Wall clock time and date at job start Tue Mar 31 2020 22:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47395 * 89.99619 * 9 7 5 11 11 H 1.48493 * 109.46907 * 209.99948 * 9 7 5 12 12 H 1.48506 * 109.46912 * 329.99546 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 C 1.53042 * 109.46398 * 180.02562 * 13 2 1 15 15 C 1.53198 * 109.31465 * 178.60163 * 14 13 2 16 16 N 1.46935 * 108.76062 * 54.65546 * 15 14 13 17 17 C 1.34781 * 120.62616 * 126.40982 * 16 15 14 18 18 O 1.21277 * 119.99539 * 179.97438 * 17 16 15 19 19 C 1.50704 * 119.99936 * 359.97292 * 17 16 15 20 20 N 1.46506 * 109.46499 * 180.02562 * 19 17 16 21 21 C 1.36372 * 125.96211 * 269.68449 * 20 19 17 22 22 O 1.35623 * 125.98679 * 0.04377 * 21 20 19 23 23 N 1.30903 * 108.02222 * 179.88937 * 21 20 19 24 24 N 1.40116 * 107.94020 * 0.37711 * 23 21 20 25 25 C 1.30910 * 107.93861 * 359.76259 * 24 23 21 26 26 O 1.35630 * 125.98581 * 179.97438 * 25 24 23 27 27 C 1.46925 * 118.74051 * 306.37966 * 16 15 14 28 28 C 1.53049 * 109.46109 * 59.97287 * 13 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46383 * 300.00050 * 13 2 1 35 35 H 1.08999 * 109.49617 * 298.56655 * 14 13 2 36 36 H 1.08997 * 109.50004 * 58.66098 * 14 13 2 37 37 H 1.08993 * 109.59764 * 294.87180 * 15 14 13 38 38 H 1.08991 * 109.70129 * 174.50330 * 15 14 13 39 39 H 1.08994 * 109.46980 * 299.99995 * 19 17 16 40 40 H 1.08997 * 109.47172 * 60.00641 * 19 17 16 41 41 H 0.96701 * 114.00147 * 90.00220 * 22 21 20 42 42 H 0.96705 * 113.99962 * 270.01837 * 26 25 24 43 43 H 1.08995 * 109.58787 * 293.82564 * 27 16 15 44 44 H 1.08995 * 109.70361 * 173.46863 * 27 16 15 45 45 H 1.08997 * 109.49255 * 301.34180 * 28 13 2 46 46 H 1.09004 * 109.49634 * 61.43521 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.5210 0.1787 5.8861 11 1 3.8932 -0.3235 5.9147 12 1 3.0941 1.6951 4.8343 13 6 2.0400 -0.7212 -1.2491 14 6 3.5705 -0.7217 -1.2485 15 6 4.0774 -1.4749 -2.4825 16 7 3.4748 -0.8769 -3.6818 17 6 4.2484 -0.4582 -4.7030 18 8 3.7388 0.0332 -5.6877 19 6 5.7464 -0.6008 -4.6211 20 7 6.3545 -0.0754 -5.8461 21 6 6.6226 -0.7891 -6.9768 22 8 6.3724 -2.1088 -7.1644 23 7 7.1608 0.0235 -7.8506 24 7 7.2489 1.2924 -7.2628 25 6 6.7567 1.2111 -6.0525 26 8 6.6636 2.2282 -5.1601 27 6 2.0129 -0.7448 -3.7469 28 6 1.5292 0.0000 -2.4987 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.2468 -2.3964 4.2425 34 1 1.6767 -1.7489 -1.2490 35 1 3.9345 0.3054 -1.2740 36 1 3.9338 -1.2146 -0.3469 37 1 3.7905 -2.5241 -2.4138 38 1 5.1629 -1.3959 -2.5409 39 1 6.1182 -0.0415 -3.7626 40 1 6.0056 -1.6535 -4.5090 41 1 5.4980 -2.2948 -7.5331 42 1 7.4383 2.3225 -4.5890 43 1 1.5577 -1.7345 -3.7813 44 1 1.7341 -0.1832 -4.6384 45 1 0.4395 0.0206 -2.4868 46 1 1.9128 1.0202 -2.5122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664468538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:32 Heat of formation + Delta-G solvation = -5.780828 kcal Electronic energy + Delta-G solvation = -30196.886496 eV Core-core repulsion = 25932.018786 eV Total energy + Delta-G solvation = -4264.867710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.63124 -40.45598 -38.50777 -38.19192 -37.41219 -35.64140 -34.70973 -33.09118 -31.41751 -30.94653 -29.87920 -28.87810 -27.94522 -25.47520 -23.92369 -23.10212 -23.03364 -22.39283 -21.46812 -20.01676 -19.57383 -19.20338 -18.76061 -17.97918 -17.16880 -17.10027 -16.58326 -15.95355 -15.78158 -15.59006 -15.02207 -14.43435 -14.17643 -14.05836 -13.97132 -13.85199 -13.54959 -13.26385 -13.14191 -12.77056 -12.70115 -12.69496 -12.47546 -12.20318 -11.75705 -11.70442 -11.33521 -11.13227 -10.95227 -10.94757 -10.86624 -10.82350 -10.43651 -10.38135 -10.29333 -9.98067 -9.85949 -9.72502 -9.68276 -9.01070 -8.88200 -7.04475 -5.85935 -3.14013 1.11864 1.39977 1.91835 2.09537 2.59665 2.92133 3.36330 3.40651 3.42512 3.43298 3.90209 3.99924 4.42806 4.49814 4.62314 4.85894 4.86811 4.88323 4.90566 5.00877 5.18766 5.27174 5.32602 5.41831 5.51012 5.59366 5.70583 5.75888 5.77783 5.84136 5.97632 6.05627 6.18224 6.20432 6.34713 6.38608 6.52952 6.63215 6.67993 6.83150 6.93123 7.01539 7.03864 7.57562 7.62410 7.68117 8.33139 9.44627 10.01680 10.36448 11.36655 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.002473 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.665149 B =11317.559556 C =11891.997966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.723 5.723 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.090 4.090 14 C -0.124 4.124 15 C 0.101 3.899 16 N -0.599 5.599 17 C 0.500 3.500 18 O -0.534 6.534 19 C 0.082 3.918 20 N -0.497 5.497 21 C 0.415 3.585 22 O -0.438 6.438 23 N -0.294 5.294 24 N -0.296 5.296 25 C 0.419 3.581 26 O -0.432 6.432 27 C 0.113 3.887 28 C -0.129 4.129 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.414 0.586 42 H 0.412 0.588 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 -0.609 -16.453 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.364 5.364 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.109 4.109 14 C -0.162 4.162 15 C -0.021 4.021 16 N -0.332 5.332 17 C 0.285 3.715 18 O -0.411 6.411 19 C -0.046 4.046 20 N -0.217 5.217 21 C 0.105 3.895 22 O -0.238 6.238 23 N -0.138 5.138 24 N -0.140 5.140 25 C 0.109 3.891 26 O -0.232 6.232 27 C -0.009 4.009 28 C -0.167 4.167 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.216 0.784 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.273 0.727 42 H 0.270 0.730 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.231 0.354 -18.160 18.901 hybrid contribution -0.696 -0.507 2.649 2.785 sum 4.535 -0.153 -15.511 16.161 Atomic orbital electron populations 1.22502 0.99481 1.00789 0.99934 1.20204 0.91656 0.95317 0.85997 0.93700 1.42410 1.78125 1.10595 1.05288 1.19214 1.36306 0.93805 0.87380 0.91348 1.24702 1.02282 0.95951 0.97952 1.69643 1.51106 1.08615 1.28874 0.86238 0.77323 0.78821 0.84092 1.21784 1.21814 1.20819 1.21384 0.94743 1.00049 0.94748 1.21908 0.96334 1.00974 0.96958 1.22021 0.97533 0.98047 0.84540 1.48166 1.07590 1.60175 1.17283 1.20509 0.88716 0.78768 0.83490 1.90765 1.74634 1.44148 1.31523 1.21818 0.92221 1.03746 0.86803 1.46643 1.50610 1.09317 1.15156 1.21256 0.98682 0.85405 0.84125 1.84893 1.41040 1.13086 1.84791 1.78354 1.21231 0.94972 1.19267 1.78369 1.21045 1.11100 1.03526 1.21274 0.97436 0.79206 0.91188 1.85024 1.45702 1.43335 1.49162 1.21699 0.78203 1.01103 0.99880 1.22029 1.01434 0.99656 0.93592 0.93569 0.94299 0.92961 0.78368 0.93545 0.91252 0.91777 0.88575 0.90470 0.90349 0.85390 0.85149 0.72688 0.72982 0.91208 0.89264 0.90127 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.14 37.16 0.34 -2.39 16 2 C 0.18 3.08 2.47 -67.94 -0.17 2.91 16 3 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 4 N -0.72 -16.10 4.41 -53.43 -0.24 -16.33 16 5 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 6 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -26.40 13.06 55.49 0.72 -25.68 16 9 Si 0.90 21.36 29.55 -169.99 -5.02 16.33 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 C -0.09 -1.18 1.79 -90.58 -0.16 -1.34 16 14 C -0.12 -1.50 5.22 -26.61 -0.14 -1.64 16 15 C 0.10 0.87 6.34 -3.70 -0.02 0.84 16 16 N -0.60 -5.79 2.97 -172.77 -0.51 -6.30 16 17 C 0.50 5.23 7.77 -10.98 -0.09 5.15 16 18 O -0.53 -7.72 15.85 5.56 0.09 -7.64 16 19 C 0.08 0.60 4.84 -5.19 -0.03 0.57 16 20 N -0.50 -4.98 2.25 -121.35 -0.27 -5.25 16 21 C 0.42 4.57 9.15 -88.81 -0.81 3.76 16 22 O -0.44 -3.46 13.57 -18.57 -0.25 -3.71 16 23 N -0.29 -4.08 12.72 29.65 0.38 -3.70 16 24 N -0.30 -4.15 12.72 29.65 0.38 -3.77 16 25 C 0.42 4.75 9.15 -88.81 -0.81 3.94 16 26 O -0.43 -3.76 13.58 -18.59 -0.25 -4.01 16 27 C 0.11 1.16 6.43 -3.71 -0.02 1.13 16 28 C -0.13 -1.44 5.04 -26.61 -0.13 -1.57 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.52 6.40 -51.93 -0.33 0.19 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.38 9.03 7.58 -40.82 -0.31 8.73 16 33 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.42 7.41 -51.93 -0.38 1.04 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16 39 H 0.13 0.65 7.69 -51.93 -0.40 0.25 16 40 H 0.13 0.64 7.94 -51.93 -0.41 0.22 16 41 H 0.41 1.60 9.06 45.56 0.41 2.01 16 42 H 0.41 1.09 9.06 45.56 0.41 1.50 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.01 7.01 -51.93 -0.36 0.65 16 45 H 0.08 0.85 6.36 -51.93 -0.33 0.52 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -36.07 380.43 -6.48 -42.55 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -4.94 Total: 7.08 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.29 Total: 4.70 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.46 Total: -61.04 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.42 Total: -15.36 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.07 -6.48 -42.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664468538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.769 kcal (2) G-P(sol) polarization free energy of solvation -36.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds