529 6.529 8 C -0.098 4.098 9 C -0.071 4.071 10 C -0.095 4.095 11 C -0.099 4.099 12 C 0.143 3.857 13 N -0.486 5.486 14 C 0.071 3.929 15 C -0.146 4.146 16 C -0.033 4.033 17 C -0.113 4.113 18 C 0.117 3.883 19 C -0.102 4.102 20 H 0.087 0.913 21 C 0.166 3.834 22 N -0.733 5.733 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.172 0.828 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.026 0.974 45 H 0.024 0.976 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.742 5.269 26.715 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.032 4.032 5 N -0.341 5.341 6 C 0.354 3.646 7 O -0.406 6.406 8 C -0.102 4.102 9 C -0.089 4.089 10 C -0.115 4.115 11 C -0.102 4.102 12 C -0.028 4.028 13 N -0.194 5.194 14 C -0.072 4.072 15 C -0.166 4.166 16 C -0.038 4.038 17 C -0.131 4.131 18 C -0.004 4.004 19 C -0.121 4.121 20 H 0.105 0.895 21 C 0.038 3.962 22 N -0.378 5.378 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.172 0.828 40 H 0.159 0.841 41 H 0.189 0.811 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.217 0.783 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.909 4.941 27.207 27.667 hybrid contribution -0.371 -0.296 -1.779 1.841 sum 0.539 4.645 25.429 25.855 Atomic orbital electron populations 1.21861 0.93854 1.02560 1.02042 1.22276 0.96831 0.99261 0.93498 0.88975 1.22671 0.99806 0.83055 0.97628 1.48423 1.62258 1.11066 1.12359 1.17920 0.77890 0.83885 0.84948 1.90817 1.55282 1.21414 1.73065 1.20071 1.00748 0.95034 0.94343 1.20972 0.95050 0.99132 0.93774 1.20911 0.99729 0.95840 0.94976 1.19208 0.99681 0.95244 0.96023 1.23258 0.94745 0.93921 0.90917 1.67393 1.12162 1.01424 1.38375 1.22199 0.94971 0.97900 0.92099 1.21982 1.01162 0.96944 0.96495 1.18166 0.97389 0.94057 0.94213 1.23040 0.98170 0.97716 0.94129 1.22404 1.01649 0.98039 0.78341 1.22637 1.01323 0.93283 0.94865 0.89506 1.20629 0.94119 0.96017 0.85434 1.42375 1.25663 1.64461 1.05272 1.19147 1.03088 1.28519 0.86592 0.91223 1.24753 0.97300 1.00663 0.98165 1.69647 1.18124 1.39804 1.30426 0.86268 0.78550 0.77409 0.83934 1.21275 1.21690 1.21253 0.92821 0.91205 0.92230 0.90466 0.90416 0.84090 0.84249 0.81821 0.82844 0.84143 0.81123 0.89638 0.90770 0.95659 0.95812 0.78261 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 7.91 37.16 0.29 -1.15 16 2 C -0.10 -1.03 3.47 -88.78 -0.31 -1.34 16 3 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.09 0.87 4.45 -3.06 -0.01 0.85 16 5 N -0.61 -8.20 3.33 -177.29 -0.59 -8.79 16 6 C 0.56 8.40 7.80 -12.31 -0.10 8.30 16 7 O -0.53 -9.88 16.63 5.33 0.09 -9.79 16 8 C -0.10 -1.15 5.87 -104.95 -0.62 -1.76 16 9 C -0.07 -0.75 9.49 -39.55 -0.38 -1.12 16 10 C -0.09 -0.79 9.77 -39.59 -0.39 -1.17 16 11 C -0.10 -0.89 5.75 -106.78 -0.61 -1.51 16 12 C 0.14 1.16 11.04 -16.97 -0.19 0.97 16 13 N -0.49 -4.54 10.29 -13.15 -0.14 -4.67 16 14 C 0.07 0.56 11.07 -17.97 -0.20 0.36 16 15 C -0.15 -1.09 9.88 -39.35 -0.39 -1.47 16 16 C -0.03 -0.31 5.74 -106.83 -0.61 -0.92 16 17 C -0.11 -1.07 8.39 -38.78 -0.33 -1.40 16 18 C 0.12 1.85 5.99 -2.53 -0.02 1.84 16 19 C -0.10 -1.49 2.91 -88.47 -0.26 -1.75 16 20 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 21 C 0.17 3.06 4.54 -4.04 -0.02 3.05 16 22 N -0.73 -18.00 5.55 -59.91 -0.33 -18.34 16 23 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 24 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 27 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.74 7.12 -51.93 -0.37 0.37 16 33 H 0.06 0.66 7.34 -51.93 -0.38 0.28 16 34 H 0.08 0.62 6.66 -51.93 -0.35 0.28 16 35 H 0.08 0.60 6.50 -51.93 -0.34 0.26 16 36 H 0.14 1.50 7.63 -52.49 -0.40 1.10 16 37 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.17 1.30 2.71 -59.81 -0.16 1.14 16 42 H 0.09 1.59 8.09 -51.93 -0.42 1.17 16 43 H 0.07 1.23 7.48 -51.92 -0.39 0.84 16 44 H 0.03 0.47 6.94 -51.93 -0.36 0.11 16 45 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 46 H 0.38 10.03 7.67 -40.82 -0.31 9.72 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -34.54 378.27 -10.34 -44.87 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.40 Total: 6.70 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -4.37 Total: -5.51 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.33 Total: -59.28 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.54 -10.34 -44.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569851468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.997 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds