Wall clock time and date at job start Tue Mar 31 2020 22:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 5 5 C 1.36936 * 119.99629 * 85.00344 * 4 2 1 6 6 H 1.07999 * 120.00471 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99914 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00216 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99938 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47153 * 89.99604 * 9 7 5 11 11 H 1.48492 * 109.47181 * 209.99892 * 9 7 5 12 12 H 1.48505 * 109.47087 * 330.00065 * 9 7 5 13 13 C 1.53005 * 109.46982 * 120.00322 * 2 1 3 14 14 H 1.08992 * 109.49822 * 59.93243 * 13 2 1 15 15 C 1.53043 * 109.49438 * 299.83686 * 13 2 1 16 16 C 1.53038 * 109.53502 * 178.68589 * 15 13 2 17 17 C 1.53187 * 109.31576 * 61.36341 * 16 15 13 18 18 N 1.46921 * 108.77788 * 305.36875 * 17 16 15 19 19 C 1.34776 * 120.62929 * 233.63293 * 18 17 16 20 20 O 1.21282 * 120.00221 * 179.97438 * 19 18 17 21 21 C 1.50703 * 120.00223 * 359.97063 * 19 18 17 22 22 N 1.46498 * 109.47304 * 180.02562 * 21 19 18 23 23 C 1.36364 * 125.96342 * 269.68858 * 22 21 19 24 24 O 1.35631 * 125.98573 * 0.03681 * 23 22 21 25 25 N 1.30908 * 108.02316 * 179.88721 * 23 22 21 26 26 N 1.40112 * 107.93951 * 0.37586 * 25 23 22 27 27 C 1.30907 * 107.93732 * 359.76031 * 26 25 23 28 28 O 1.35625 * 125.98361 * 180.02562 * 27 26 25 29 29 C 1.46923 * 118.74183 * 53.60147 * 18 17 16 30 30 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 32 32 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 33 33 H 0.97000 * 119.99818 * 265.00273 * 4 2 1 34 34 H 0.97001 * 119.99727 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.45827 * 298.70417 * 15 13 2 36 36 H 1.08995 * 109.46109 * 58.66279 * 15 13 2 37 37 H 1.08998 * 109.49660 * 301.40826 * 16 15 13 38 38 H 1.09001 * 109.52420 * 181.33286 * 16 15 13 39 39 H 1.08994 * 109.59124 * 185.57417 * 17 16 15 40 40 H 1.09004 * 109.70573 * 65.22259 * 17 16 15 41 41 H 1.09005 * 109.46778 * 300.00471 * 21 19 18 42 42 H 1.08999 * 109.46914 * 60.00116 * 21 19 18 43 43 H 0.96700 * 113.99726 * 90.00270 * 24 23 22 44 44 H 0.96709 * 114.00181 * 269.97298 * 28 27 26 45 45 H 1.08998 * 109.59023 * 186.60758 * 29 18 17 46 46 H 1.09000 * 109.70466 * 66.25310 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4244 7 6 2.6124 -0.6617 -3.5090 8 7 2.7376 -0.0052 -4.6430 9 14 3.0565 -2.4742 -3.4252 10 1 1.8594 -3.2926 -3.7451 11 1 4.1323 -2.7661 -4.4063 12 1 3.5309 -2.8049 -2.0574 13 6 2.0400 -0.7213 1.2493 14 1 1.6759 -1.7487 1.2502 15 6 1.5335 0.0020 2.4992 16 6 2.0158 -0.7376 3.7492 17 6 3.5474 -0.7382 3.7782 18 7 4.0441 -1.3005 2.5150 19 6 4.9160 -2.3284 2.5168 20 8 5.3183 -2.7841 1.4673 21 6 5.3910 -2.9113 3.8227 22 7 6.3257 -4.0076 3.5569 23 6 5.9960 -5.3220 3.4047 24 8 4.7455 -5.8429 3.4722 25 7 7.0974 -5.9924 3.1789 26 7 8.1654 -5.0856 3.1946 27 6 7.6781 -3.8926 3.4244 28 8 8.3929 -2.7436 3.5144 29 6 3.5719 -0.7217 1.2499 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.0610 -0.4626 -5.4349 35 1 1.9182 1.0219 2.5095 36 1 0.4438 0.0253 2.4888 37 1 1.6520 -1.7648 3.7273 38 1 1.6353 -0.2358 4.6389 39 1 3.8970 -1.3472 4.6118 40 1 3.9133 0.2822 3.8927 41 1 5.8938 -2.1384 4.4041 42 1 4.5366 -3.2899 4.3838 43 1 4.2837 -5.8685 2.6230 44 1 8.6962 -2.5381 4.4094 45 1 3.9375 -1.3199 0.4153 46 1 3.9376 0.3007 1.1544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667351943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:37 Heat of formation + Delta-G solvation = 0.146132 kcal Electronic energy + Delta-G solvation = -30823.714356 eV Core-core repulsion = 26559.103658 eV Total energy + Delta-G solvation = -4264.610698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.59400 -40.44347 -38.47544 -38.17404 -37.37724 -35.80597 -34.64080 -33.18858 -31.98768 -30.55434 -29.83914 -29.20887 -27.99216 -25.56843 -23.93786 -23.08360 -23.06440 -22.34810 -21.33742 -20.00162 -19.66657 -19.20203 -18.73932 -17.97267 -17.51224 -17.06242 -16.58497 -15.84964 -15.70693 -15.55257 -15.01870 -14.76217 -14.47822 -14.20452 -13.92452 -13.63351 -13.40148 -13.19782 -13.15206 -13.09632 -12.72015 -12.69143 -12.50384 -12.35820 -11.72358 -11.68170 -11.34056 -11.29556 -11.07915 -10.92339 -10.87846 -10.82755 -10.77039 -10.45411 -10.21794 -10.01616 -9.79645 -9.68355 -9.58248 -8.99233 -8.81418 -7.29787 -5.78295 -3.14308 1.14006 1.44504 1.96517 2.18744 2.63820 2.95308 3.39484 3.43257 3.45315 3.49330 3.90941 3.98492 4.33651 4.41332 4.59701 4.60863 4.69261 4.89808 4.90773 4.95453 5.05022 5.11055 5.35659 5.40271 5.41580 5.52461 5.53109 5.65152 5.73118 5.77138 5.87004 5.91308 6.01845 6.15640 6.20568 6.25219 6.39495 6.43515 6.71057 6.73008 6.92505 6.97099 7.09843 7.61828 7.79642 7.96551 8.40664 9.18607 9.91656 10.10140 11.39876 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.003782 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.584385 B = 7402.399377 C = 8900.886522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.185 3.815 3 H 0.056 0.944 4 N -0.749 5.749 5 C -0.245 4.245 6 H 0.090 0.910 7 C 0.009 3.991 8 N -0.933 5.933 9 Si 0.879 3.121 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.275 1.275 13 C -0.106 4.106 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.103 3.897 18 N -0.604 5.604 19 C 0.494 3.506 20 O -0.517 6.517 21 C 0.084 3.916 22 N -0.498 5.498 23 C 0.417 3.583 24 O -0.439 6.439 25 N -0.293 5.293 26 N -0.295 5.295 27 C 0.417 3.583 28 O -0.431 6.431 29 C 0.120 3.880 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.360 0.640 34 H 0.260 0.740 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.417 0.583 44 H 0.409 0.591 45 H 0.101 0.899 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 -1.970 27.186 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.075 3.925 3 H 0.074 0.926 4 N -0.392 5.392 5 C -0.375 4.375 6 H 0.108 0.892 7 C -0.187 4.187 8 N -0.580 5.580 9 Si 0.709 3.291 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C -0.126 4.126 14 H 0.087 0.913 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.020 4.020 18 N -0.338 5.338 19 C 0.278 3.722 20 O -0.392 6.392 21 C -0.044 4.044 22 N -0.218 5.218 23 C 0.107 3.893 24 O -0.240 6.240 25 N -0.136 5.136 26 N -0.138 5.138 27 C 0.107 3.893 28 O -0.230 6.230 29 C -0.001 4.001 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.193 0.807 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.276 0.724 44 H 0.267 0.733 45 H 0.120 0.880 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.476 -3.231 26.112 26.427 hybrid contribution -0.893 0.086 0.147 0.909 sum 1.583 -3.146 26.259 26.494 Atomic orbital electron populations 1.22452 0.98673 1.00857 1.00533 1.20150 0.92108 0.95567 0.84657 0.92568 1.42820 1.79706 1.09480 1.07169 1.19023 1.37310 0.95565 0.85569 0.89195 1.24634 1.01186 0.97337 0.95562 1.69693 1.52477 1.35599 1.00265 0.86635 0.78073 0.86930 0.77439 1.21195 1.21704 1.20069 1.21817 0.94396 1.00539 0.95870 0.91280 1.21628 1.01435 0.99204 0.93080 1.21921 0.94318 1.01768 0.99205 1.21839 0.95417 0.99646 0.85117 1.48182 1.43879 1.33216 1.08488 1.20544 0.80021 0.80774 0.90842 1.90853 1.55810 1.59864 1.32690 1.21783 0.95079 0.90199 0.97298 1.46623 1.07996 1.08146 1.59054 1.21277 0.88670 0.79601 0.99794 1.84862 1.21503 1.79977 1.37657 1.78372 0.94415 1.20040 1.20819 1.78361 1.17903 0.95801 1.21774 1.21244 0.79227 0.88773 1.00047 1.85050 1.68298 1.34561 1.35132 1.21782 0.94060 0.99415 0.84826 0.93710 0.93920 0.92287 0.80666 0.93036 0.91473 0.90806 0.91487 0.90524 0.90474 0.90593 0.85771 0.85352 0.72404 0.73326 0.88027 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.14 37.16 0.34 -2.27 16 2 C 0.19 3.19 2.47 -67.92 -0.17 3.02 16 3 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.75 -16.94 4.32 -53.42 -0.23 -17.17 16 5 C -0.24 -6.75 10.41 -15.06 -0.16 -6.90 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 8 N -0.93 -29.40 13.97 55.49 0.78 -28.63 16 9 Si 0.88 22.82 27.74 -169.99 -4.71 18.10 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 12 H -0.27 -6.92 6.52 56.52 0.37 -6.55 16 13 C -0.11 -1.41 1.97 -90.50 -0.18 -1.59 16 14 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.12 -1.07 4.86 -26.69 -0.13 -1.20 16 16 C -0.13 -0.86 6.08 -26.62 -0.16 -1.02 16 17 C 0.10 0.63 6.34 -3.72 -0.02 0.61 16 18 N -0.60 -6.47 2.97 -172.78 -0.51 -6.99 16 19 C 0.49 5.97 7.77 -10.98 -0.09 5.89 16 20 O -0.52 -9.28 15.84 5.56 0.09 -9.19 16 21 C 0.08 0.62 4.84 -5.19 -0.03 0.60 16 22 N -0.50 -5.36 2.25 -121.35 -0.27 -5.63 16 23 C 0.42 5.08 9.15 -88.82 -0.81 4.27 16 24 O -0.44 -4.06 13.58 -18.59 -0.25 -4.31 16 25 N -0.29 -4.42 12.72 29.65 0.38 -4.04 16 26 N -0.29 -4.42 12.72 29.65 0.38 -4.05 16 27 C 0.42 5.03 9.15 -88.81 -0.81 4.21 16 28 O -0.43 -3.85 13.58 -18.57 -0.25 -4.10 16 29 C 0.12 1.74 5.47 -3.71 -0.02 1.72 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.53 6.40 -51.93 -0.33 0.20 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.36 8.31 5.47 -40.82 -0.22 8.08 16 34 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 35 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.07 0.67 6.36 -51.93 -0.33 0.34 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.24 5.93 -51.93 -0.31 -0.07 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.12 0.49 7.94 -51.93 -0.41 0.08 16 42 H 0.13 0.60 7.69 -51.93 -0.40 0.20 16 43 H 0.42 2.52 9.06 45.56 0.41 2.93 16 44 H 0.41 0.90 9.06 45.56 0.41 1.31 16 45 H 0.10 1.94 6.51 -51.93 -0.34 1.60 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -40.24 377.61 -6.17 -46.42 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.91 Total: 6.41 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -2.33 Total: 7.49 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: 0.51 Total: -66.50 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.42 Total: -17.61 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.10 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -40.24 -6.17 -46.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667351943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.562 kcal (2) G-P(sol) polarization free energy of solvation -40.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds