Wall clock time and date at job start Tue Mar 31 2020 23:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47668 * 2 1 4 4 O 1.42905 * 109.47375 * 239.99565 * 2 1 3 5 5 C 1.42901 * 114.00011 * 90.00118 * 4 2 1 6 6 C 1.50695 * 109.46892 * 180.02562 * 5 4 2 7 7 C 1.35348 * 126.91454 * 359.67652 * 6 5 4 8 8 N 1.33781 * 106.49501 * 179.90732 * 7 6 5 9 9 N 1.28631 * 108.88628 * 0.37347 * 8 7 6 10 10 N 1.28715 * 110.17714 * 359.76407 * 9 8 7 11 11 H 0.97004 * 125.86758 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46957 * 119.99883 * 2 1 3 13 13 O 1.21280 * 120.00135 * 120.00274 * 12 2 1 14 14 N 1.34772 * 119.99933 * 299.99489 * 12 2 1 15 15 C 1.46506 * 120.00425 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.47456 * 180.02562 * 15 14 12 17 17 H 1.09003 * 109.67754 * 59.93079 * 16 15 14 18 18 C 1.53291 * 109.67996 * 180.44878 * 16 15 14 19 19 O 1.42978 * 109.21633 * 171.98643 * 18 16 15 20 20 C 1.42961 * 114.19771 * 297.47398 * 19 18 16 21 21 C 1.53300 * 109.22166 * 62.56321 * 20 19 18 22 22 N 1.47147 * 109.67832 * 299.40982 * 16 15 14 23 23 C 1.36941 * 120.98501 * 9.76661 * 22 16 15 24 24 H 1.08001 * 119.99823 * 328.83566 * 23 22 16 25 25 C 1.38811 * 119.99904 * 148.83982 * 23 22 16 26 26 N 1.31620 * 120.00268 * 349.20167 * 25 23 22 27 27 Si 1.86802 * 119.99758 * 169.20179 * 25 23 22 28 28 H 1.48501 * 109.47080 * 89.99886 * 27 25 23 29 29 H 1.48500 * 109.46891 * 209.99632 * 27 25 23 30 30 H 1.48494 * 109.47207 * 329.99717 * 27 25 23 31 31 H 1.09003 * 109.47015 * 300.00443 * 1 2 3 32 32 H 1.09001 * 109.46794 * 60.00605 * 1 2 3 33 33 H 1.08996 * 109.47027 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47015 * 300.00357 * 5 4 2 35 35 H 1.08992 * 109.46816 * 60.00089 * 5 4 2 36 36 H 1.07996 * 126.75374 * 0.05665 * 7 6 5 37 37 H 0.97003 * 120.00167 * 0.02562 * 14 12 2 38 38 H 1.09001 * 109.46557 * 300.00901 * 15 14 12 39 39 H 1.09000 * 109.46898 * 60.00045 * 15 14 12 40 40 H 1.09004 * 109.51096 * 291.94863 * 18 16 15 41 41 H 1.08994 * 109.51820 * 52.09666 * 18 16 15 42 42 H 1.08999 * 109.51193 * 302.64043 * 20 19 18 43 43 H 1.08994 * 109.55158 * 182.51115 * 20 19 18 44 44 H 1.09004 * 109.67604 * 187.97230 * 21 20 19 45 45 H 1.09004 * 109.71256 * 67.43941 * 21 20 19 46 46 H 0.97002 * 120.00278 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1828 -2.2941 6 6 2.7004 -0.6287 -3.4613 7 6 2.9473 -1.9593 -3.4799 8 7 3.3714 -2.2497 -4.7151 9 7 3.3935 -1.1690 -5.4125 10 7 2.9988 -0.1725 -4.6998 11 1 2.9279 0.7475 -4.9990 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1955 -0.9401 3.6509 16 6 1.6849 -0.2191 4.9001 17 1 0.5949 -0.2168 4.9028 18 6 2.2028 -0.9311 6.1549 19 8 1.8794 -0.1488 7.3071 20 6 2.4914 1.1430 7.3290 21 6 1.9875 1.9606 6.1342 22 7 2.1835 1.1652 4.9118 23 6 2.8110 1.6978 3.8173 24 1 3.3886 1.0615 3.1632 25 6 2.7048 3.0556 3.5488 26 7 1.8384 3.7918 4.2118 27 14 3.7916 3.8378 2.2463 28 1 3.1081 3.7769 0.9294 29 1 4.0509 5.2555 2.6043 30 1 5.0798 3.1030 2.1699 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.2539 0.6545 -2.5589 35 1 2.9320 0.9511 -2.0450 36 1 2.8237 -2.6511 -2.6598 37 1 1.1488 0.5387 2.5435 38 1 1.8325 -1.9679 3.6510 39 1 3.2854 -0.9397 3.6507 40 1 1.7342 -1.9118 6.2367 41 1 3.2843 -1.0482 6.0869 42 1 3.5741 1.0340 7.2649 43 1 2.2312 1.6543 8.2558 44 1 2.5516 2.8905 6.0617 45 1 0.9280 2.1830 6.2616 46 1 1.7639 4.7405 4.0239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575864808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:55 Heat of formation + Delta-G solvation = -17.576710 kcal Electronic energy + Delta-G solvation = -30438.731033 eV Core-core repulsion = 26173.351815 eV Total energy + Delta-G solvation = -4265.379218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.37523 -41.06375 -40.02723 -38.77872 -36.88073 -35.28457 -34.60717 -33.81873 -33.09686 -32.25577 -31.42822 -28.97367 -27.73221 -27.14631 -25.24440 -24.84872 -24.09859 -23.24955 -22.82941 -21.42828 -21.13094 -19.59442 -18.75052 -18.11411 -17.84194 -17.56393 -17.38355 -17.06646 -16.57595 -16.23133 -16.14679 -15.97372 -15.71064 -15.38145 -15.29365 -15.22024 -14.88242 -14.51677 -14.31317 -13.83828 -13.64433 -13.38979 -13.20684 -13.05737 -12.89181 -12.83798 -12.67937 -12.45854 -12.39928 -12.14334 -11.97947 -11.97753 -11.82811 -11.69842 -11.27808 -11.18857 -10.77460 -10.53946 -10.47653 -10.11416 -9.83296 -8.58844 -7.83168 -5.34699 0.44119 1.39754 1.41588 1.44534 1.50785 1.55999 1.70812 2.11502 2.47641 2.87915 3.05985 3.32638 3.44950 3.48342 3.68853 3.80743 3.96887 4.03305 4.06599 4.09975 4.24581 4.29915 4.33013 4.36560 4.44077 4.49456 4.62792 4.66340 4.68354 4.75835 4.77150 4.83744 5.02922 5.12705 5.14217 5.23191 5.33339 5.57653 5.65919 5.72320 5.85813 5.98092 6.32082 6.40296 6.72916 7.13596 7.31939 7.35667 7.79592 8.36719 9.21147 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.003052 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.471358 B = 9173.271298 C =10343.156171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 H 0.103 0.897 4 O -0.368 6.368 5 C 0.131 3.869 6 C -0.002 4.002 7 C -0.039 4.039 8 N -0.301 5.301 9 N -0.098 5.098 10 N -0.363 5.363 11 H 0.467 0.533 12 C 0.506 3.494 13 O -0.579 6.579 14 N -0.690 5.690 15 C 0.143 3.857 16 C 0.127 3.873 17 H 0.041 0.959 18 C 0.056 3.944 19 O -0.398 6.398 20 C 0.045 3.955 21 C 0.150 3.850 22 N -0.605 5.605 23 C -0.244 4.244 24 H 0.069 0.931 25 C -0.030 4.030 26 N -0.925 5.925 27 Si 0.940 3.060 28 H -0.265 1.265 29 H -0.300 1.300 30 H -0.288 1.288 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.193 0.807 37 H 0.414 0.586 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.117 0.883 41 H 0.047 0.953 42 H 0.041 0.959 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.008 0.992 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 -2.170 -7.890 9.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 H 0.121 0.879 4 O -0.286 6.286 5 C 0.052 3.948 6 C -0.136 4.136 7 C -0.196 4.196 8 N -0.168 5.168 9 N -0.078 5.078 10 N -0.089 5.089 11 H 0.317 0.683 12 C 0.292 3.708 13 O -0.459 6.459 14 N -0.342 5.342 15 C 0.019 3.981 16 C 0.021 3.979 17 H 0.058 0.942 18 C -0.023 4.023 19 O -0.317 6.317 20 C -0.033 4.033 21 C 0.024 3.976 22 N -0.331 5.331 23 C -0.374 4.374 24 H 0.086 0.914 25 C -0.226 4.226 26 N -0.571 5.571 27 Si 0.769 3.231 28 H -0.191 1.191 29 H -0.227 1.227 30 H -0.214 1.214 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.210 0.790 37 H 0.252 0.748 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.135 0.865 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.121 0.879 44 H 0.084 0.916 45 H 0.027 0.973 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.145 -3.558 -9.204 10.357 hybrid contribution 0.248 2.343 0.279 2.372 sum -2.897 -1.215 -8.925 9.462 Atomic orbital electron populations 1.22213 0.91210 1.03855 1.04793 1.21921 0.96620 0.96326 0.83402 0.87929 1.87938 1.87180 1.34367 1.19119 1.20809 1.02108 0.90080 0.81789 1.21896 1.06911 0.95705 0.89121 1.23630 1.04291 0.95473 0.96249 1.75081 1.17794 1.19365 1.04525 1.78200 1.18740 0.90744 1.20101 1.44872 1.43659 1.13002 1.07402 0.68312 1.20754 0.80263 0.84495 0.85317 1.90657 1.39765 1.28192 1.87320 1.45932 1.52372 1.31594 1.04346 1.21097 0.98492 0.95145 0.83404 1.21535 0.96680 0.86008 0.93669 0.94158 1.23004 0.99625 0.94566 0.85077 1.87807 1.72858 1.28383 1.42606 1.23221 0.96215 0.84001 0.99839 1.21230 0.97382 0.94365 0.84613 1.44281 1.67683 1.09227 1.11879 1.19287 1.22989 0.91946 1.03212 0.91378 1.25604 0.98680 0.98197 1.00150 1.70100 1.36436 1.06132 1.44390 0.85709 0.79262 0.77294 0.80867 1.19053 1.22652 1.21358 0.90291 0.88716 0.91540 0.87251 0.89379 0.78995 0.74793 0.90279 0.93341 0.86514 0.93472 0.94030 0.87906 0.91624 0.97345 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.42 71.98 0.68 -2.38 16 2 C 0.08 1.93 3.14 29.85 0.09 2.02 16 3 H 0.10 2.30 7.79 -2.39 -0.02 2.28 16 4 O -0.37 -9.08 8.91 -129.94 -1.16 -10.24 16 5 C 0.13 2.13 6.37 71.23 0.45 2.59 16 6 C 0.00 -0.03 7.28 41.35 0.30 0.27 16 7 C -0.04 -1.01 11.41 83.73 0.96 -0.06 16 8 N -0.30 -8.69 12.41 -58.25 -0.72 -9.41 16 9 N -0.10 -2.40 13.38 37.02 0.50 -1.90 16 10 N -0.36 -6.00 6.98 -47.79 -0.33 -6.33 16 11 H 0.47 3.26 8.96 -219.95 -1.97 1.29 16 12 C 0.51 16.76 7.23 87.66 0.63 17.39 16 13 O -0.58 -23.51 16.50 16.01 0.26 -23.25 16 14 N -0.69 -22.80 3.66 -463.05 -1.70 -24.50 16 15 C 0.14 4.78 4.45 86.38 0.38 5.17 16 16 C 0.13 4.49 3.21 44.97 0.14 4.63 16 17 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 18 C 0.06 1.75 6.29 72.08 0.45 2.21 16 19 O -0.40 -14.01 10.74 -148.98 -1.60 -15.61 16 20 C 0.05 1.60 6.99 72.08 0.50 2.10 16 21 C 0.15 6.45 5.38 86.36 0.46 6.92 16 22 N -0.60 -25.84 3.03 -673.72 -2.04 -27.88 16 23 C -0.24 -11.16 7.06 84.03 0.59 -10.57 16 24 H 0.07 3.17 5.81 -2.91 -0.02 3.16 16 25 C -0.03 -1.40 5.06 84.86 0.43 -0.97 16 26 N -0.93 -46.97 11.14 21.65 0.24 -46.73 16 27 Si 0.94 38.70 29.57 68.60 2.03 40.73 16 28 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 29 H -0.30 -12.89 7.11 99.48 0.71 -12.18 16 30 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 31 H 0.08 1.50 7.56 -2.39 -0.02 1.49 16 32 H 0.09 1.24 7.87 -2.39 -0.02 1.23 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.11 1.04 7.87 -2.39 -0.02 1.02 16 35 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 36 H 0.19 5.00 7.94 -2.91 -0.02 4.98 16 37 H 0.41 13.99 6.73 -92.71 -0.62 13.37 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 1.82 7.57 -2.39 -0.02 1.80 16 40 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.07 3.17 6.33 -2.39 -0.02 3.16 16 45 H 0.01 0.39 8.14 -2.38 -0.02 0.38 16 46 H 0.25 12.55 8.31 -92.71 -0.77 11.77 16 Total: -1.00 -67.48 376.85 0.00 -67.48 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -1.57 Total: 28.34 kcal Atomic # 6 Polarization: 23.22 SS G_CDS: 6.09 Total: 29.31 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -4.06 Total: -116.76 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -2.49 Total: -49.10 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -67.48 0.00 -67.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575864808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.905 kcal (2) G-P(sol) polarization free energy of solvation -67.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds