Wall clock time and date at job start Tue Mar 31 2020 23:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 5 5 C 1.34699 * 116.99872 * 90.00103 * 4 2 1 6 6 O 1.21456 * 120.00138 * 359.97438 * 5 4 2 7 7 C 1.47889 * 119.99925 * 180.02562 * 5 4 2 8 8 N 1.34228 * 126.70410 * 0.02562 * 7 5 4 9 9 N 1.28982 * 107.24863 * 180.02562 * 8 7 5 10 10 N 1.28719 * 108.99952 * 0.02562 * 9 8 7 11 11 C 1.46501 * 125.31613 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46841 * 359.97438 * 11 10 9 13 13 C 1.52999 * 109.46589 * 119.97626 * 11 10 9 14 14 C 1.52995 * 109.47209 * 239.97972 * 11 10 9 15 15 N 1.28877 * 109.36818 * 359.72871 * 10 9 8 16 16 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 17 17 O 1.21285 * 120.00040 * 114.99997 * 16 2 1 18 18 N 1.34778 * 119.99902 * 295.00139 * 16 2 1 19 19 C 1.46493 * 120.00087 * 359.97438 * 18 16 2 20 20 C 1.46505 * 119.99823 * 179.97438 * 18 16 2 21 21 C 1.50697 * 109.46900 * 89.99912 * 20 18 16 22 22 H 1.07995 * 120.00161 * 0.02562 * 21 20 18 23 23 C 1.37880 * 120.00017 * 179.97438 * 21 20 18 24 24 N 1.31522 * 119.99535 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00201 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46882 * 90.00340 * 25 23 21 27 27 H 1.48495 * 109.47075 * 209.99813 * 25 23 21 28 28 H 1.48493 * 109.47218 * 330.00506 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.09000 * 109.47033 * 59.99738 * 12 11 10 33 33 H 1.09003 * 109.46702 * 179.97438 * 12 11 10 34 34 H 1.08998 * 109.47240 * 299.99616 * 12 11 10 35 35 H 1.09000 * 109.47388 * 60.00744 * 13 11 10 36 36 H 1.09003 * 109.46998 * 180.02562 * 13 11 10 37 37 H 1.09001 * 109.47397 * 299.99791 * 13 11 10 38 38 H 1.08998 * 109.47411 * 60.00054 * 14 11 10 39 39 H 1.09003 * 109.46939 * 180.02562 * 14 11 10 40 40 H 1.09009 * 109.47140 * 299.99817 * 14 11 10 41 41 H 1.09002 * 109.47115 * 89.99747 * 19 18 16 42 42 H 1.08998 * 109.47192 * 209.99907 * 19 18 16 43 43 H 1.08999 * 109.47064 * 329.99847 * 19 18 16 44 44 H 1.08997 * 109.46961 * 210.00478 * 20 18 16 45 45 H 1.09005 * 109.46984 * 329.99937 * 20 18 16 46 46 H 0.97003 * 119.99529 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2179 0.0668 -2.2850 6 8 1.9969 1.2607 -2.2542 7 6 2.7096 -0.5624 -3.5297 8 7 2.9944 -1.8611 -3.7139 9 7 3.3921 -1.9963 -4.9334 10 7 3.3680 -0.8467 -5.5119 11 6 3.7501 -0.5902 -6.9027 12 6 4.1835 -1.9009 -7.5624 13 6 2.5553 -0.0083 -7.6608 14 6 4.9106 0.4062 -6.9374 15 7 2.9501 0.0427 -4.6780 16 6 2.0324 -0.7104 1.2304 17 8 2.6531 -1.7467 1.1214 18 7 1.7920 -0.1942 2.4520 19 6 1.0427 1.0577 2.5836 20 6 2.2799 -0.8852 3.6481 21 6 3.6615 -0.3879 3.9870 22 1 4.1292 0.3676 3.3730 23 6 4.3282 -0.8966 5.0814 24 7 3.7584 -1.8162 5.8294 25 14 6.0405 -0.2797 5.5019 26 1 5.9361 0.8842 6.4184 27 1 6.8084 -1.3641 6.1647 28 1 6.7380 0.1315 4.2571 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 3.3568 -2.6109 -7.5377 33 1 4.4674 -1.7102 -8.5974 34 1 5.0347 -2.3154 -7.0223 35 1 2.2466 0.9255 -7.1908 36 1 2.8394 0.1821 -8.6958 37 1 1.7285 -0.7183 -7.6361 38 1 5.7617 -0.0084 -6.3973 39 1 5.1946 0.5973 -7.9723 40 1 4.6018 1.3400 -6.4673 41 1 -0.0214 0.8372 2.6678 42 1 1.3755 1.5882 3.4758 43 1 1.2166 1.6793 1.7053 44 1 1.6073 -0.6862 4.4824 45 1 2.3162 -1.9580 3.4586 46 1 4.2276 -2.1744 6.5991 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645939437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:42 Heat of formation + Delta-G solvation = -2.723761 kcal Electronic energy + Delta-G solvation = -29604.103152 eV Core-core repulsion = 25339.368006 eV Total energy + Delta-G solvation = -4264.735146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.79087 -42.08403 -40.59107 -38.73676 -37.94689 -36.72533 -34.93458 -34.87047 -33.92384 -32.95125 -29.63818 -28.72521 -28.54182 -27.73260 -27.30982 -25.92078 -25.78977 -24.29600 -22.63687 -21.91343 -20.52335 -19.69903 -18.78969 -18.70577 -18.44578 -17.97055 -17.52239 -17.29373 -17.08810 -16.46385 -15.98201 -15.42819 -15.28062 -15.26995 -14.90235 -14.84968 -14.40749 -14.18665 -14.09112 -13.75872 -13.54307 -13.50864 -13.38343 -13.33207 -13.24735 -13.08283 -12.85264 -12.84261 -12.70245 -12.66220 -12.52976 -12.47291 -12.34245 -12.25477 -12.22428 -12.15909 -12.09814 -11.72723 -11.62575 -10.66909 -10.64787 -9.52744 -8.24210 -6.38427 -0.51580 0.01418 0.25394 1.00832 1.35344 1.37150 1.38865 1.48598 1.59364 2.11126 2.38208 2.65980 2.84767 3.05812 3.33757 3.46081 3.47936 3.59158 3.61035 3.74112 3.76916 4.13387 4.32928 4.34884 4.46218 4.52605 4.54578 4.59148 4.60492 4.67261 4.71907 4.72619 4.80209 4.91337 4.99445 5.01184 5.09965 5.10462 5.11449 5.20837 5.21113 5.50569 5.77185 6.03069 6.07875 6.57309 6.70054 6.85278 7.18895 7.34921 8.83140 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.002383 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.732333 B =11746.811137 C =12586.195401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.078 3.922 3 H 0.128 0.872 4 O -0.320 6.320 5 C 0.576 3.424 6 O -0.480 6.480 7 C 0.125 3.875 8 N -0.257 5.257 9 N -0.055 5.055 10 N -0.101 5.101 11 C 0.156 3.844 12 C -0.152 4.152 13 C -0.157 4.157 14 C -0.160 4.160 15 N -0.233 5.233 16 C 0.499 3.501 17 O -0.577 6.577 18 N -0.597 5.597 19 C 0.066 3.934 20 C 0.260 3.740 21 C -0.546 4.546 22 H 0.052 0.948 23 C 0.009 3.991 24 N -0.925 5.925 25 Si 0.967 3.033 26 H -0.260 1.260 27 H -0.280 1.280 28 H -0.277 1.277 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.132 0.868 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.133 0.867 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.036 0.964 45 H 0.000 1.000 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 8.469 -30.520 32.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.021 3.979 3 H 0.145 0.855 4 O -0.234 6.234 5 C 0.415 3.585 6 O -0.364 6.364 7 C -0.155 4.155 8 N -0.131 5.131 9 N -0.047 5.047 10 N -0.018 5.018 11 C 0.079 3.921 12 C -0.210 4.210 13 C -0.215 4.215 14 C -0.218 4.218 15 N -0.090 5.090 16 C 0.286 3.714 17 O -0.456 6.456 18 N -0.329 5.329 19 C -0.076 4.076 20 C 0.139 3.861 21 C -0.585 4.585 22 H 0.070 0.930 23 C -0.190 4.190 24 N -0.565 5.565 25 Si 0.791 3.209 26 H -0.185 1.185 27 H -0.206 1.206 28 H -0.202 1.202 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.151 0.849 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.435 7.745 -30.700 31.971 hybrid contribution 0.819 0.195 1.262 1.517 sum -3.615 7.940 -29.438 30.704 Atomic orbital electron populations 1.22356 0.88426 1.04814 1.06488 1.22846 0.98431 0.97009 0.79642 0.85474 1.86710 1.76401 1.40915 1.19347 1.18549 0.74474 0.83747 0.81747 1.90866 1.47320 1.14529 1.83678 1.23559 1.08755 0.89262 0.93917 1.76391 1.13359 1.15832 1.07501 1.78935 1.15654 1.09353 1.00747 1.51530 1.35243 1.01261 1.13811 1.22394 0.99087 1.01176 0.69487 1.22216 1.03035 0.92674 1.03112 1.22336 0.94946 1.01582 1.02671 1.22351 0.94928 0.97567 1.06932 1.74929 1.14694 1.20438 0.98939 1.20527 0.80291 0.85461 0.85124 1.90702 1.42140 1.26099 1.86677 1.48033 1.54087 1.25421 1.05393 1.22246 0.96611 0.84389 1.04315 1.18862 0.93908 0.91798 0.81499 1.21687 1.02242 1.23106 1.11421 0.93005 1.25834 1.02330 0.94948 0.95920 1.70044 1.39855 1.28915 1.17686 0.85430 0.78828 0.78401 0.78242 1.18511 1.20562 1.20159 0.86523 0.91236 0.88903 0.91033 0.85063 0.91420 0.91329 0.84976 0.91750 0.92199 0.84888 0.91401 0.89463 0.90524 0.89189 0.94572 0.98141 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.28 71.98 0.67 -3.27 16 2 C 0.08 2.62 2.17 29.85 0.06 2.69 16 3 H 0.13 3.80 6.15 -2.39 -0.01 3.78 16 4 O -0.32 -12.00 9.43 -49.71 -0.47 -12.46 16 5 C 0.58 19.41 7.95 70.38 0.56 19.97 16 6 O -0.48 -15.88 16.36 19.98 0.33 -15.55 16 7 C 0.13 4.01 8.18 137.09 1.12 5.13 16 8 N -0.26 -8.58 12.54 -52.41 -0.66 -9.23 16 9 N -0.05 -1.46 12.21 37.02 0.45 -1.01 16 10 N -0.10 -2.16 3.72 -152.26 -0.57 -2.73 16 11 C 0.16 1.61 1.30 3.60 0.00 1.61 16 12 C -0.15 -0.96 7.90 71.98 0.57 -0.40 16 13 C -0.16 -0.98 8.66 71.98 0.62 -0.35 16 14 C -0.16 -1.19 8.66 71.98 0.62 -0.57 16 15 N -0.23 -6.18 11.85 -52.36 -0.62 -6.80 16 16 C 0.50 22.33 7.10 87.66 0.62 22.95 16 17 O -0.58 -32.56 16.09 15.70 0.25 -32.31 16 18 N -0.60 -25.64 2.86 -851.14 -2.43 -28.07 16 19 C 0.07 1.89 8.92 127.77 1.14 3.03 16 20 C 0.26 14.12 5.16 85.63 0.44 14.56 16 21 C -0.55 -31.95 9.39 25.60 0.24 -31.71 16 22 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 23 C 0.01 0.52 5.46 84.65 0.46 0.99 16 24 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 25 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 26 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 28 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 29 H 0.12 2.21 5.12 -2.39 -0.01 2.20 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.13 -0.18 8.14 -2.39 -0.02 -0.19 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.07 0.70 8.14 -2.38 -0.02 0.69 16 41 H 0.09 1.91 7.02 -2.39 -0.02 1.90 16 42 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 43 H 0.09 2.03 6.08 -2.39 -0.01 2.02 16 44 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 45 H 0.00 0.03 7.42 -2.38 -0.02 0.01 16 46 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -85.73 392.94 6.74 -79.00 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.00 Total: 2.86 kcal Atomic # 6 Polarization: 27.50 SS G_CDS: 7.14 Total: 34.64 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -3.54 Total: -103.92 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: 0.11 Total: -60.32 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -85.73 6.74 -79.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645939437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.272 kcal (2) G-P(sol) polarization free energy of solvation -85.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds