Wall clock time and date at job start Tue Mar 31 2020 23:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46469 * 2 1 4 4 C 1.52993 * 109.47130 * 119.99699 * 2 1 3 5 5 N 1.46497 * 109.47498 * 295.00219 * 4 2 1 6 6 C 1.36937 * 120.00345 * 180.02562 * 5 4 2 7 7 H 1.07993 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.38819 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99917 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00009 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47361 * 59.99626 * 10 8 6 12 12 H 1.48500 * 109.47342 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47063 * 299.99865 * 10 8 6 14 14 C 1.53002 * 109.46881 * 239.99964 * 2 1 3 15 15 N 1.46504 * 109.47287 * 64.99613 * 14 2 1 16 16 C 1.34767 * 119.99917 * 179.97438 * 15 14 2 17 17 O 1.21570 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.47705 * 119.99948 * 180.02562 * 16 15 14 19 19 C 1.40195 * 120.46166 * 180.02562 * 18 16 15 20 20 C 1.38041 * 118.38791 * 180.02562 * 19 18 16 21 21 C 1.39509 * 119.21273 * 359.97438 * 20 19 18 22 22 C 1.48226 * 119.57207 * 179.97438 * 21 20 19 23 23 C 1.39424 * 120.13057 * 180.02562 * 22 21 20 24 24 C 1.37995 * 119.86731 * 179.97438 * 23 22 21 25 25 C 1.38338 * 120.12963 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.26308 * 359.97438 * 25 24 23 27 27 C 1.37988 * 120.13062 * 0.02562 * 26 25 24 28 28 N 1.32771 * 120.85905 * 0.26516 * 21 20 19 29 29 C 1.31522 * 121.76828 * 359.46514 * 28 21 20 30 30 H 1.08996 * 109.47448 * 60.00116 * 1 2 3 31 31 H 1.09004 * 109.47136 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47079 * 300.00209 * 1 2 3 33 33 H 1.09003 * 109.47109 * 54.99820 * 4 2 1 34 34 H 1.09000 * 109.46973 * 175.00170 * 4 2 1 35 35 H 0.97005 * 119.99955 * 0.02562 * 5 4 2 36 36 H 0.96993 * 119.99638 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.46793 * 304.99877 * 14 2 1 38 38 H 1.08999 * 109.46495 * 184.99756 * 14 2 1 39 39 H 0.97001 * 119.99756 * 0.02562 * 15 14 2 40 40 H 1.08002 * 120.80632 * 359.97438 * 19 18 16 41 41 H 1.07995 * 120.39635 * 180.02562 * 20 19 18 42 42 H 1.07996 * 120.06773 * 0.02562 * 23 22 21 43 43 H 1.08008 * 119.93430 * 179.72605 * 24 23 22 44 44 H 1.08010 * 119.86629 * 180.02562 * 25 24 23 45 45 H 1.08001 * 119.93254 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.06632 * 180.02562 * 27 26 25 47 47 H 1.07994 * 119.65259 * 180.29614 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 0.0354 2.4423 6 6 2.0020 -0.4202 3.6855 7 1 2.5630 -1.3374 3.7864 8 6 1.6352 0.2971 4.8161 9 7 0.9519 1.4153 4.6930 10 14 2.1113 -0.3247 6.5119 11 1 3.5904 -0.4153 6.6087 12 1 1.6048 0.6151 7.5440 13 1 1.5178 -1.6682 6.7311 14 6 2.0400 -0.7213 -1.2493 15 7 1.6523 0.0353 -2.4425 16 6 1.9963 -0.4132 -3.6659 17 8 2.6278 -1.4458 -3.7795 18 6 1.6059 0.3499 -4.8688 19 6 1.9581 -0.1080 -6.1462 20 6 1.5717 0.6390 -7.2408 21 6 0.8487 1.8154 -7.0414 22 6 0.4302 2.6240 -8.2111 23 6 -0.2923 3.8018 -8.0252 24 6 -0.6787 4.5507 -9.1180 25 6 -0.3510 4.1345 -10.3960 26 6 0.3656 2.9668 -10.5866 27 6 0.7575 2.2096 -9.5016 28 7 0.5355 2.2230 -5.8173 29 6 0.8807 1.5371 -4.7495 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7197 1.2952 34 1 3.1263 -0.7993 1.2056 35 1 1.1482 0.8591 2.3518 36 1 0.6953 1.9162 5.4830 37 1 1.6053 -1.7198 -1.2951 38 1 3.1263 -0.7994 -1.2056 39 1 1.1487 0.8594 -2.3518 40 1 2.5189 -1.0226 -6.2709 41 1 1.8253 0.3163 -8.2398 42 1 -0.5483 4.1279 -7.0280 43 1 -1.2422 5.4610 -8.9755 44 1 -0.6553 4.7242 -11.2482 45 1 0.6189 2.6471 -11.5866 46 1 1.3173 1.2983 -9.6516 47 1 0.6039 1.8980 -3.7701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666641581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:23 Heat of formation + Delta-G solvation = 29.221302 kcal Electronic energy + Delta-G solvation = -26863.997470 eV Core-core repulsion = 23011.496829 eV Total energy + Delta-G solvation = -3852.500641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.07579 -39.74255 -38.80189 -36.87373 -34.51323 -33.47752 -32.99873 -32.44160 -31.31381 -30.34486 -29.66271 -26.70132 -25.67441 -24.71943 -24.28941 -22.64603 -22.42117 -21.85707 -20.77615 -20.00925 -18.46607 -17.69669 -17.09000 -16.92541 -16.54353 -15.79972 -15.58064 -15.16722 -14.99126 -14.77643 -14.70954 -14.52704 -14.14892 -13.92985 -13.79390 -13.63270 -13.43161 -13.09561 -13.01636 -12.75936 -12.64378 -12.33661 -12.07444 -11.74548 -11.53600 -11.08076 -10.92150 -10.73818 -10.61911 -10.49711 -10.39792 -10.35420 -10.18374 -10.05828 -9.79547 -9.67077 -9.39630 -9.16881 -8.87702 -8.69527 -6.92991 -5.77365 -3.05844 -0.15517 0.80931 0.96495 1.13142 2.63227 2.97284 3.28506 3.44544 3.48864 3.49874 3.56164 3.67070 4.09146 4.37272 4.40398 4.48316 4.55778 4.56696 4.59147 4.69652 4.84506 4.99059 5.00629 5.13676 5.13752 5.18109 5.34951 5.39146 5.53124 5.57219 5.64422 5.65766 5.77468 5.92290 5.93445 5.94554 6.04293 6.07540 6.08447 6.16028 6.20455 6.35008 6.40593 6.49391 6.63422 6.75197 6.84516 7.32373 7.41347 7.69751 8.01236 8.41731 9.52992 10.10065 10.44825 11.45507 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024240 B = 0.001602 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.848929 B =17475.064557 C =18471.102999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.730 5.730 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.717 5.717 16 C 0.560 3.440 17 O -0.536 6.536 18 C -0.187 4.187 19 C -0.012 4.012 20 C -0.171 4.171 21 C 0.188 3.812 22 C -0.057 4.057 23 C -0.075 4.075 24 C -0.127 4.127 25 C -0.106 4.106 26 C -0.125 4.125 27 C -0.097 4.097 28 N -0.480 5.480 29 C 0.144 3.856 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.021 0.979 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.400 0.600 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.643 4.000 -33.326 33.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.369 5.369 16 C 0.346 3.654 17 O -0.414 6.414 18 C -0.192 4.192 19 C -0.038 4.038 20 C -0.191 4.191 21 C 0.053 3.947 22 C -0.058 4.058 23 C -0.094 4.094 24 C -0.145 4.145 25 C -0.125 4.125 26 C -0.143 4.143 27 C -0.116 4.116 28 N -0.188 5.188 29 C -0.016 4.016 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.169 0.831 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.583 3.919 -33.109 33.440 hybrid contribution 0.302 -0.388 0.981 1.097 sum -2.281 3.531 -32.128 32.401 Atomic orbital electron populations 1.21805 0.94598 1.02034 1.01539 1.21570 0.96770 1.00572 0.94143 0.90422 1.20568 0.96636 0.94215 0.85332 1.42321 1.66920 1.27709 1.00551 1.19197 1.28827 1.05474 0.83677 0.91198 1.24732 1.00978 0.97379 0.97849 1.69643 1.43484 1.16543 1.28619 0.86254 0.78023 0.77704 0.84122 1.21270 1.21695 1.21265 1.21487 1.00374 0.95303 0.82543 1.45990 1.57207 1.27824 1.05841 1.17953 0.79666 0.84811 0.82947 1.90792 1.40000 1.24026 1.86608 1.21096 1.04473 0.98600 0.95072 1.21678 0.93344 0.98449 0.90372 1.22065 1.00745 0.95905 1.00383 1.19971 0.92262 0.91483 0.90970 1.18520 1.00742 0.95633 0.90875 1.21405 0.95039 0.92996 0.99924 1.21210 1.00563 1.00239 0.92469 1.21338 0.97421 0.96355 0.97363 1.21078 0.99116 0.95381 0.98769 1.21270 0.99140 0.99785 0.91428 1.67622 1.20556 1.32533 0.98094 1.22961 0.91440 0.89604 0.97592 0.93953 0.92734 0.91032 0.95965 0.96093 0.78198 0.93479 0.91013 0.91018 0.76453 0.83149 0.83799 0.84488 0.85524 0.85797 0.85548 0.85417 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.16 0.33 -1.71 16 2 C -0.11 -1.66 2.46 -90.62 -0.22 -1.88 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.16 3.13 5.65 -4.05 -0.02 3.11 16 5 N -0.73 -18.11 5.33 -59.91 -0.32 -18.42 16 6 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 10 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.13 1.68 5.06 -4.04 -0.02 1.66 16 15 N -0.72 -8.14 5.24 -61.29 -0.32 -8.46 16 16 C 0.56 7.06 7.77 -12.40 -0.10 6.96 16 17 O -0.54 -8.56 16.41 5.30 0.09 -8.48 16 18 C -0.19 -1.96 5.89 -104.78 -0.62 -2.57 16 19 C -0.01 -0.12 9.70 -38.92 -0.38 -0.49 16 20 C -0.17 -1.37 9.44 -39.18 -0.37 -1.74 16 21 C 0.19 1.77 6.73 -82.88 -0.56 1.21 16 22 C -0.06 -0.48 5.88 -104.91 -0.62 -1.09 16 23 C -0.08 -0.61 9.57 -39.23 -0.38 -0.98 16 24 C -0.13 -0.82 10.03 -39.63 -0.40 -1.22 16 25 C -0.11 -0.60 10.04 -39.51 -0.40 -1.00 16 26 C -0.13 -0.70 10.03 -39.64 -0.40 -1.10 16 27 C -0.10 -0.63 9.42 -39.23 -0.37 -1.00 16 28 N -0.48 -4.93 9.40 -9.45 -0.09 -5.02 16 29 C 0.14 1.36 10.70 -17.16 -0.18 1.18 16 30 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.38 9.89 6.85 -40.82 -0.28 9.61 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.40 3.61 5.71 -40.82 -0.23 3.38 16 40 H 0.15 1.29 7.73 -52.49 -0.41 0.89 16 41 H 0.14 0.73 6.17 -52.49 -0.32 0.41 16 42 H 0.14 1.13 7.53 -52.49 -0.40 0.73 16 43 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 44 H 0.12 0.43 8.06 -52.48 -0.42 0.01 16 45 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 46 H 0.13 0.56 6.17 -52.48 -0.32 0.24 16 47 H 0.16 1.15 6.41 -52.49 -0.34 0.82 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -33.89 393.21 -10.35 -44.24 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.39 Total: 8.13 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -4.94 Total: -8.01 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.00 Total: -59.17 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.89 -10.35 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666641581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.461 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds