Wall clock time and date at job start Tue Mar 31 2020 23:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46469 * 2 1 4 4 C 1.52993 * 109.47130 * 119.99699 * 2 1 3 5 5 N 1.46497 * 109.47498 * 295.00219 * 4 2 1 6 6 C 1.36937 * 120.00345 * 180.02562 * 5 4 2 7 7 H 1.07993 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.38819 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99917 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00009 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47361 * 59.99626 * 10 8 6 12 12 H 1.48500 * 109.47342 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47063 * 299.99865 * 10 8 6 14 14 C 1.53002 * 109.46881 * 239.99964 * 2 1 3 15 15 N 1.46504 * 109.47287 * 64.99613 * 14 2 1 16 16 C 1.34767 * 119.99917 * 179.97438 * 15 14 2 17 17 O 1.21570 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.47705 * 119.99948 * 180.02562 * 16 15 14 19 19 C 1.40195 * 120.46166 * 180.02562 * 18 16 15 20 20 C 1.38041 * 118.38791 * 180.02562 * 19 18 16 21 21 C 1.39509 * 119.21273 * 359.97438 * 20 19 18 22 22 C 1.48226 * 119.57207 * 179.97438 * 21 20 19 23 23 C 1.39424 * 120.13057 * 180.02562 * 22 21 20 24 24 C 1.37995 * 119.86731 * 179.97438 * 23 22 21 25 25 C 1.38338 * 120.12963 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.26308 * 359.97438 * 25 24 23 27 27 C 1.37988 * 120.13062 * 0.02562 * 26 25 24 28 28 N 1.32771 * 120.85905 * 0.26516 * 21 20 19 29 29 C 1.31522 * 121.76828 * 359.46514 * 28 21 20 30 30 H 1.08996 * 109.47448 * 60.00116 * 1 2 3 31 31 H 1.09004 * 109.47136 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47079 * 300.00209 * 1 2 3 33 33 H 1.09003 * 109.47109 * 54.99820 * 4 2 1 34 34 H 1.09000 * 109.46973 * 175.00170 * 4 2 1 35 35 H 0.97005 * 119.99955 * 0.02562 * 5 4 2 36 36 H 0.96993 * 119.99638 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.46793 * 304.99877 * 14 2 1 38 38 H 1.08999 * 109.46495 * 184.99756 * 14 2 1 39 39 H 0.97001 * 119.99756 * 0.02562 * 15 14 2 40 40 H 1.08002 * 120.80632 * 359.97438 * 19 18 16 41 41 H 1.07995 * 120.39635 * 180.02562 * 20 19 18 42 42 H 1.07996 * 120.06773 * 0.02562 * 23 22 21 43 43 H 1.08008 * 119.93430 * 179.72605 * 24 23 22 44 44 H 1.08010 * 119.86629 * 180.02562 * 25 24 23 45 45 H 1.08001 * 119.93254 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.06632 * 180.02562 * 27 26 25 47 47 H 1.07994 * 119.65259 * 180.29614 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 0.0354 2.4423 6 6 2.0020 -0.4202 3.6855 7 1 2.5630 -1.3374 3.7864 8 6 1.6352 0.2971 4.8161 9 7 0.9519 1.4153 4.6930 10 14 2.1113 -0.3247 6.5119 11 1 3.5904 -0.4153 6.6087 12 1 1.6048 0.6151 7.5440 13 1 1.5178 -1.6682 6.7311 14 6 2.0400 -0.7213 -1.2493 15 7 1.6523 0.0353 -2.4425 16 6 1.9963 -0.4132 -3.6659 17 8 2.6278 -1.4458 -3.7795 18 6 1.6059 0.3499 -4.8688 19 6 1.9581 -0.1080 -6.1462 20 6 1.5717 0.6390 -7.2408 21 6 0.8487 1.8154 -7.0414 22 6 0.4302 2.6240 -8.2111 23 6 -0.2923 3.8018 -8.0252 24 6 -0.6787 4.5507 -9.1180 25 6 -0.3510 4.1345 -10.3960 26 6 0.3656 2.9668 -10.5866 27 6 0.7575 2.2096 -9.5016 28 7 0.5355 2.2230 -5.8173 29 6 0.8807 1.5371 -4.7495 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7197 1.2952 34 1 3.1263 -0.7993 1.2056 35 1 1.1482 0.8591 2.3518 36 1 0.6953 1.9162 5.4830 37 1 1.6053 -1.7198 -1.2951 38 1 3.1263 -0.7994 -1.2056 39 1 1.1487 0.8594 -2.3518 40 1 2.5189 -1.0226 -6.2709 41 1 1.8253 0.3163 -8.2398 42 1 -0.5483 4.1279 -7.0280 43 1 -1.2422 5.4610 -8.9755 44 1 -0.6553 4.7242 -11.2482 45 1 0.6189 2.6471 -11.5866 46 1 1.3173 1.2983 -9.6516 47 1 0.6039 1.8980 -3.7701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666641581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:22 Heat of formation + Delta-G solvation = 8.689140 kcal Electronic energy + Delta-G solvation = -26864.887811 eV Core-core repulsion = 23011.496829 eV Total energy + Delta-G solvation = -3853.390982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.82354 -40.55890 -39.44072 -38.22968 -36.03851 -34.45023 -33.86747 -33.56199 -31.95775 -31.78470 -30.51941 -27.82510 -27.20640 -25.68473 -25.02122 -24.20113 -23.03974 -22.54093 -21.72250 -21.27527 -19.48750 -18.90473 -18.24663 -17.86879 -17.05077 -16.94594 -16.63186 -16.42005 -15.89397 -15.71112 -15.52163 -15.45791 -15.28481 -15.09246 -14.98249 -14.52699 -14.31957 -14.17038 -14.03849 -13.68514 -13.57361 -13.50906 -13.38403 -12.95696 -12.77024 -12.21818 -12.21211 -12.17375 -12.00345 -11.99600 -11.74552 -11.65786 -11.31528 -11.11997 -10.92658 -10.80914 -10.56783 -10.19586 -9.86194 -9.28502 -8.98457 -7.94734 -5.22860 -0.83093 0.13789 0.49887 0.54910 1.48168 1.50793 1.56909 1.77366 2.00269 2.57285 2.64040 2.93935 3.06646 3.38943 3.48770 3.60571 3.70075 3.75030 3.87625 3.96214 4.02118 4.07593 4.13807 4.17651 4.31204 4.35446 4.50569 4.54397 4.59858 4.64899 4.70539 4.74249 4.85294 4.93904 4.98230 5.02622 5.04535 5.13298 5.17383 5.26561 5.37002 5.39050 5.47530 5.50625 5.56404 5.58131 5.62495 6.04743 6.27690 6.39810 6.72758 7.05935 7.34806 8.10325 8.34403 9.28392 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024240 B = 0.001602 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.848929 B =17475.064557 C =18471.102999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.080 0.920 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.249 4.249 7 H 0.074 0.926 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.138 3.862 15 N -0.707 5.707 16 C 0.564 3.436 17 O -0.575 6.575 18 C -0.202 4.202 19 C -0.017 4.017 20 C -0.165 4.165 21 C 0.182 3.818 22 C -0.080 4.080 23 C -0.093 4.093 24 C -0.136 4.136 25 C -0.107 4.107 26 C -0.128 4.128 27 C -0.100 4.100 28 N -0.500 5.500 29 C 0.145 3.855 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.376 0.624 36 H 0.251 0.749 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.412 0.588 40 H 0.155 0.845 41 H 0.174 0.826 42 H 0.126 0.874 43 H 0.141 0.859 44 H 0.148 0.852 45 H 0.152 0.848 46 H 0.148 0.852 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 3.985 -35.662 35.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.098 0.902 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.381 4.381 7 H 0.092 0.908 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.205 1.205 14 C 0.014 3.986 15 N -0.359 5.359 16 C 0.351 3.649 17 O -0.455 6.455 18 C -0.207 4.207 19 C -0.043 4.043 20 C -0.185 4.185 21 C 0.047 3.953 22 C -0.081 4.081 23 C -0.112 4.112 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.146 4.146 27 C -0.118 4.118 28 N -0.208 5.208 29 C -0.015 4.015 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.209 0.791 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.250 0.750 40 H 0.173 0.827 41 H 0.192 0.808 42 H 0.144 0.856 43 H 0.159 0.841 44 H 0.166 0.834 45 H 0.170 0.830 46 H 0.166 0.834 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.546 3.901 -35.470 35.775 hybrid contribution 0.276 -0.352 1.544 1.608 sum -2.271 3.549 -33.926 34.186 Atomic orbital electron populations 1.21747 0.93893 1.02030 1.01787 1.21347 0.97157 1.00174 0.92754 0.90173 1.20723 0.96595 0.94154 0.85581 1.42490 1.66787 1.27851 1.01304 1.19605 1.28015 1.05375 0.85116 0.90845 1.25529 1.01657 0.97863 1.01464 1.69794 1.45002 1.17794 1.29168 0.85230 0.77876 0.77167 0.79588 1.20508 1.22051 1.20484 1.21210 0.99889 0.95093 0.82419 1.45823 1.57010 1.28035 1.05042 1.18224 0.78799 0.84321 0.83537 1.90770 1.41870 1.25762 1.87136 1.20960 1.06047 0.99174 0.94556 1.21845 0.93257 0.98753 0.90412 1.22318 0.99756 0.95002 1.01387 1.20340 0.91922 0.91971 0.91093 1.18670 1.01978 0.96048 0.91389 1.21464 0.95983 0.93682 1.00095 1.21443 1.00677 1.00667 0.92551 1.21702 0.96572 0.96527 0.97685 1.21453 0.98362 0.95046 0.99737 1.21558 0.98893 1.00580 0.90812 1.67666 1.21365 1.33087 0.98697 1.23216 0.90852 0.89116 0.98319 0.90628 0.92868 0.93794 0.96002 0.96149 0.79080 0.93988 0.91293 0.91620 0.74960 0.82729 0.80831 0.85596 0.84124 0.83428 0.82991 0.83395 0.80219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 8.94 71.98 0.64 -3.17 16 2 C -0.10 -2.78 2.46 -10.79 -0.03 -2.80 16 3 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 4 C 0.16 6.10 5.65 86.38 0.49 6.59 16 5 N -0.74 -37.10 5.33 -343.46 -1.83 -38.93 16 6 C -0.25 -13.96 9.99 84.04 0.84 -13.12 16 7 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 8 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 9 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 10 Si 0.97 46.17 29.55 68.60 2.03 48.19 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.14 3.55 5.06 86.38 0.44 3.99 16 15 N -0.71 -15.28 5.24 -466.11 -2.44 -17.72 16 16 C 0.56 13.88 7.77 86.75 0.67 14.55 16 17 O -0.57 -18.29 16.41 -3.94 -0.06 -18.35 16 18 C -0.20 -4.09 5.89 -19.96 -0.12 -4.20 16 19 C -0.02 -0.30 9.70 22.70 0.22 -0.08 16 20 C -0.17 -2.39 9.44 22.53 0.21 -2.18 16 21 C 0.18 3.26 6.73 41.97 0.28 3.54 16 22 C -0.08 -1.27 5.88 -20.05 -0.12 -1.38 16 23 C -0.09 -1.49 9.57 22.50 0.22 -1.27 16 24 C -0.14 -1.59 10.03 22.24 0.22 -1.37 16 25 C -0.11 -0.95 10.04 22.32 0.22 -0.73 16 26 C -0.13 -1.08 10.03 22.23 0.22 -0.86 16 27 C -0.10 -1.08 9.42 22.50 0.21 -0.87 16 28 N -0.50 -10.05 9.40 -183.83 -1.73 -11.78 16 29 C 0.14 2.63 10.70 85.08 0.91 3.54 16 30 H 0.07 1.58 7.18 -2.39 -0.02 1.56 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.48 7.18 -2.38 -0.02 1.46 16 33 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.38 19.75 6.85 -92.70 -0.63 19.12 16 36 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.41 6.77 5.71 -92.71 -0.53 6.24 16 40 H 0.16 2.55 7.73 -2.91 -0.02 2.52 16 41 H 0.17 1.31 6.17 -2.91 -0.02 1.29 16 42 H 0.13 2.16 7.53 -2.91 -0.02 2.14 16 43 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.15 0.56 8.06 -2.91 -0.02 0.53 16 45 H 0.15 0.46 8.06 -2.91 -0.02 0.44 16 46 H 0.15 0.85 6.17 -2.91 -0.02 0.84 16 47 H 0.18 2.34 6.41 -2.91 -0.02 2.32 16 Total: -1.00 -73.50 393.21 2.10 -71.40 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.16 Total: 29.12 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 6.01 Total: -3.52 kcal Atomic # 7 Polarization: -121.12 SS G_CDS: -5.72 Total: -126.84 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.06 Total: -18.35 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -73.50 2.10 -71.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666641581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.090 kcal (2) G-P(sol) polarization free energy of solvation -73.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds