Wall clock time and date at job start Tue Mar 31 2020 23:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47274 * 2 1 4 4 O 1.45203 * 109.47127 * 119.99449 * 2 1 3 5 5 C 1.34696 * 117.00049 * 269.99560 * 4 2 1 6 6 O 1.21453 * 119.99826 * 0.02562 * 5 4 2 7 7 C 1.47891 * 119.99893 * 179.97438 * 5 4 2 8 8 N 1.34221 * 126.70661 * 0.03237 * 7 5 4 9 9 N 1.28979 * 107.25463 * 179.97438 * 8 7 5 10 10 N 1.28720 * 108.99534 * 359.97438 * 9 8 7 11 11 C 1.46500 * 125.31500 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47317 * 359.97438 * 11 10 9 13 13 C 1.53004 * 109.46979 * 119.98332 * 11 10 9 14 14 C 1.52998 * 109.47286 * 239.97684 * 11 10 9 15 15 N 1.28871 * 109.36859 * 359.73248 * 10 9 8 16 16 C 1.50704 * 109.47040 * 239.99541 * 2 1 3 17 17 O 1.21277 * 119.99609 * 256.02529 * 16 2 1 18 18 N 1.34770 * 119.99988 * 76.03049 * 16 2 1 19 19 C 1.46505 * 120.00163 * 5.36190 * 18 16 2 20 20 C 1.46492 * 119.99995 * 185.36709 * 18 16 2 21 21 C 1.50706 * 109.47383 * 89.99778 * 20 18 16 22 22 H 1.08003 * 119.99717 * 0.02562 * 21 20 18 23 23 C 1.37875 * 120.00132 * 180.02562 * 21 20 18 24 24 N 1.31519 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00189 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46850 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47021 * 119.99380 * 25 23 21 28 28 H 1.48492 * 109.47081 * 239.99812 * 25 23 21 29 29 H 1.08994 * 109.47116 * 186.14636 * 1 2 3 30 30 H 1.08996 * 109.47218 * 66.13882 * 1 2 3 31 31 H 1.09006 * 109.46975 * 306.14350 * 1 2 3 32 32 H 1.08995 * 109.47451 * 59.99488 * 12 11 10 33 33 H 1.08992 * 109.47421 * 180.02562 * 12 11 10 34 34 H 1.09005 * 109.46784 * 299.99879 * 12 11 10 35 35 H 1.09004 * 109.47367 * 59.99405 * 13 11 10 36 36 H 1.08997 * 109.47258 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.46829 * 299.99984 * 13 11 10 38 38 H 1.09005 * 109.46672 * 60.00209 * 14 11 10 39 39 H 1.09001 * 109.47152 * 179.97438 * 14 11 10 40 40 H 1.08995 * 109.47480 * 300.00854 * 14 11 10 41 41 H 1.09000 * 109.47126 * 84.82548 * 19 18 16 42 42 H 1.08997 * 109.47350 * 204.82954 * 19 18 16 43 43 H 1.09000 * 109.46993 * 324.82627 * 19 18 16 44 44 H 1.09007 * 109.47186 * 209.99873 * 20 18 16 45 45 H 1.09000 * 109.47111 * 329.99601 * 20 18 16 46 46 H 0.97005 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2179 0.0668 2.2849 6 8 1.9970 1.2607 2.2541 7 6 2.7097 -0.5624 3.5297 8 7 2.9955 -1.8608 3.7136 9 7 3.3928 -1.9961 4.9332 10 7 3.3674 -0.8466 5.5120 11 6 3.7488 -0.5904 6.9031 12 6 4.1818 -1.9010 7.5630 13 6 4.9092 0.4063 6.9384 14 6 2.5537 -0.0085 7.6607 15 7 2.9601 0.0445 4.6750 16 6 2.0323 -0.7105 -1.2304 17 8 2.4735 -1.8368 -1.1426 18 7 1.9913 -0.0944 -2.4283 19 6 1.5690 1.3057 -2.5179 20 6 2.3687 -0.8245 -3.6409 21 6 1.1505 -1.4921 -4.2251 22 1 0.1909 -1.3830 -3.7417 23 6 1.2609 -2.2422 -5.3767 24 7 2.4294 -2.3746 -5.9657 25 14 -0.2490 -3.0702 -6.1005 26 1 -1.4319 -2.7690 -5.2548 27 1 -0.4810 -2.5614 -7.4762 28 1 -0.0344 -4.5389 -6.1455 29 1 -0.3633 -1.0217 0.1100 30 1 -0.3633 0.4157 -0.9398 31 1 -0.3633 0.6062 0.8299 32 1 5.0332 -2.3157 7.0233 33 1 4.4652 -1.7105 8.5981 34 1 3.3550 -2.6109 7.5378 35 1 4.6006 1.3401 6.4683 36 1 5.1933 0.5967 7.9734 37 1 5.7607 -0.0082 6.3986 38 1 1.7270 -0.7186 7.6355 39 1 2.8374 0.1817 8.6958 40 1 2.2450 0.9251 7.1906 41 1 2.4230 1.9556 -2.3269 42 1 1.1774 1.5040 -3.5156 43 1 0.7926 1.4990 -1.7778 44 1 2.7861 -0.1288 -4.3689 45 1 3.1135 -1.5807 -3.3927 46 1 2.5070 -2.9020 -6.7761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645939436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:39 Heat of formation + Delta-G solvation = -3.706418 kcal Electronic energy + Delta-G solvation = -29547.295843 eV Core-core repulsion = 25282.518086 eV Total energy + Delta-G solvation = -4264.777757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.78611 -42.08143 -40.58460 -38.73101 -37.95021 -36.70470 -34.88744 -34.85501 -33.92735 -32.96913 -29.72064 -28.72344 -28.53398 -27.64561 -27.33786 -25.93154 -25.78505 -24.30943 -22.62466 -21.90485 -20.49917 -19.68081 -18.78700 -18.68788 -18.44061 -17.98513 -17.51368 -17.34064 -17.01448 -16.29744 -16.21316 -15.42860 -15.28480 -15.25721 -14.88837 -14.81963 -14.38604 -14.14980 -14.08057 -13.71277 -13.57263 -13.50633 -13.37048 -13.34521 -13.24158 -13.12371 -12.88139 -12.84412 -12.71924 -12.69319 -12.52317 -12.46494 -12.34145 -12.24800 -12.20442 -12.15273 -12.11339 -11.68088 -11.61993 -10.67863 -10.64491 -9.52733 -8.22541 -6.37081 -0.50987 0.01999 0.25530 1.00846 1.37450 1.37999 1.40884 1.51429 1.57508 2.11501 2.39941 2.66739 2.85333 3.07858 3.33483 3.46749 3.48538 3.60165 3.62076 3.74589 3.75931 4.13980 4.29305 4.34584 4.44474 4.53433 4.55221 4.57541 4.61134 4.66162 4.72569 4.73308 4.79295 4.88983 4.99251 5.01903 5.08832 5.11321 5.12023 5.21545 5.21707 5.51920 5.78165 6.03564 6.08220 6.56693 6.72050 6.85998 7.18302 7.35820 8.85324 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024521 B = 0.002158 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.598998 B =12972.430319 C =13339.876742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.080 3.920 3 H 0.134 0.866 4 O -0.321 6.321 5 C 0.577 3.423 6 O -0.479 6.479 7 C 0.126 3.874 8 N -0.257 5.257 9 N -0.055 5.055 10 N -0.101 5.101 11 C 0.156 3.844 12 C -0.153 4.153 13 C -0.159 4.159 14 C -0.158 4.158 15 N -0.233 5.233 16 C 0.501 3.499 17 O -0.575 6.575 18 N -0.598 5.598 19 C 0.064 3.936 20 C 0.258 3.742 21 C -0.542 4.542 22 H 0.060 0.940 23 C 0.006 3.994 24 N -0.929 5.929 25 Si 0.969 3.031 26 H -0.264 1.264 27 H -0.269 1.269 28 H -0.284 1.284 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.132 0.868 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.132 0.868 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.032 0.968 45 H -0.001 1.001 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 10.739 31.255 33.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 H 0.151 0.849 4 O -0.234 6.234 5 C 0.415 3.585 6 O -0.362 6.362 7 C -0.155 4.155 8 N -0.132 5.132 9 N -0.047 5.047 10 N -0.018 5.018 11 C 0.079 3.921 12 C -0.211 4.211 13 C -0.217 4.217 14 C -0.216 4.216 15 N -0.090 5.090 16 C 0.288 3.712 17 O -0.455 6.455 18 N -0.331 5.331 19 C -0.077 4.077 20 C 0.137 3.863 21 C -0.580 4.580 22 H 0.078 0.922 23 C -0.193 4.193 24 N -0.568 5.568 25 Si 0.794 3.206 26 H -0.188 1.188 27 H -0.194 1.194 28 H -0.210 1.210 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.150 0.850 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.050 0.950 45 H 0.017 0.983 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.673 10.017 31.434 32.999 hybrid contribution -0.489 -0.416 -1.446 1.582 sum 0.184 9.602 29.989 31.489 Atomic orbital electron populations 1.22235 0.89162 1.04510 1.05953 1.22844 0.97989 0.97309 0.79579 0.84893 1.86731 1.76333 1.40959 1.19402 1.18545 0.74492 0.83751 0.81713 1.90865 1.47213 1.14476 1.83635 1.23562 1.08704 0.89174 0.94041 1.76395 1.13291 1.15905 1.07559 1.78944 1.15661 1.09419 1.00697 1.51529 1.35434 1.01181 1.13684 1.22390 0.99099 1.01173 0.69468 1.22214 1.03026 0.92691 1.03129 1.22348 0.94879 0.97551 1.06937 1.22338 0.94968 1.01573 1.02702 1.74927 1.14784 1.20347 0.98904 1.20505 0.79265 0.86411 0.85040 1.90691 1.47437 1.21089 1.86267 1.48047 1.64886 1.13911 1.06213 1.22204 1.01181 0.79389 1.04944 1.18889 0.95254 0.91348 0.80784 1.21734 0.95177 1.31745 1.09374 0.92191 1.25887 0.99451 0.96713 0.97258 1.70067 1.25360 1.41207 1.20206 0.85336 0.79021 0.77834 0.78435 1.18765 1.19430 1.21038 0.91610 0.87705 0.88247 0.91349 0.85077 0.91138 0.91327 0.84936 0.92110 0.91859 0.84982 0.91306 0.90743 0.89942 0.88797 0.94973 0.98299 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 9.19 71.98 0.66 -3.68 16 2 C 0.08 2.70 2.14 29.85 0.06 2.76 16 3 H 0.13 3.73 6.31 -2.39 -0.02 3.71 16 4 O -0.32 -11.83 9.48 -49.82 -0.47 -12.30 16 5 C 0.58 18.80 7.95 70.38 0.56 19.36 16 6 O -0.48 -15.18 16.36 19.99 0.33 -14.85 16 7 C 0.13 3.90 8.18 137.09 1.12 5.02 16 8 N -0.26 -8.43 12.54 -52.41 -0.66 -9.09 16 9 N -0.05 -1.44 12.21 37.02 0.45 -0.99 16 10 N -0.10 -2.08 3.72 -152.26 -0.57 -2.65 16 11 C 0.16 1.51 1.30 3.60 0.00 1.52 16 12 C -0.15 -0.89 7.90 71.98 0.57 -0.32 16 13 C -0.16 -1.04 8.66 71.98 0.62 -0.41 16 14 C -0.16 -0.92 8.66 71.98 0.62 -0.30 16 15 N -0.23 -5.96 11.85 -52.36 -0.62 -6.58 16 16 C 0.50 22.39 6.95 87.66 0.61 23.00 16 17 O -0.58 -32.27 16.13 15.24 0.25 -32.03 16 18 N -0.60 -25.84 2.86 -851.13 -2.43 -28.27 16 19 C 0.06 1.89 9.79 127.77 1.25 3.14 16 20 C 0.26 14.04 5.18 85.64 0.44 14.48 16 21 C -0.54 -31.06 9.39 25.60 0.24 -30.82 16 22 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 23 C 0.01 0.34 5.46 84.65 0.46 0.80 16 24 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 25 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 26 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.10 2.52 6.33 -2.39 -0.02 2.50 16 31 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.07 0.55 8.14 -2.38 -0.02 0.54 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.08 2.44 8.03 -2.39 -0.02 2.42 16 43 H 0.09 2.12 4.92 -2.39 -0.01 2.11 16 44 H 0.03 1.75 8.07 -2.38 -0.02 1.73 16 45 H 0.00 -0.07 7.36 -2.39 -0.02 -0.09 16 46 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -84.24 394.89 6.82 -77.42 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.00 Total: 4.01 kcal Atomic # 6 Polarization: 27.33 SS G_CDS: 7.23 Total: 34.56 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -3.54 Total: -103.81 kcal Atomic # 8 Polarization: -59.28 SS G_CDS: 0.10 Total: -59.18 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -84.24 6.82 -77.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645939436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.712 kcal (2) G-P(sol) polarization free energy of solvation -84.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds