Wall clock time and date at job start Tue Mar 31 2020 23:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47274 * 2 1 4 4 O 1.45203 * 109.47127 * 119.99449 * 2 1 3 5 5 C 1.34696 * 117.00049 * 269.99560 * 4 2 1 6 6 O 1.21453 * 119.99826 * 0.02562 * 5 4 2 7 7 C 1.47891 * 119.99893 * 179.97438 * 5 4 2 8 8 N 1.34221 * 126.70661 * 0.03237 * 7 5 4 9 9 N 1.28979 * 107.25463 * 179.97438 * 8 7 5 10 10 N 1.28720 * 108.99534 * 359.97438 * 9 8 7 11 11 C 1.46500 * 125.31500 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47317 * 359.97438 * 11 10 9 13 13 C 1.53004 * 109.46979 * 119.98332 * 11 10 9 14 14 C 1.52998 * 109.47286 * 239.97684 * 11 10 9 15 15 N 1.28871 * 109.36859 * 359.73248 * 10 9 8 16 16 C 1.50704 * 109.47040 * 239.99541 * 2 1 3 17 17 O 1.21277 * 119.99609 * 256.02529 * 16 2 1 18 18 N 1.34770 * 119.99988 * 76.03049 * 16 2 1 19 19 C 1.46505 * 120.00163 * 5.36190 * 18 16 2 20 20 C 1.46492 * 119.99995 * 185.36709 * 18 16 2 21 21 C 1.50706 * 109.47383 * 89.99778 * 20 18 16 22 22 H 1.08003 * 119.99717 * 0.02562 * 21 20 18 23 23 C 1.37875 * 120.00132 * 180.02562 * 21 20 18 24 24 N 1.31519 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00189 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46850 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47021 * 119.99380 * 25 23 21 28 28 H 1.48492 * 109.47081 * 239.99812 * 25 23 21 29 29 H 1.08994 * 109.47116 * 186.14636 * 1 2 3 30 30 H 1.08996 * 109.47218 * 66.13882 * 1 2 3 31 31 H 1.09006 * 109.46975 * 306.14350 * 1 2 3 32 32 H 1.08995 * 109.47451 * 59.99488 * 12 11 10 33 33 H 1.08992 * 109.47421 * 180.02562 * 12 11 10 34 34 H 1.09005 * 109.46784 * 299.99879 * 12 11 10 35 35 H 1.09004 * 109.47367 * 59.99405 * 13 11 10 36 36 H 1.08997 * 109.47258 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.46829 * 299.99984 * 13 11 10 38 38 H 1.09005 * 109.46672 * 60.00209 * 14 11 10 39 39 H 1.09001 * 109.47152 * 179.97438 * 14 11 10 40 40 H 1.08995 * 109.47480 * 300.00854 * 14 11 10 41 41 H 1.09000 * 109.47126 * 84.82548 * 19 18 16 42 42 H 1.08997 * 109.47350 * 204.82954 * 19 18 16 43 43 H 1.09000 * 109.46993 * 324.82627 * 19 18 16 44 44 H 1.09007 * 109.47186 * 209.99873 * 20 18 16 45 45 H 1.09000 * 109.47111 * 329.99601 * 20 18 16 46 46 H 0.97005 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2179 0.0668 2.2849 6 8 1.9970 1.2607 2.2541 7 6 2.7097 -0.5624 3.5297 8 7 2.9955 -1.8608 3.7136 9 7 3.3928 -1.9961 4.9332 10 7 3.3674 -0.8466 5.5120 11 6 3.7488 -0.5904 6.9031 12 6 4.1818 -1.9010 7.5630 13 6 4.9092 0.4063 6.9384 14 6 2.5537 -0.0085 7.6607 15 7 2.9601 0.0445 4.6750 16 6 2.0323 -0.7105 -1.2304 17 8 2.4735 -1.8368 -1.1426 18 7 1.9913 -0.0944 -2.4283 19 6 1.5690 1.3057 -2.5179 20 6 2.3687 -0.8245 -3.6409 21 6 1.1505 -1.4921 -4.2251 22 1 0.1909 -1.3830 -3.7417 23 6 1.2609 -2.2422 -5.3767 24 7 2.4294 -2.3746 -5.9657 25 14 -0.2490 -3.0702 -6.1005 26 1 -1.4319 -2.7690 -5.2548 27 1 -0.4810 -2.5614 -7.4762 28 1 -0.0344 -4.5389 -6.1455 29 1 -0.3633 -1.0217 0.1100 30 1 -0.3633 0.4157 -0.9398 31 1 -0.3633 0.6062 0.8299 32 1 5.0332 -2.3157 7.0233 33 1 4.4652 -1.7105 8.5981 34 1 3.3550 -2.6109 7.5378 35 1 4.6006 1.3401 6.4683 36 1 5.1933 0.5967 7.9734 37 1 5.7607 -0.0082 6.3986 38 1 1.7270 -0.7186 7.6355 39 1 2.8374 0.1817 8.6958 40 1 2.2450 0.9251 7.1906 41 1 2.4230 1.9556 -2.3269 42 1 1.1774 1.5040 -3.5156 43 1 0.7926 1.4990 -1.7778 44 1 2.7861 -0.1288 -4.3689 45 1 3.1135 -1.5807 -3.3927 46 1 2.5070 -2.9020 -6.7761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645939436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:40 Heat of formation + Delta-G solvation = 21.020555 kcal Electronic energy + Delta-G solvation = -29546.223601 eV Core-core repulsion = 25282.518086 eV Total energy + Delta-G solvation = -4263.705515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.78157 -40.72025 -38.94461 -38.13614 -36.58772 -34.88092 -33.88253 -33.05234 -32.71784 -31.55906 -28.28841 -28.20407 -27.78930 -26.44099 -25.99481 -24.86465 -24.27022 -22.65086 -21.37674 -21.04786 -18.92475 -18.49819 -17.78943 -17.28884 -16.95539 -16.53091 -16.14713 -15.97112 -15.27936 -14.85061 -14.81990 -14.63640 -14.43190 -14.23794 -13.65114 -13.53813 -13.27171 -13.15455 -12.99201 -12.88415 -12.54428 -12.48431 -12.35984 -12.20398 -12.13852 -12.07381 -11.78412 -11.74376 -11.47588 -11.37191 -11.33091 -11.23387 -11.08835 -10.89984 -10.78996 -10.74280 -10.57687 -10.16695 -9.63016 -8.92156 -8.44408 -7.71262 -6.05113 -4.10296 0.57175 1.10882 1.16678 2.06934 2.59074 3.23221 3.30422 3.38484 3.41996 3.51767 3.59464 3.86252 3.95723 4.02331 4.31452 4.43916 4.73767 4.78093 4.79347 4.79936 4.87510 4.96191 4.99162 5.00100 5.02880 5.05761 5.22471 5.29619 5.35342 5.44024 5.51715 5.56179 5.63283 5.70207 5.74096 5.87127 6.05093 6.14986 6.25234 6.98228 7.34937 7.41564 7.49348 7.90429 7.91211 8.20460 8.29061 8.84537 8.99550 9.54842 11.03032 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024521 B = 0.002158 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.598998 B =12972.430319 C =13339.876742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.071 3.929 3 H 0.107 0.893 4 O -0.299 6.299 5 C 0.571 3.429 6 O -0.476 6.476 7 C 0.144 3.856 8 N -0.221 5.221 9 N -0.053 5.053 10 N -0.123 5.123 11 C 0.175 3.825 12 C -0.154 4.154 13 C -0.162 4.162 14 C -0.161 4.161 15 N -0.237 5.237 16 C 0.510 3.490 17 O -0.513 6.513 18 N -0.596 5.596 19 C 0.073 3.927 20 C 0.245 3.755 21 C -0.528 4.528 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.282 1.282 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.036 0.964 45 H 0.047 0.953 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 8.999 28.867 30.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.013 3.987 3 H 0.125 0.875 4 O -0.212 6.212 5 C 0.409 3.591 6 O -0.359 6.359 7 C -0.137 4.137 8 N -0.096 5.096 9 N -0.046 5.046 10 N -0.038 5.038 11 C 0.095 3.905 12 C -0.212 4.212 13 C -0.220 4.220 14 C -0.219 4.219 15 N -0.093 5.093 16 C 0.294 3.706 17 O -0.388 6.388 18 N -0.330 5.330 19 C -0.071 4.071 20 C 0.127 3.873 21 C -0.567 4.567 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.208 1.208 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.017 8.223 29.033 30.243 hybrid contribution -1.012 0.072 -0.877 1.341 sum 1.004 8.295 28.156 29.370 Atomic orbital electron populations 1.22202 0.91611 1.04538 1.04062 1.22891 0.96433 0.97466 0.81906 0.87490 1.86742 1.75854 1.39890 1.18685 1.18532 0.74812 0.83881 0.81911 1.90889 1.46897 1.14621 1.83539 1.23674 1.07270 0.89042 0.93675 1.76434 1.11888 1.15157 1.06094 1.79023 1.15599 1.08596 1.01375 1.50838 1.37970 1.02216 1.12725 1.21602 0.97661 0.99502 0.71718 1.22127 1.03822 0.93970 1.01328 1.22283 0.96122 0.98890 1.04695 1.22277 0.96010 1.02629 1.01016 1.74953 1.14902 1.20055 0.99353 1.19645 0.80437 0.86894 0.83653 1.90729 1.44742 1.18212 1.85153 1.48067 1.65387 1.11927 1.07587 1.21849 0.99023 0.82640 1.03614 1.19387 0.96744 0.92106 0.79091 1.21463 0.94805 1.31333 1.09124 0.92256 1.24946 0.96269 0.96144 0.96775 1.69946 1.23150 1.40446 1.19663 0.86425 0.82793 0.79406 0.78692 1.19764 1.20975 1.20833 0.90283 0.89053 0.91090 0.90301 0.88931 0.90335 0.90169 0.88798 0.91104 0.91146 0.88799 0.90188 0.93360 0.90001 0.92231 0.94564 0.93498 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.19 37.16 0.34 -2.06 16 2 C 0.07 1.22 2.14 -27.88 -0.06 1.16 16 3 H 0.11 1.62 6.31 -51.93 -0.33 1.29 16 4 O -0.30 -5.45 9.48 -47.00 -0.45 -5.89 16 5 C 0.57 9.35 7.95 34.68 0.28 9.62 16 6 O -0.48 -7.86 16.36 -19.23 -0.31 -8.18 16 7 C 0.14 2.22 8.18 -156.23 -1.28 0.94 16 8 N -0.22 -3.51 12.54 32.08 0.40 -3.11 16 9 N -0.05 -0.69 12.21 60.35 0.74 0.05 16 10 N -0.12 -1.30 3.72 0.52 0.00 -1.30 16 11 C 0.18 1.02 1.30 -131.82 -0.17 0.85 16 12 C -0.15 -0.62 7.90 37.16 0.29 -0.33 16 13 C -0.16 -0.71 8.66 37.16 0.32 -0.39 16 14 C -0.16 -0.68 8.66 37.16 0.32 -0.36 16 15 N -0.24 -3.08 11.85 32.10 0.38 -2.70 16 16 C 0.51 11.14 6.95 -10.99 -0.08 11.06 16 17 O -0.51 -13.64 16.13 -13.54 -0.22 -13.86 16 18 N -0.60 -12.75 2.86 -182.95 -0.52 -13.27 16 19 C 0.07 1.14 9.79 59.85 0.59 1.72 16 20 C 0.25 6.42 5.18 -5.20 -0.03 6.40 16 21 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 22 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 25 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.23 6.33 -51.93 -0.33 0.90 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.28 8.03 -51.93 -0.42 0.87 16 43 H 0.06 0.77 4.92 -51.93 -0.26 0.51 16 44 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 45 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 394.89 15.07 5.95 5.95 Total: -1.00 -36.47 394.89 -4.95 -41.42 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -6.75 Total: -5.17 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 0.11 Total: 15.07 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 1.74 Total: -46.16 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.98 Total: -27.93 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.47 -4.95 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645939436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.443 kcal (2) G-P(sol) polarization free energy of solvation -36.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds