Wall clock time and date at job start Tue Mar 31 2020 23:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 5 5 C 1.34699 * 116.99872 * 90.00103 * 4 2 1 6 6 O 1.21456 * 120.00138 * 359.97438 * 5 4 2 7 7 C 1.47889 * 119.99925 * 180.02562 * 5 4 2 8 8 N 1.34228 * 126.70410 * 0.02562 * 7 5 4 9 9 N 1.28982 * 107.24863 * 180.02562 * 8 7 5 10 10 N 1.28719 * 108.99952 * 0.02562 * 9 8 7 11 11 C 1.46501 * 125.31613 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46841 * 359.97438 * 11 10 9 13 13 C 1.52999 * 109.46589 * 119.97626 * 11 10 9 14 14 C 1.52995 * 109.47209 * 239.97972 * 11 10 9 15 15 N 1.28877 * 109.36818 * 359.72871 * 10 9 8 16 16 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 17 17 O 1.21285 * 120.00040 * 114.99997 * 16 2 1 18 18 N 1.34778 * 119.99902 * 295.00139 * 16 2 1 19 19 C 1.46493 * 120.00087 * 359.97438 * 18 16 2 20 20 C 1.46505 * 119.99823 * 179.97438 * 18 16 2 21 21 C 1.50697 * 109.46900 * 89.99912 * 20 18 16 22 22 H 1.07995 * 120.00161 * 0.02562 * 21 20 18 23 23 C 1.37880 * 120.00017 * 179.97438 * 21 20 18 24 24 N 1.31522 * 119.99535 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00201 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46882 * 90.00340 * 25 23 21 27 27 H 1.48495 * 109.47075 * 209.99813 * 25 23 21 28 28 H 1.48493 * 109.47218 * 330.00506 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.09000 * 109.47033 * 59.99738 * 12 11 10 33 33 H 1.09003 * 109.46702 * 179.97438 * 12 11 10 34 34 H 1.08998 * 109.47240 * 299.99616 * 12 11 10 35 35 H 1.09000 * 109.47388 * 60.00744 * 13 11 10 36 36 H 1.09003 * 109.46998 * 180.02562 * 13 11 10 37 37 H 1.09001 * 109.47397 * 299.99791 * 13 11 10 38 38 H 1.08998 * 109.47411 * 60.00054 * 14 11 10 39 39 H 1.09003 * 109.46939 * 180.02562 * 14 11 10 40 40 H 1.09009 * 109.47140 * 299.99817 * 14 11 10 41 41 H 1.09002 * 109.47115 * 89.99747 * 19 18 16 42 42 H 1.08998 * 109.47192 * 209.99907 * 19 18 16 43 43 H 1.08999 * 109.47064 * 329.99847 * 19 18 16 44 44 H 1.08997 * 109.46961 * 210.00478 * 20 18 16 45 45 H 1.09005 * 109.46984 * 329.99937 * 20 18 16 46 46 H 0.97003 * 119.99529 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2179 0.0668 -2.2850 6 8 1.9969 1.2607 -2.2542 7 6 2.7096 -0.5624 -3.5297 8 7 2.9944 -1.8611 -3.7139 9 7 3.3921 -1.9963 -4.9334 10 7 3.3680 -0.8467 -5.5119 11 6 3.7501 -0.5902 -6.9027 12 6 4.1835 -1.9009 -7.5624 13 6 2.5553 -0.0083 -7.6608 14 6 4.9106 0.4062 -6.9374 15 7 2.9501 0.0427 -4.6780 16 6 2.0324 -0.7104 1.2304 17 8 2.6531 -1.7467 1.1214 18 7 1.7920 -0.1942 2.4520 19 6 1.0427 1.0577 2.5836 20 6 2.2799 -0.8852 3.6481 21 6 3.6615 -0.3879 3.9870 22 1 4.1292 0.3676 3.3730 23 6 4.3282 -0.8966 5.0814 24 7 3.7584 -1.8162 5.8294 25 14 6.0405 -0.2797 5.5019 26 1 5.9361 0.8842 6.4184 27 1 6.8084 -1.3641 6.1647 28 1 6.7380 0.1315 4.2571 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 3.3568 -2.6109 -7.5377 33 1 4.4674 -1.7102 -8.5974 34 1 5.0347 -2.3154 -7.0223 35 1 2.2466 0.9255 -7.1908 36 1 2.8394 0.1821 -8.6958 37 1 1.7285 -0.7183 -7.6361 38 1 5.7617 -0.0084 -6.3973 39 1 5.1946 0.5973 -7.9723 40 1 4.6018 1.3400 -6.4673 41 1 -0.0214 0.8372 2.6678 42 1 1.3755 1.5882 3.4758 43 1 1.2166 1.6793 1.7053 44 1 1.6073 -0.6862 4.4824 45 1 2.3162 -1.9580 3.4586 46 1 4.2276 -2.1744 6.5991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645939437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:43 Heat of formation + Delta-G solvation = 22.628177 kcal Electronic energy + Delta-G solvation = -29603.003809 eV Core-core repulsion = 25339.368006 eV Total energy + Delta-G solvation = -4263.635803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.76041 -40.71048 -38.95482 -38.11872 -36.56880 -34.91375 -33.86280 -33.06772 -32.73516 -31.53038 -28.27466 -28.18647 -27.71775 -26.46232 -26.03557 -24.84496 -24.27407 -22.63664 -21.36744 -21.04078 -18.94636 -18.50054 -17.76897 -17.28034 -16.94695 -16.51824 -16.15316 -15.91367 -15.38286 -14.82862 -14.80476 -14.57448 -14.44342 -14.15880 -13.61036 -13.53364 -13.39480 -13.13983 -12.98761 -12.91971 -12.52951 -12.46807 -12.39606 -12.20564 -12.14567 -12.09233 -11.76700 -11.69761 -11.46525 -11.35705 -11.30748 -11.19043 -11.06039 -10.91003 -10.79105 -10.72312 -10.56638 -10.15632 -9.63831 -8.91419 -8.43250 -7.72072 -6.04362 -4.09117 0.59311 1.12894 1.18482 2.08477 2.61409 3.25780 3.31503 3.38386 3.43482 3.53048 3.60646 3.87976 3.96835 4.02481 4.32153 4.45408 4.73466 4.79451 4.80450 4.81853 4.87528 4.95546 4.97765 5.01620 5.03913 5.04423 5.23626 5.30339 5.36729 5.45976 5.49068 5.58079 5.62499 5.63153 5.75793 5.84643 5.97229 6.14177 6.22233 6.97916 7.36213 7.40747 7.49066 7.91543 7.92756 8.21436 8.28975 8.85554 9.00263 9.55828 11.03796 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.002383 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.732333 B =11746.811137 C =12586.195401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.070 3.930 3 H 0.111 0.889 4 O -0.298 6.298 5 C 0.572 3.428 6 O -0.476 6.476 7 C 0.145 3.855 8 N -0.221 5.221 9 N -0.053 5.053 10 N -0.123 5.123 11 C 0.175 3.825 12 C -0.154 4.154 13 C -0.161 4.161 14 C -0.162 4.162 15 N -0.237 5.237 16 C 0.508 3.492 17 O -0.513 6.513 18 N -0.595 5.595 19 C 0.075 3.925 20 C 0.247 3.753 21 C -0.528 4.528 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.037 0.963 45 H 0.046 0.954 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 6.204 -28.178 29.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 H 0.128 0.872 4 O -0.211 6.211 5 C 0.409 3.591 6 O -0.359 6.359 7 C -0.136 4.136 8 N -0.096 5.096 9 N -0.046 5.046 10 N -0.038 5.038 11 C 0.095 3.905 12 C -0.212 4.212 13 C -0.219 4.219 14 C -0.220 4.220 15 N -0.092 5.092 16 C 0.292 3.708 17 O -0.387 6.387 18 N -0.329 5.329 19 C -0.069 4.069 20 C 0.128 3.872 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.363 5.435 -28.354 29.198 hybrid contribution 0.798 0.891 0.690 1.381 sum -3.565 6.326 -27.663 28.601 Atomic orbital electron populations 1.22316 0.91880 1.04435 1.04265 1.22848 0.96085 0.97744 0.82110 0.87185 1.86723 1.75912 1.39840 1.18619 1.18517 0.74794 0.83876 0.81882 1.90892 1.46904 1.14597 1.83536 1.23663 1.07296 0.89098 0.93547 1.76431 1.11975 1.15132 1.06039 1.79016 1.15616 1.08544 1.01434 1.50835 1.37778 1.02300 1.12848 1.21601 0.97647 0.99501 0.71730 1.22129 1.03817 0.93965 1.01328 1.22275 0.96002 1.02623 1.01012 1.22285 0.96151 0.98899 1.04690 1.74956 1.14786 1.20121 0.99383 1.19654 0.81398 0.86032 0.83700 1.90742 1.39240 1.23169 1.85587 1.48061 1.54133 1.23949 1.06760 1.21858 0.95406 0.86715 1.02880 1.19365 0.94307 0.93846 0.79638 1.21423 1.01032 1.23025 1.11251 0.92409 1.24934 0.98205 0.94876 0.96058 1.69934 1.38137 1.27979 1.17216 0.86482 0.84071 0.78342 0.78461 1.20622 1.21040 1.19881 0.88891 0.90599 0.91145 0.90349 0.88941 0.90288 0.90182 0.88814 0.91163 0.91068 0.88799 0.90174 0.93049 0.90224 0.92334 0.94530 0.93556 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.28 37.16 0.34 -1.90 16 2 C 0.07 1.20 2.17 -27.89 -0.06 1.14 16 3 H 0.11 1.74 6.15 -51.93 -0.32 1.42 16 4 O -0.30 -5.49 9.43 -47.15 -0.44 -5.93 16 5 C 0.57 9.58 7.95 34.68 0.28 9.86 16 6 O -0.48 -8.08 16.36 -19.23 -0.31 -8.40 16 7 C 0.14 2.28 8.18 -156.23 -1.28 1.00 16 8 N -0.22 -3.58 12.54 32.08 0.40 -3.17 16 9 N -0.05 -0.70 12.21 60.35 0.74 0.03 16 10 N -0.12 -1.34 3.72 0.52 0.00 -1.34 16 11 C 0.18 1.07 1.30 -131.82 -0.17 0.90 16 12 C -0.15 -0.66 7.90 37.16 0.29 -0.37 16 13 C -0.16 -0.71 8.66 37.16 0.32 -0.38 16 14 C -0.16 -0.79 8.66 37.16 0.32 -0.46 16 15 N -0.24 -3.16 11.85 32.10 0.38 -2.78 16 16 C 0.51 11.10 7.10 -10.99 -0.08 11.02 16 17 O -0.51 -13.69 16.09 -14.05 -0.23 -13.92 16 18 N -0.60 -12.67 2.86 -182.96 -0.52 -13.19 16 19 C 0.08 1.16 8.92 59.84 0.53 1.69 16 20 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 21 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 22 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 25 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 29 H 0.09 1.04 5.12 -51.93 -0.27 0.78 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 40 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.05 0.65 7.02 -51.93 -0.36 0.28 16 42 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 43 H 0.06 0.75 6.08 -51.93 -0.32 0.44 16 44 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 45 H 0.05 1.37 7.42 -51.93 -0.39 0.98 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -36.95 392.94 -4.98 -41.92 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -6.68 Total: -5.50 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 0.06 Total: 15.18 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 1.74 Total: -46.39 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.99 Total: -28.24 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.95 -4.98 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645939437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.550 kcal (2) G-P(sol) polarization free energy of solvation -36.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds