Wall clock time and date at job start Tue Mar 31 2020 22:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47395 * 89.99619 * 9 7 5 11 11 H 1.48493 * 109.46907 * 209.99948 * 9 7 5 12 12 H 1.48506 * 109.46912 * 329.99546 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 C 1.53042 * 109.46398 * 180.02562 * 13 2 1 15 15 C 1.53198 * 109.31465 * 178.60163 * 14 13 2 16 16 N 1.46935 * 108.76062 * 54.65546 * 15 14 13 17 17 C 1.34781 * 120.62616 * 126.40982 * 16 15 14 18 18 O 1.21277 * 119.99539 * 179.97438 * 17 16 15 19 19 C 1.50704 * 119.99936 * 359.97292 * 17 16 15 20 20 N 1.46506 * 109.46499 * 180.02562 * 19 17 16 21 21 C 1.36372 * 125.96211 * 269.68449 * 20 19 17 22 22 O 1.35623 * 125.98679 * 0.04377 * 21 20 19 23 23 N 1.30903 * 108.02222 * 179.88937 * 21 20 19 24 24 N 1.40116 * 107.94020 * 0.37711 * 23 21 20 25 25 C 1.30910 * 107.93861 * 359.76259 * 24 23 21 26 26 O 1.35630 * 125.98581 * 179.97438 * 25 24 23 27 27 C 1.46925 * 118.74051 * 306.37966 * 16 15 14 28 28 C 1.53049 * 109.46109 * 59.97287 * 13 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46383 * 300.00050 * 13 2 1 35 35 H 1.08999 * 109.49617 * 298.56655 * 14 13 2 36 36 H 1.08997 * 109.50004 * 58.66098 * 14 13 2 37 37 H 1.08993 * 109.59764 * 294.87180 * 15 14 13 38 38 H 1.08991 * 109.70129 * 174.50330 * 15 14 13 39 39 H 1.08994 * 109.46980 * 299.99995 * 19 17 16 40 40 H 1.08997 * 109.47172 * 60.00641 * 19 17 16 41 41 H 0.96701 * 114.00147 * 90.00220 * 22 21 20 42 42 H 0.96705 * 113.99962 * 270.01837 * 26 25 24 43 43 H 1.08995 * 109.58787 * 293.82564 * 27 16 15 44 44 H 1.08995 * 109.70361 * 173.46863 * 27 16 15 45 45 H 1.08997 * 109.49255 * 301.34180 * 28 13 2 46 46 H 1.09004 * 109.49634 * 61.43521 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.5210 0.1787 5.8861 11 1 3.8932 -0.3235 5.9147 12 1 3.0941 1.6951 4.8343 13 6 2.0400 -0.7212 -1.2491 14 6 3.5705 -0.7217 -1.2485 15 6 4.0774 -1.4749 -2.4825 16 7 3.4748 -0.8769 -3.6818 17 6 4.2484 -0.4582 -4.7030 18 8 3.7388 0.0332 -5.6877 19 6 5.7464 -0.6008 -4.6211 20 7 6.3545 -0.0754 -5.8461 21 6 6.6226 -0.7891 -6.9768 22 8 6.3724 -2.1088 -7.1644 23 7 7.1608 0.0235 -7.8506 24 7 7.2489 1.2924 -7.2628 25 6 6.7567 1.2111 -6.0525 26 8 6.6636 2.2282 -5.1601 27 6 2.0129 -0.7448 -3.7469 28 6 1.5292 0.0000 -2.4987 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.2468 -2.3964 4.2425 34 1 1.6767 -1.7489 -1.2490 35 1 3.9345 0.3054 -1.2740 36 1 3.9338 -1.2146 -0.3469 37 1 3.7905 -2.5241 -2.4138 38 1 5.1629 -1.3959 -2.5409 39 1 6.1182 -0.0415 -3.7626 40 1 6.0056 -1.6535 -4.5090 41 1 5.4980 -2.2948 -7.5331 42 1 7.4383 2.3225 -4.5890 43 1 1.5577 -1.7345 -3.7813 44 1 1.7341 -0.1832 -4.6384 45 1 0.4395 0.0206 -2.4868 46 1 1.9128 1.0202 -2.5122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664468538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:31 Heat of formation + Delta-G solvation = -38.121086 kcal Electronic energy + Delta-G solvation = -30198.288875 eV Core-core repulsion = 25932.018786 eV Total energy + Delta-G solvation = -4266.270089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.41245 -41.30517 -39.26004 -39.17171 -38.07872 -36.93380 -35.48210 -34.64380 -32.61965 -32.08537 -30.71505 -30.23457 -28.93549 -26.62192 -25.49079 -24.03151 -23.89420 -23.19972 -22.49687 -21.21457 -20.52633 -19.89865 -19.50122 -19.15027 -18.57621 -17.86120 -17.38053 -16.82276 -16.70923 -16.47128 -16.31234 -15.66927 -15.48555 -15.19148 -14.96611 -14.87855 -14.45311 -14.21927 -14.10614 -13.91720 -13.68929 -13.46032 -13.40643 -13.37337 -12.99435 -12.85693 -12.77216 -12.56746 -12.29742 -12.17403 -12.10797 -11.82814 -11.81093 -11.62680 -11.47502 -11.33010 -11.19451 -10.89643 -10.69801 -10.56857 -9.74791 -8.93015 -7.90209 -5.15572 0.37683 0.69375 1.10648 1.33575 1.48357 1.49895 1.56845 1.85334 2.19030 2.58740 2.79076 3.20353 3.41720 3.43951 3.77502 3.82013 3.88250 3.97885 4.11529 4.14516 4.22057 4.24830 4.40036 4.45491 4.56311 4.60009 4.64101 4.79214 4.79429 4.88144 4.93481 5.05612 5.07442 5.15394 5.18934 5.27163 5.36265 5.48859 5.53651 5.62508 5.69691 6.18054 6.23018 6.33384 6.40698 6.75824 6.90827 7.40438 8.18216 8.41547 9.32776 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.002473 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.665149 B =11317.559556 C =11891.997966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.173 3.827 3 H 0.033 0.967 4 N -0.729 5.729 5 C -0.230 4.230 6 H 0.067 0.933 7 C -0.071 4.071 8 N -0.965 5.965 9 Si 0.960 3.040 10 H -0.294 1.294 11 H -0.297 1.297 12 H -0.273 1.273 13 C -0.080 4.080 14 C -0.120 4.120 15 C 0.108 3.892 16 N -0.595 5.595 17 C 0.500 3.500 18 O -0.578 6.578 19 C 0.081 3.919 20 N -0.494 5.494 21 C 0.425 3.575 22 O -0.432 6.432 23 N -0.337 5.337 24 N -0.340 5.340 25 C 0.426 3.574 26 O -0.437 6.437 27 C 0.115 3.885 28 C -0.118 4.118 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.375 0.625 33 H 0.249 0.751 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.432 0.568 42 H 0.437 0.563 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.988 -0.978 -16.702 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.064 3.936 3 H 0.051 0.949 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.085 0.915 7 C -0.263 4.263 8 N -0.616 5.616 9 Si 0.790 3.210 10 H -0.221 1.221 11 H -0.223 1.223 12 H -0.198 1.198 13 C -0.100 4.100 14 C -0.158 4.158 15 C -0.014 4.014 16 N -0.327 5.327 17 C 0.287 3.713 18 O -0.458 6.458 19 C -0.045 4.045 20 N -0.214 5.214 21 C 0.114 3.886 22 O -0.235 6.235 23 N -0.181 5.181 24 N -0.184 5.184 25 C 0.115 3.885 26 O -0.241 6.241 27 C -0.007 4.007 28 C -0.157 4.157 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.207 0.793 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.294 0.706 42 H 0.300 0.700 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.384 0.005 -18.407 19.179 hybrid contribution -0.841 -0.356 2.737 2.885 sum 4.544 -0.352 -15.671 16.320 Atomic orbital electron populations 1.22385 0.98434 1.00781 1.00347 1.20428 0.92251 0.94769 0.86113 0.94881 1.42541 1.78244 1.10275 1.05919 1.19502 1.34276 0.93834 0.88572 0.91492 1.25341 1.03465 0.96776 1.00728 1.69768 1.52906 1.09814 1.29126 0.85340 0.76676 0.78159 0.80801 1.22131 1.22324 1.19832 1.21253 0.95628 0.99659 0.93437 1.21787 0.95445 1.00803 0.97761 1.22053 0.99376 0.97826 0.82128 1.48188 1.07373 1.59751 1.17404 1.20987 0.89930 0.77618 0.82723 1.90760 1.75683 1.46116 1.33225 1.22142 0.89705 1.06141 0.86509 1.46671 1.50324 1.08734 1.15674 1.21303 0.97391 0.86003 0.83943 1.84877 1.42577 1.11199 1.84886 1.78231 1.23371 0.95585 1.20881 1.78245 1.23278 1.11761 1.05103 1.21318 0.96184 0.79944 0.91015 1.84989 1.47453 1.42544 1.49121 1.21638 0.78875 1.01597 0.98571 1.21919 1.01888 0.98922 0.92937 0.93739 0.91059 0.95367 0.79294 0.94207 0.91092 0.92516 0.91323 0.89145 0.86952 0.82557 0.81880 0.70559 0.70020 0.89642 0.90266 0.89291 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 9.14 71.98 0.66 -4.37 16 2 C 0.17 5.84 2.47 44.99 0.11 5.95 16 3 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 4 N -0.73 -32.47 4.41 -322.95 -1.42 -33.90 16 5 C -0.23 -11.81 9.93 84.03 0.83 -10.98 16 6 H 0.07 3.40 7.83 -2.91 -0.02 3.38 16 7 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 8 N -0.96 -55.09 13.06 21.65 0.28 -54.81 16 9 Si 0.96 44.04 29.55 68.60 2.03 46.06 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 C -0.08 -1.98 1.79 -10.77 -0.02 -2.00 16 14 C -0.12 -2.69 5.22 30.67 0.16 -2.53 16 15 C 0.11 1.47 6.34 86.36 0.55 2.01 16 16 N -0.59 -9.64 2.97 -818.91 -2.43 -12.07 16 17 C 0.50 9.02 7.77 87.66 0.68 9.71 16 18 O -0.58 -15.76 15.85 -3.02 -0.05 -15.81 16 19 C 0.08 0.88 4.84 85.63 0.41 1.29 16 20 N -0.49 -8.79 2.25 -759.27 -1.71 -10.50 16 21 C 0.42 8.71 9.15 179.72 1.65 10.36 16 22 O -0.43 -5.86 13.57 -89.35 -1.21 -7.07 16 23 N -0.34 -9.28 12.72 -173.67 -2.21 -11.48 16 24 N -0.34 -9.49 12.72 -173.66 -2.21 -11.70 16 25 C 0.43 9.12 9.15 179.72 1.65 10.76 16 26 O -0.44 -6.79 13.58 -89.42 -1.21 -8.01 16 27 C 0.12 2.07 6.43 86.36 0.56 2.62 16 28 C -0.12 -2.38 5.04 30.67 0.15 -2.22 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.77 6.40 -2.39 -0.02 1.75 16 31 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.37 17.79 7.58 -92.70 -0.70 17.09 16 33 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.97 7.41 -2.39 -0.02 1.95 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 0.80 5.93 -2.39 -0.01 0.79 16 39 H 0.16 0.85 7.69 -2.39 -0.02 0.83 16 40 H 0.16 0.75 7.94 -2.39 -0.02 0.73 16 41 H 0.43 2.37 9.06 -74.06 -0.67 1.70 16 42 H 0.44 1.29 9.06 -74.05 -0.67 0.62 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 1.65 7.01 -2.39 -0.02 1.63 16 45 H 0.09 1.64 6.36 -2.39 -0.02 1.63 16 46 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -80.30 380.43 -3.28 -83.58 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -0.99 Total: 18.44 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 7.85 Total: 17.26 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -9.70 Total: -134.46 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -2.47 Total: -30.89 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -80.30 -3.28 -83.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664468538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.457 kcal (2) G-P(sol) polarization free energy of solvation -80.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds